Pregenerated sensors for PRSS43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058398Ensembl transcript IDs: ENSMUST00000077549.7
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGGATGTGACCACTGAGGTACTGAGGAAGGGGGCCAGGCAGGACTaGCTTCTTGTGAAGCCTATGAGGCAGAGGCTATGCATTCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: LDVTTEVLRKGARQD*LLVKPMRQRLCIPW Trigger: CCAGGGAATGCATAGCCTCTGCCTCATAGGCTTCACAAGAAGGCAGTCCTGCCTGGCCCCCTTCCTCAGTACCTCAGTGGTCACATCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR GCA 90 bp | CCAAGTGGGTACAAGATAATTTCTGCCAGCTCCCAAATACTTAAGTaGCAACCTCATACCTCTGTAGGGAGTTGCCAGTGTTCCCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: PSGYKIISASSQILK*QPHTSVGSCQCSLP Trigger: AGGAAGGGAACACTGGCAACTCCCTACAGAGGTATGAGGTTGGCACTTAAGTATTTGGGAGCTGGCAGAAATTATCTTGTACCCACTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR CCA 90 bp | CCCCCAATCTCCCTGCCACAGTCTACTGTGGCAATAGCTGCTAACTaGAATTTGAAGAAAGGGCAGAAAGACAGAAAGGGAAAATGGAGA | + |
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Preference number: 1 (lower is better) Translates to: PPISLPQSTVAIAAN*NLKKGQKDRKGKWR Trigger: TCTCCATTTTCCCTTTCTGTCTTTCTGCCCTTTCTTCAAATTCCAGTTAGCAGCTATTGCCACAGTAGACTGTGGCAGGGAGATTGGGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR-3UTR CCA 90 bp | GACTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGAGCTGGGATTGCAATAGCTGCTAACTaGAATTTGAAGAAAGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: DWPQTQKSACLCLPRAGIAIAAN*NLKKGQ Trigger: CTGCCCTTTCTTCAAATTCCAGTTAGCAGCTATTGC...AATCCCAGCTCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR-3UTR CCA 90 bp | TGTGTGCCACCACACCCGGTTGTTCTCCCTCTCTTTCAGTGGTCACTAAGCTGTATGTCCCCAAGATCATaGAGTCATGGTTCTCCACCT | + |
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Preference number: 2 (lower is better) Translates to: CVPPHPVVLPLFQWSLSCMSPRS*SHGSPP Trigger: AGGTGGAGAACCATGACTCCATGATCTTGGGGACAT...ACAGCTTAGTGACCACTGAAAGAGAGGGAGAACAACCGGGTGTGGTGGCACACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR-3UTR TCA 90 bp | TCATGGAGTCATGGTTCTCCACCTAGCAGGCAAGCTGGCCCTCTAGTCCAGGTTCTGCTAACTGGAATTTaGAGAAAGGGCAGAAAGACA | + |
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Preference number: 2 (lower is better) Translates to: SWSHGSPPSRQAGPLVQVLLTGI*RKGRKT Trigger: TGTCTTTCTGCCCTTTCTTCAAATTCCAGTTAGCAG...AACCTGGACTAGAGGGCCAGCTTGCCTGCTAGGTGGAGAACCATGACTCCATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR GCA 72 bp | ACCACTGAGGTACTGAGGAAGGGGGCCAGGCAGGACTaGCTTCTTGTGAAGCCTATGAGGCAGAGGCTATGC | + |
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Preference number: 3 (lower is better) Translates to: TTEVLRKGARQD*LLVKPMRQRLC Trigger: GCATAGCCTCTGCCTCATAGGCTTCACAAGAAGGCAGTCCTGCCTGGCCCCCTTCCTCAGTACCTCAGTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR GCA 72 bp | AGATTTTTAGACTGGCCTCAAACTCAGAAATCCGCCTaGCTCTGCCTCCCGAGAGCTGGGATTACAGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: RFLDWPQTQKSA*LCLPRAGITGV Trigger: CACACCTGTAATCCCAGCTCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGTCTAAAAATCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR CCA 72 bp | GATATTATCTCTTCTTGGCAGATGTCCCCAAGATCATaGAGTCATGGTTCTCCACCTAGCAGGCAAGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: DIISSWQMSPRS*SHGSPPSRQAG Trigger: GCCAGCTTGCCTGCTAGGTGGAGAACCATGACTCCATGATCTTGGGGACATCTGCCAAGAAGAGATAATATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR-3UTR CAA 90 bp | AGATTCCCAAGTGGGTACAAGATAATTTCTGCCAGCTCCCAAATACTTAAGTGCACCAGTCAGAGCACTTaGCAGCCCCCAATCTCCCTG | + |
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Preference number: 3 (lower is better) Translates to: RFPSGYKIISASSQILKCTSQST*QPPISL Trigger: CAGGGAGATTGGGGGCTGCAAAGTGCTCTGACTGGT...GCACTTAAGTATTTGGGAGCTGGCAGAAATTATCTTGTACCCACTTGGGAATCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR CCA 72 bp | AGGCAGAGGCTATGCATTCCCTGGCAGATTCCCAAGTaGGTACAAGATAATTTCTGCCAGCTCCCAAATACT | + |
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Preference number: 3 (lower is better) Translates to: RQRLCIPWQIPK*VQDNFCQLPNT Trigger: AGTATTTGGGAGCTGGCAGAAATTATCTTGTACCCACTTGGGAATCTGCCAGGGAATGCATAGCCTCTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR CCA 72 bp | CTTGTGAAGCCTATGAGGCAGAGGCTATGCATTCCCTaGCAGATTCCCAAGTGGGTACAAGATAATTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: LVKPMRQRLCIP*QIPKWVQDNFC Trigger: GCAGAAATTATCTTGTACCCACTTGGGAATCTGCCAGGGAATGCATAGCCTCTGCCTCATAGGCTTCACAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR TCA 72 bp | GTGGTCACTAAGCTGTGTGATGTAAACAGAGCCAGGTaGTATTATCTCTTCTTGGCAGATGTCCCCAAGATC | + |
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Preference number: 3 (lower is better) Translates to: VVTKLCDVNRAR*YYLFLADVPKI Trigger: GATCTTGGGGACATCTGCCAAGAAGAGATAATATCACCTGGCTCTGTTTACATCACACAGCTTAGTGACCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| 3UTR GCA 72 bp | TACAAGATAATTTCTGCCAGCTCCCAAATACTTAAGTaGCAACCTCATACCTCTGTAGGGAGTTGCCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: YKIISASSQILK*QPHTSVGSCQC Trigger: ACACTGGCAACTCCCTACAGAGGTATGAGGTTGGCACTTAAGTATTTGGGAGCTGGCAGAAATTATCTTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR GCA 90 bp | TCCCCAAGATCATGGAGTCATGGTTCTCCACCTAGCAGGCAAGCTGGCCCTCTAGGCCTCTGGGGCCGGTaGATCACTCCGGAATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: SPRSWSHGSPPSRQAGPLGLWGR*ITPESS Trigger: GGAAGATTCCGGAGTGATGCACCGGCCCCAGAGGCC...TAGAGGGCCAGCTTGCCTGCTAGGTGGAGAACCATGACTCCATGATCTTGGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR TCA 90 bp | TGTGTGCCACCACACCCGGTTGTTCTCCCTCTCTTTCAGTGGTCACTAAGCTGTGGCACACGGGCTGGATaGGCGAGGAGTAATTCACGG | + |
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Preference number: 4 (lower is better) Translates to: CVPPHPVVLPLFQWSLSCGTRAG*ARSNSR Trigger: CCGTGAATTACTCCTCGCTCATCCAGCCCGTGTGCC...ACAGCTTAGTGACCACTGAAAGAGAGGGAGAACAACCGGGTGTGGTGGCACACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR TCA 90 bp | GACTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGAGCTGGGATTACAAAGACTCTGTCCTaGGTCTTGCAGACCGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: DWPQTQKSACLCLPRAGITKTLS*VLQTAD Trigger: ATCTGCGGTCTGCAAGACTCAGGACAGAGTCTTTGT...AATCCCAGCTCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR TCA 90 bp | GACTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGAGCTGGGATTCAAACATGCTCATTTTaGCTCTGCAGACTCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: DWPQTQKSACLCLPRAGIQTCSF*LCRLTC Trigger: GCAGGTGAGTCTGCAGAGTCAAAATGAGCATGTTTG...AATCCCAGCTCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR CCA 90 bp | AGATTCCCAAGTGGGTACAAGATAATTTCTGCCAGCTCCCAAATACTTAAGTGCCTGTGCCGGGGCCTCTaGGTCACTCCGGGGTCTCCG | + |
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Preference number: 4 (lower is better) Translates to: RFPSGYKIISASSQILKCLCRGL*VTPGSP Trigger: CGGAGACCCCGGAGTGACCCAGAGGCCCCGGCACAG...GCACTTAAGTATTTGGGAGCTGGCAGAAATTATCTTGTACCCACTTGGGAATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR CCA 90 bp | CTCTCCAGAACCTCAACGCAACTTGGGATGACCCTGGATGTGACCACTGAGGTATCAATTTCGTTCTGTTaGCCCCAGCCAGTCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: LSRTSTQLGMTLDVTTEVSISFC*PQPVTQ Trigger: CTGGGTGACTGGCTGGGGCCAACAGAACGAAATTGA...TACCTCAGTGGTCACATCCAGGGTCATCCCAAGTTGCGTTGAGGTTCTGGAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR CCA 90 bp | TCCCCAAGATCATGGAGTCATGGTTCTCCACCTAGCAGGCAAGCTGGCCCTCTACCTCCTGGAGGAGAATaGATGCAAACCCTGCATCAA | + |
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Preference number: 4 (lower is better) Translates to: SPRSWSHGSPPSRQAGPLPPGGE*MQTLHQ Trigger: TTGATGCAGGGTTTGCATCCATTCTCCTCCAGGAGG...TAGAGGGCCAGCTTGCCTGCTAGGTGGAGAACCATGACTCCATGATCTTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR TCA 90 bp | TCCCCAAGATCATGGAGTCATGGTTCTCCACCTAGCAGGCAAGCTGGCCCTCTAGATGTCTGTGTAAACTaGGAGGACAGGGACTCCATT | + |
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Preference number: 4 (lower is better) Translates to: SPRSWSHGSPPSRQAGPLDVCVN*EDRDSI Trigger: AATGGAGTCCCTGTCCTCTCAGTTTACACAGACATC...TAGAGGGCCAGCTTGCCTGCTAGGTGGAGAACCATGACTCCATGATCTTGGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR GCA 90 bp | TCCCCAAGATCATGGAGTCATGGTTCTCCACCTAGCAGGCAAGCTGGCCCTCTAGGAACTCCTGAAGGGTaGGAAATACTCAGGGATTTC | + |
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Preference number: 4 (lower is better) Translates to: SPRSWSHGSPPSRQAGPLGTPEG*EILRDF Trigger: GAAATCCCTGAGTATTTCGCACCCTTCAGGAGTTCC...TAGAGGGCCAGCTTGCCTGCTAGGTGGAGAACCATGACTCCATGATCTTGGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR CCA 90 bp | GCCACCACACCCGGTTGTTCTCCCTCTCTTTCAGTGGTCACTAAGCTGTGTGATTGCTCATATATGCAGTaGGCCGCAGTCAACACCCAT | + |
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Preference number: 4 (lower is better) Translates to: ATTPGCSPSLSVVTKLCDCSYMQ*AAVNTH Trigger: ATGGGTGTTGACTGCGGCCCACTGCATATATGAGCA...ATCACACAGCTTAGTGACCACTGAAAGAGAGGGAGAACAACCGGGTGTGGTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR CCA 90 bp | CCCCCAATCTCCCTGCCACAGTCTACTGTGGCAATAGCTGCTAACTGGAATTTGGGGAAAATGATGTCCTaGACTGGGACCAGGGTCACA | + |
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Preference number: 4 (lower is better) Translates to: PPISLPQSTVAIAANWNLGKMMS*TGTRVT Trigger: TGTGACCCTGGTCCCAGTCCAGGACATCATTTTCCC...CAAATTCCAGTTAGCAGCTATTGCCACAGTAGACTGTGGCAGGGAGATTGGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR GCA 90 bp | GACTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGAGCTGGGATTAATGGATGCAAACCCTaGATCAATTTCGTTCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: DWPQTQKSACLCLPRAGINGCKP*INFVLL Trigger: CAACAGAACGAAATTGATGCAGGGTTTGCATCCATT...AATCCCAGCTCTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR GCA 90 bp | CTCTCCAGAACCTCAACGCAACTTGGGATGACCCTGGATGTGACCACTGAGGTAAACAGCGTGTTACAGTaGTTCTGGAGGAGAATGCGT | + |
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Preference number: 4 (lower is better) Translates to: LSRTSTQLGMTLDVTTEVNSVLQ*FWRRMR Trigger: ACGCATTCTCCTCCAGAAGCACTGTAACACGCTGTT...TACCTCAGTGGTCACATCCAGGGTCATCCCAAGTTGCGTTGAGGTTCTGGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR TCA 90 bp | TCCCCAAGATCATGGAGTCATGGTTCTCCACCTAGCAGGCAAGCTGGCCCTCTATCATTCCTCATGGTTTaGATGTCAAAGTTGGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: SPRSWSHGSPPSRQAGPLSFLMV*MSKLEG Trigger: CCCTTCCAACTTTGACATTCAAACCATGAGGAATGA...TAGAGGGCCAGCTTGCCTGCTAGGTGGAGAACCATGACTCCATGATCTTGGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR TCA 90 bp | AGATTCCCAAGTGGGTACAAGATAATTTCTGCCAGCTCCCAAATACTTAAGTGCAGTTGGAAGGGAAAATaGTGTCCTGGACTGGGACCA | + |
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Preference number: 4 (lower is better) Translates to: RFPSGYKIISASSQILKCSWKGK*CPGLGP Trigger: TGGTCCCAGTCCAGGACATCATTTTCCCTTCCAACT...GCACTTAAGTATTTGGGAGCTGGCAGAAATTATCTTGTACCCACTTGGGAATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR CAA 90 bp | TCATGGAGTCATGGTTCTCCACCTAGCAGGCAAGCTGGCCCTCTAGTCCAGGTTGGGACTCCATTGCAGTaGATGCCCCAGCTCATGATC | + |
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Preference number: 5 (lower is better) Translates to: SWSHGSPPSRQAGPLVQVGTPLQ*MPQLMI Trigger: GATCATGAGCTGGGGCATCAACTGCAATGGAGTCCC...AACCTGGACTAGAGGGCCAGCTTGCCTGCTAGGTGGAGAACCATGACTCCATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS TCA 90 bp | GCCGGTGCATCACTCCGGAATCTTCCCTGGGTTTGTAAGTACCACTaGACAAAGGCTGAAGAAGCTGAAGCCAGACCAGGAGGGCTAGGA | + |
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Preference number: 5 (lower is better) Translates to: AGASLRNLPWVCKYH*TKAEEAEARPGGLG Trigger: TCCTAGCCCTCCTGGTCTGGCTTCAGCTTCTTCAGCCTTTGTTCAGTGGTACTTACAAACCCAGGGAAGATTCCGGAGTGATGCACCGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS GCA 90 bp | GAGAATGCGTTGCTGAACCTCCTGGAGGAGAATGGATGCAAACCCTaGATCAATTTCGTTCTGTTGGCCCCAGCCAGTCACCCAGCACAC | + |
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Preference number: 5 (lower is better) Translates to: ENALLNLLEENGCKP*INFVLLAPASHPAH Trigger: GTGTGCTGGGTGACTGGCTGGGGCCAACAGAACGAAATTGATGCAGGGTTTGCATCCATTCTCCTCCAGGAGGTTCAGCAACGCATTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS TCA 90 bp | CTCTGGAACAGCGTGTTACAGTGCTTCTGGAGGAGAATGCGTTGCTaGACCTCCTGGAGGAGAATGGATGCAAACCCTGCATCAATTTCG | + |
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Preference number: 5 (lower is better) Translates to: LWNSVLQCFWRRMRC*TSWRRMDANPASIS Trigger: CGAAATTGATGCAGGGTTTGCATCCATTCTCCTCCAGGAGGTTCAGCAACGCATTCTCCTCCAGAAGCACTGTAACACGCTGTTCCAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS TCA 90 bp | AGACTCCCATGGGATCCATACGGGAAGCCTGACTTAAGACATAGCTaGCCCACTCATTGTACTCAGCGATGTCTGTGTAAACTGAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: RLPWDPYGKPDLRHS*PTHCTQRCLCKLRG Trigger: TCCTCTCAGTTTACACAGACATCGCTGAGTACAATGAGTGGGTCAGCTATGTCTTAAGTCAGGCTTCCCGTATGGATCCCATGGGAGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS-3UTR CAA 90 bp | CTCTCCAGAACCTCAACGCAACTTGGGATGACCCTGGATGTGACCACTGAGGTAGTCATTCCTCATGGTTaGAATGTCAAAGTTGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: LSRTSTQLGMTLDVTTEVVIPHG*NVKVGR Trigger: CCTTCCAACTTTGACATTCAAACCATGAGGAATGAC...TACCTCAGTGGTCACATCCAGGGTCATCCCAAGTTGCGTTGAGGTTCTGGAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS TCA 90 bp | CAATGTCATTCCTCATGGTTTGAATGTCAAAGTTGGAAGGGAAAATaGTGTCCTGGACTGGGACCAGGGTCACACTTTCAGATTCAGAAT | + |
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Preference number: 5 (lower is better) Translates to: QCHSSWFECQSWKGK*CPGLGPGSHFQIQN Trigger: ATTCTGAATCTGAAAGTGTGACCCTGGTCCCAGTCCAGGACATCATTTTCCCTTCCAACTTTGACATTCAAACCATGAGGAATGACATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS GCA 72 bp | GTGCGAAATACTCAGGGATTTCAAGCGACTCTGCTGTaGCGGGGCCTCTGGGTCACTCCGGGGTCTCCGGGG | + |
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Preference number: 6 (lower is better) Translates to: VRNTQGFQATLL*RGLWVTPGSPG Trigger: CCCCGGAGACCCCGGAGTGACCCAGAGGCCCCGGCACAGCAGAGTCGCTTGAAATCCCTGAGTATTTCGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS GCA 72 bp | GAAGGGTGCGAAATACTCAGGGATTTCAAGCGACTCTaGTGTGCCGGGGCCTCTGGGTCACTCCGGGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: EGCEILRDFKRL*CAGASGSLRGL Trigger: GAGACCCCGGAGTGACCCAGAGGCCCCGGCACAGCAGAGTCGCTTGAAATCCCTGAGTATTTCGCACCCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS TCA 72 bp | CTCGGAAGGGCTCTTCGGGAAGGCACACGGGCTGGATaGGCGAGGAGTAATTCACGGGGAAGTACAGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: LGRALREGTRAG*ARSNSRGSTAE Trigger: CTCTGCTGTACTTCCCCGTGAATTACTCCTCGCTCATCCAGCCCGTGTGCCTTCCCGAAGAGCCCTTCCGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS CAA 90 bp | CTGTCTCTGGAACAGCGTGTTACAGTGCTTCTGGAGGAGAATGCGTaGCTGAACCTCCTGGAGGAGAATGGATGCAAACCCTGCATCAAT | + |
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Preference number: 6 (lower is better) Translates to: LSLEQRVTVLLEENA*LNLLEENGCKPCIN Trigger: ATTGATGCAGGGTTTGCATCCATTCTCCTCCAGGAGGTTCAGCAACGCATTCTCCTCCAGAAGCACTGTAACACGCTGTTCCAGAGACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS TCA 72 bp | GGGGTTCCCAGAATCTCCCCAACAAAGACTCTGTCCTaGGTCTTGCAGACCGCAGATCATCCCTTTAATCAC | + |
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Preference number: 6 (lower is better) Translates to: GVPRISPTKTLS*VLQTADHPFNH Trigger: GTGATTAAAGGGATGATCTGCGGTCTGCAAGACTCAGGACAGAGTCTTTGTTGGGGAGATTCTGGGAACCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS GCA 72 bp | GAGAATGCGTTGCTGAACCTCCTGGAGGAGAATGGATaGAAACCCTGCATCAATTTCGTTCTGTTGGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: ENALLNLLEENG*KPCINFVLLAP Trigger: TGGGGCCAACAGAACGAAATTGATGCAGGGTTTGCATCCATTCTCCTCCAGGAGGTTCAGCAACGCATTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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| CDS TCA 72 bp | TGGGATCCATACGGGAAGCCTGACTTAAGACATAGCTaGCCCACTCATTGTACTCAGCGATGTCTGTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: WDPYGKPDLRHS*PTHCTQRCLCK Trigger: TTTACACAGACATCGCTGAGTACAATGAGTGGGTCAGCTATGTCTTAAGTCAGGCTTCCCGTATGGATCCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077549.7 |
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