Pregenerated sensors for PRSS55 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034623Ensembl transcript IDs: ENSMUST00000089338.6, ENSMUST00000171503.8
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTCAGGGCTaGGGATTTGGAGAGCTGATTGTTCTGTCTGTTTTTCTTCTTGTT | + |
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Preference number: 1 (lower is better) Translates to: GQQTGQEPALGAVQG*GFGELIVLSVFLLV Trigger: AACAAGAAGAAAAACAGACAGAACAATCAGCTCTCCAAATCCCCAGCCCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR GCA 90 bp | AGAGACTGCATTGTTTTATTTCCAGTTGGACAAGGCTCTAAGCAGTaGAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTT | + |
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Preference number: 1 (lower is better) Translates to: RDCIVLFPVGQGSKQ*KGQQTGQEPALGAV Trigger: AACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCCAACTGGAAATAAAACAATGCAGTCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR CAA 90 bp | GGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTaGGGGGCAGTTCAGGGCTGGGGATTTGGAGAGCTGATTGTTCTG | + |
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Preference number: 2 (lower is better) Translates to: GSKQCKGQQTGQEPA*GAVQGWGFGELIVL Trigger: CAGAACAATCAGCTCTCCAAATCCCCAGCCCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR-3UTR CCA 90 bp | GGACAAGGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTCAGGGCTaGGGATTTGGAGAGCTGATT | + |
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Preference number: 2 (lower is better) Translates to: GQGSKQCKGQQTGQEPALGAVQG*GFGELI Trigger: AATCAGCTCTCCAAATCCCCAGCCCTGAACTGCCCC...CAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR-3UTR TCA 90 bp | AGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTCAGGGGGGATTTGGAGAGCTaGTTGTTCTGTCTGTTTTTC | + |
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Preference number: 2 (lower is better) Translates to: SSAKDSRQGRSQLWGQFRGDLES*LFCLFF Trigger: GAAAAACAGACAGAACAATCAGCTCTCCAAATCCCC...CCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCT 54% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR-3UTR CCA 90 bp | GTTGGACAAGGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTCAGGGCTGGGGATTTaGAGAGCTGATTGTTCTGTC | + |
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Preference number: 2 (lower is better) Translates to: VGQGSKQCKGQQTGQEPASGLGI*RADCSV Trigger: GACAGAACAATCAGCTCTCCAAATCCCCAGCCCTGA...AGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR-3UTR CCA 90 bp | TTGGACAAGGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTGGCTTCCCCTCTGTCTaGGCTATTTTCTCAATCCAC | + |
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Preference number: 2 (lower is better) Translates to: LDKALSSAKDSRQGRSQLGFPSV*AIFSIH Trigger: GTGGATTGAGAAAATAGCCCAGACAGAGGGGAAGCC...AAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR-3UTR GCA 90 bp | AGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTCAGGCCACAGGGTATACTTTaGCAATACAGTATATATCCC | + |
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Preference number: 2 (lower is better) Translates to: SSAKDSRQGRSQLWGQFRPQGIL*QYSIYP Trigger: GGGATATATACTGTATTGGCAAAGTATACCCTGTGG...CCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR-3UTR CAA 90 bp | GTTGGACAAGGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTCCACAGGGTATACTTaGCCAATACAGTATATATCC | + |
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Preference number: 3 (lower is better) Translates to: VGQGSKQCKGQQTGQEPASTGYT*PIQYIS Trigger: GGATATATACTGTATTGGCAAAGTATACCCTGTGGA...AGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCCAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR GCA 90 bp | GCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTCAGGGGCCACCCAGCATTCGTaGCAGCTGGGAGGGGCGGGC | + |
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Preference number: 4 (lower is better) Translates to: AVQRTADRAGASFGGSSGATQHS*QLGGAG Trigger: GCCCGCCCCTCCCAGCTGGCACGAATGCTGGGTGGC...CCCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR CAA 72 bp | CAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTaGGGGGCAGTTCAGGGCTGGGGATTTGGAGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: QCKGQQTGQEPA*GAVQGWGFGEL Trigger: CAGCTCTCCAAATCCCCAGCCCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR TCA 90 bp | TTGGACAAGGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTGGATCCACCACTCACTaGGAATGGAGCCGCCGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LDKALSSAKDSRQGRSQLGSTTH*EWSRRR Trigger: TCTGCGGCGGCTCCATTCTCAGTGAGTGGTGGATCC...AAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR GCA 90 bp | GGACAAGGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGCCCAGCTCAGCCTCCTaGCCTTCTATGATCCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: GQGSKQCKGQQTGQEPALPSSAS*PSMILE Trigger: CTCCAGGATCATAGAAGGGCAGGAGGCTGAGCTGGG...CAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR CCA 90 bp | AGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTCAGGAATGCTCACCTGCCATaGAAACTCACCCAGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSAKDSRQGRSQLWGQFRNAHLP*KLTQLS Trigger: GCTGAGCTGGGTGAGTTTCCATGGCAGGTGAGCATT...CCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR CCA 90 bp | GGACAAGGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGTACTGCCAGGATCTGTaGTGCAGACAAGCGGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: GQGSKQCKGQQTGQEPALYCQDL*CRQAVP Trigger: GGGGACCGCTTGTCTGCACCACAGATCCTGGCAGTA...CAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR TCA 90 bp | GTTGGACAAGGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTACAGCATGTTTGTGGTaGGGCTGGGAAACATCTGTA | + |
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Preference number: 4 (lower is better) Translates to: VGQGSKQCKGQQTGQEPATACLW*GWETSV Trigger: TACAGATGTTTCCCAGCCTCACCACAAACATGCTGT...AGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR GCA 90 bp | GCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTCAGGGTGGAGTATTGAATTCTaGTATCATACAGGGGTCTCA | + |
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Preference number: 4 (lower is better) Translates to: AVQRTADRAGASFGGSSGWSIEF*YHTGVS Trigger: TGAGACCCCTGTATGATAGCAGAATTCAATACTCCA...CCCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR GCA 90 bp | TCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTGGTCACTTTCCTGAATaGTCACCTGCCATGGAAACT | + |
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Preference number: 4 (lower is better) Translates to: SKQCKGQQTGQEPALGAVGHFPE*SPAMET Trigger: AGTTTCCATGGCAGGTGAGCATTCAGGAAAGTGACC...AACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR CCA 90 bp | GCTTTGGGGGCAGTTCAGGGCTGGGGATTTGGAGAGCTGATTGTTCTGTCTGTTCCTTGTCAGTTGAGTTaGTTACGCCCCATCCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: ALGAVQGWGFGELIVLSVPCQLS*LRPILP Trigger: TGGCAGGATGGGGCGTAACCAACTCAACTGACAAGG...AACAGACAGAACAATCAGCTCTCCAAATCCCCAGCCCTGAACTGCCCCCAAAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR TCA 90 bp | AGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTCAGGATGATCCTGGAGTATTaGATTCTGCTATCATACAGG | + |
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Preference number: 4 (lower is better) Translates to: SSAKDSRQGRSQLWGQFRMILEY*ILLSYR Trigger: CCTGTATGATAGCAGAATTCAATACTCCAGGATCAT...CCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR TCA 90 bp | TCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTGCTCTCATTACCATATaGGGCACACAGCATGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: SKQCKGQQTGQEPALGAVALITI*GTQHVC Trigger: ACAAACATGCTGTGTGCCTCATATGGTAATGAGAGC...AACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR TCA 90 bp | GCTTTGGGGGCAGTTCAGGGCTGGGGATTTGGAGAGCTGATTGTTCTGTCTGTTCCTCCTGCCCTTCTATaGTCCTGGAGTATTGAATTC | + |
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Preference number: 4 (lower is better) Translates to: ALGAVQGWGFGELIVLSVPPALL*SWSIEF Trigger: GAATTCAATACTCCAGGATCATAGAAGGGCAGGAGG...AACAGACAGAACAATCAGCTCTCCAAATCCCCAGCCCTGAACTGCCCCCAAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR TCA 90 bp | GCTTTGGGGGCAGTTCAGGGCTGGGGATTTGGAGAGCTGATTGTTCTGTCTGTTCTTCATCAGATCCGTTaGCATAGATTCCTTGTCAGT | + |
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Preference number: 4 (lower is better) Translates to: ALGAVQGWGFGELIVLSVLHQIR*HRFLVS Trigger: ACTGACAAGGAATCTATGTCAACGGATCTGATGAAG...AACAGACAGAACAATCAGCTCTCCAAATCCCCAGCCCTGAACTGCCCCCAAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| 3UTR CAA 72 bp | CTGTCTGGGCTATTTTCTCAATCCACAGGGTATACTTaGCCAATACAGTATATATCCCTGGGAAGCCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: LSGLFSQSTGYT*PIQYISLGSLF Trigger: AAAAAGGCTTCCCAGGGATATATACTGTATTGGCAAAGTATACCCTGTGGATTGAGAAAATAGCCCAGACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS CCA 90 bp | TTGAGTTGGTTACGCCCCATCCTGCCACCCAGCATTCGTGCCAGCTaGGAGGGGCGGGCCAGAGAGGAAGGCAGATGGGCACCGTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: LSWLRPILPPSIRAS*EGRAREEGRWAPSA Trigger: AGCTGACGGTGCCCATCTGCCTTCCTCTCTGGCCCGCCCCTCCCAGCTGGCACGAATGCTGGGTGGCAGGATGGGGCGTAACCAACTCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS TCA 90 bp | GAGGGGCGGGCCAGAGAGGAAGGCAGATGGGCACCGTCAGCTCATTaGACGTCAAGGGCTTGGCTAGCAGCAACAAGGCAATGTCGTTGT | + |
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Preference number: 5 (lower is better) Translates to: EGRAREEGRWAPSAH*TSRAWLAATRQCRC Trigger: ACAACGACATTGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGAGCTGACGGTGCCCATCTGCCTTCCTCTCTGGCCCGCCCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS-3UTR CAA 90 bp | AGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTTGGGGGCAGTTCAGGAACAAGGCAATGTCGTaGTCCATGTTCAGCCGTTTA | + |
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Preference number: 5 (lower is better) Translates to: SSAKDSRQGRSQLWGQFRNKAMS*SMFSRL Trigger: TAAACGGCTGAACATGGACAACGACATTGCCTTGTT...CCTGAACTGCCCCCAAAGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS TCA 90 bp | TCACCTGCCATGGAAACTCACCCAGCTCAGCCTCCTGCCCTTCTATaGTCCTGGAGTATTGAATTCTGCTATCATACAGGGGTCTCACAC | + |
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Preference number: 5 (lower is better) Translates to: SPAMETHPAQPPALL*SWSIEFCYHTGVSH Trigger: GTGTGAGACCCCTGTATGATAGCAGAATTCAATACTCCAGGATCATAGAAGGGCAGGAGGCTGAGCTGGGTGAGTTTCCATGGCAGGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS-3UTR CAA 90 bp | GTTGGACAAGGCTCTAAGCAGTGCAAAGGACAGCAGACAGGGCAGGAGCCAGCTTATGATCCTGGAGTATaGAATTCTGCTATCATACAG | + |
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Preference number: 5 (lower is better) Translates to: VGQGSKQCKGQQTGQEPAYDPGV*NSAIIQ Trigger: CTGTATGATAGCAGAATTCAATACTCCAGGATCATA...AGCTGGCTCCTGCCCTGTCTGCTGTCCTTTGCACTGCTTAGAGCCTTGTCCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS-3UTR CAA 90 bp | GCTTTGGGGGCAGTTCAGGGCTGGGGATTTGGAGAGCTGATTGTTCTGTCTGTTGTTGACATAGATTCCTaGTCAGTTGAGTTGGTTACG | + |
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Preference number: 5 (lower is better) Translates to: ALGAVQGWGFGELIVLSVVDIDS*SVELVT Trigger: CGTAACCAACTCAACTGACAAGGAATCTATGTCAAC...AACAGACAGAACAATCAGCTCTCCAAATCCCCAGCCCTGAACTGCCCCCAAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS TCA 90 bp | AACTCACCCAGCTCAGCCTCCTGCCCTTCTATGATCCTGGAGTATTaGATTCTGCTATCATACAGGGGTCTCACACCACACTCAACATTT | + |
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Preference number: 5 (lower is better) Translates to: NSPSSASCPSMILEY*ILLSYRGLTPHSTF Trigger: AAATGTTGAGTGTGGTGTGAGACCCCTGTATGATAGCAGAATTCAATACTCCAGGATCATAGAAGGGCAGGAGGCTGAGCTGGGTGAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS GCA 90 bp | AACAAGGCAATGTCGTTGTCCATGTTCAGCCGTTTAAAGCCTTTGTaGCGGATTATGGTGGTGACCTCTAGTTCCACGGGTGAAGTAGTT | + |
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Preference number: 5 (lower is better) Translates to: NKAMSLSMFSRLKPL*RIMVVTSSSTGEVV Trigger: AACTACTTCACCCGTGGAACTAGAGGTCACCACCATAATCCGGCACAAAGGCTTTAAACGGCTGAACATGGACAACGACATTGCCTTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 90 bp | GGAGGGGCGGGCCAGAGAGGAAGGCAGATGGGCACCGTCAGCTCATaGAACGTCAAGGGCTTGGCTAGCAGCAACAAGGCAATGTCGTTG | + |
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Preference number: 6 (lower is better) Translates to: GGAGQRGRQMGTVSS*NVKGLASSNKAMSL Trigger: CAACGACATTGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGAGCTGACGGTGCCCATCTGCCTTCCTCTCTGGCCCGCCCCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 72 bp | GGCCAGAGAGGAAGGCAGATGGGCACCGTCAGCTCATaGAACGTCAAGGGCTTGGCTAGCAGCAACAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: GQRGRQMGTVSS*NVKGLASSNKA Trigger: TGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGAGCTGACGGTGCCCATCTGCCTTCCTCTCTGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS TCA 72 bp | GCCAGAGAGGAAGGCAGATGGGCACCGTCAGCTCATTaGACGTCAAGGGCTTGGCTAGCAGCAACAAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: AREEGRWAPSAH*TSRAWLAATRQ Trigger: TTGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGAGCTGACGGTGCCCATCTGCCTTCCTCTCTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS GCA 72 bp | TGGAGCCGCCGCAGAAATGGTGGTCACTTTCCTGAATaGTCACCTGCCATGGAAACTCACCCAGCTCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: WSRRRNGGHFPE*SPAMETHPAQP Trigger: AGGCTGAGCTGGGTGAGTTTCCATGGCAGGTGAGCATTCAGGAAAGTGACCACCATTTCTGCGGCGGCTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 90 bp | AGAGGAAGGCAGATGGGCACCGTCAGCTCATTGAACGTCAAGGGCTaGGCTAGCAGCAACAAGGCAATGTCGTTGTCCATGTTCAGCCGT | + |
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Preference number: 6 (lower is better) Translates to: RGRQMGTVSSLNVKG*ASSNKAMSLSMFSR Trigger: ACGGCTGAACATGGACAACGACATTGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGAGCTGACGGTGCCCATCTGCCTTCCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 72 bp | CAGATGGGCACCGTCAGCTCATTGAACGTCAAGGGCTaGGCTAGCAGCAACAAGGCAATGTCGTTGTCCATG | + |
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Preference number: 6 (lower is better) Translates to: QMGTVSSLNVKG*ASSNKAMSLSM Trigger: CATGGACAACGACATTGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGAGCTGACGGTGCCCATCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS TCA 72 bp | CCCCCACTGGCAAGCATCGTAGCTCTCATTACCATATaGGGCACACAGCATGTTTGTGGTGAGGCTGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: PPLASIVALITI*GTQHVCGEAGK Trigger: TTTCCCAGCCTCACCACAAACATGCTGTGTGCCTCATATGGTAATGAGAGCTACGATGCTTGCCAGTGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171503.8 |
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| CDS CCA 72 bp | GAAATGGTGGTCACTTTCCTGAATGCTCACCTGCCATaGAAACTCACCCAGCTCAGCCTCCTGCCCTTCTAT | + |
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Preference number: 6 (lower is better) Translates to: EMVVTFLNAHLP*KLTQLSLLPFY Trigger: ATAGAAGGGCAGGAGGCTGAGCTGGGTGAGTTTCCATGGCAGGTGAGCATTCAGGAAAGTGACCACCATTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 72 bp | GTCAAGGGCTTGGCTAGCAGCAACAAGGCAATGTCGTaGTCCATGTTCAGCCGTTTAAAGCCTTTGTGCCGG | + |
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Preference number: 6 (lower is better) Translates to: VKGLASSNKAMS*SMFSRLKPLCR Trigger: CCGGCACAAAGGCTTTAAACGGCTGAACATGGACAACGACATTGCCTTGTTGCTGCTAGCCAAGCCCTTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 90 bp | ATGATACGCATGGGCACCTTCATCAGATCCGTTGACATAGATTCCTaGTCAGTTGAGTTGGTTACGCCCCATCCTGCCACCCAGCATTCG | + |
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Preference number: 6 (lower is better) Translates to: MIRMGTFIRSVDIDS*SVELVTPHPATQHS Trigger: CGAATGCTGGGTGGCAGGATGGGGCGTAACCAACTCAACTGACAAGGAATCTATGTCAACGGATCTGATGAAGGTGCCCATGCGTATCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS TCA 72 bp | GTCACCCTGGCAAGCATCGTAGCTCTCATTACCATATaGGGCACACAGCATGTTTGTGGTGAGGCTGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VTLASIVALITI*GTQHVCGEAGK Trigger: TTTCCCAGCCTCACCACAAACATGCTGTGTGCCTCATATGGTAATGAGAGCTACGATGCTTGCCAGGGTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089338.6 |
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| CDS CAA 72 bp | TGCTATCATACAGGGGTCTCACACCACACTCAACATTaGCTTCCAGGGTGTGGGCAACAAGTAGCAGGATGG | + |
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Preference number: 6 (lower is better) Translates to: CYHTGVSHHTQH*LPGCGQQVAGW Trigger: CCATCCTGCTACTTGTTGCCCACACCCTGGAAGCAAATGTTGAGTGTGGTGTGAGACCCCTGTATGATAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 72 bp | ATCAGATCCGTTGACATAGATTCCTTGTCAGTTGAGTaGGTTACGCCCCATCCTGCCACCCAGCATTCGTGC | + |
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Preference number: 6 (lower is better) Translates to: IRSVDIDSLSVE*VTPHPATQHSC Trigger: GCACGAATGCTGGGTGGCAGGATGGGGCGTAACCAACTCAACTGACAAGGAATCTATGTCAACGGATCTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS TCA 72 bp | AGCTCAGCCTCCTGCCCTTCTATGATCCTGGAGTATTaGATTCTGCTATCATACAGGGGTCTCACACCACAC | + |
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Preference number: 6 (lower is better) Translates to: SSASCPSMILEY*ILLSYRGLTPH Trigger: GTGTGGTGTGAGACCCCTGTATGATAGCAGAATTCAATACTCCAGGATCATAGAAGGGCAGGAGGCTGAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS GCA 72 bp | ATGTCGTTGTCCATGTTCAGCCGTTTAAAGCCTTTGTaGCGGATTATGGTGGTGACCTCTAGTTCCACGGGT | + |
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Preference number: 6 (lower is better) Translates to: MSLSMFSRLKPL*RIMVVTSSSTG Trigger: ACCCGTGGAACTAGAGGTCACCACCATAATCCGGCACAAAGGCTTTAAACGGCTGAACATGGACAACGACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 72 bp | CAGCTCAGCCTCCTGCCCTTCTATGATCCTGGAGTATaGAATTCTGCTATCATACAGGGGTCTCACACCACA | + |
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Preference number: 6 (lower is better) Translates to: QLSLLPFYDPGV*NSAIIQGSHTT Trigger: TGTGGTGTGAGACCCCTGTATGATAGCAGAATTCAATACTCCAGGATCATAGAAGGGCAGGAGGCTGAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 72 bp | GCAATGTCGTTGTCCATGTTCAGCCGTTTAAAGCCTTaGTGCCGGATTATGGTGGTGACCTCTAGTTCCACG | + |
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Preference number: 6 (lower is better) Translates to: AMSLSMFSRLKP*CRIMVVTSSST Trigger: CGTGGAACTAGAGGTCACCACCATAATCCGGCACAAAGGCTTTAAACGGCTGAACATGGACAACGACATTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 90 bp | AGCAACAAGGCAATGTCGTTGTCCATGTTCAGCCGTTTAAAGCCTTaGTGCCGGATTATGGTGGTGACCTCTAGTTCCACGGGTGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: SNKAMSLSMFSRLKP*CRIMVVTSSSTGEV Trigger: TACTTCACCCGTGGAACTAGAGGTCACCACCATAATCCGGCACAAAGGCTTTAAACGGCTGAACATGGACAACGACATTGCCTTGTTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 90 bp | TCATTGAACGTCAAGGGCTTGGCTAGCAGCAACAAGGCAATGTCGTaGTCCATGTTCAGCCGTTTAAAGCCTTTGTGCCGGATTATGGTG | + |
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Preference number: 6 (lower is better) Translates to: SLNVKGLASSNKAMS*SMFSRLKPLCRIMV Trigger: CACCATAATCCGGCACAAAGGCTTTAAACGGCTGAACATGGACAACGACATTGCCTTGTTGCTGCTAGCCAAGCCCTTGACGTTCAATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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| CDS CAA 72 bp | GTGACCTCTAGTTCCACGGGTGAAGTAGTTAAGTCATaGGTTCCCACTCTGACTCTGAGATCTGTTGGGGAA | + |
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Preference number: 6 (lower is better) Translates to: VTSSSTGEVVKS*VPTLTLRSVGE Trigger: TTCCCCAACAGATCTCAGAGTCAGAGTGGGAACCAATGACTTAACTACTTCACCCGTGGAACTAGAGGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089338.6 ENSMUST00000171503.8 |
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