Pregenerated sensors for PRRX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039476Ensembl transcript IDs: ENSMUST00000041659.7, ENSMUST00000113592.9
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGCCCAGTTTGTCTGAGGACAGAGACAGACAAGGCTACTGCCTTTaGTGCAGTCTGCCATTGGGCCAGGGAGGAAGCTGGACCCAATGC | + |
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Preference number: 1 (lower is better) Translates to: LPSLSEDRDRQGYCL*CSLPLGQGGSWTQC Trigger: GCATTGGGTCCAGCTTCCTCCCTGGCCCAATGGCAGACTGCAGCAAAGGCAGTAGCCTTGTCTGTCTCTGTCCTCAGACAAACTGGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR-3UTR GCA 90 bp | GCGGACTCCAGCTCCGCCTTCTGGCCAGGCCACTCCAGGGGCCTTAGGCCACAAGCCTTTGCTGCAGTCTaGCATTGGGCCAGGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: ADSSSAFWPGHSRGLRPQAFAAV*HWAREE Trigger: TTCCTCCCTGGCCCAATGGCAGACTGCAGCAAAGGC...TTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCCAGAAGGCGGAGCTGGAGTCCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR-3UTR TCA 90 bp | ACTCCAGCTCCGCCTTCTGGCCAGGCCACTCCAGGGGCCTTAGGCCACAATCTCGCTGCCCAGTTTGTCTaGGGACAGAGACAGACAAGG | + |
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Preference number: 2 (lower is better) Translates to: TPAPPSGQATPGALGHNLAAQFV*GQRQTR Trigger: CCTTGTCTGTCTCTGTCCTCAGACAAACTGGGCAGC...GAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCCAGAAGGCGGAGCTGGAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR-3UTR CCA 90 bp | CGGACTCCAGCTCCGCCTTCTGGCCAGGCCACTCCAGGGGCCTTAGGCCACAATCACCCAACAGGCCTCTaGAACTCAGGAAGCTGTGAT | + |
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Preference number: 2 (lower is better) Translates to: RTPAPPSGQATPGALGHNHPTGL*NSGSCD Trigger: ATCACAGCTTCCTGAGTTCCAGAGGCCTGTTGGGTG...ATTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCCAGAAGGCGGAGCTGGAGTCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR-3UTR TCA 90 bp | GGCCAGGCCACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACGCTGCCCAGTTTGTCTaGGGACAGAGACAGACAAGG | + |
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Preference number: 2 (lower is better) Translates to: GQATPGALGHNLSHHSSDAAQFV*GQRQTR Trigger: CCTTGTCTGTCTCTGTCCTCAGACAAACTGGGCAGC...GTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR-3UTR GCA 90 bp | CAGGCCACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACTTGGGCTACTGCCTTTGCTaGAGTCTGCCATTGGGCCAG | + |
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Preference number: 2 (lower is better) Translates to: QATPGALGHNLSHHSSDLGYCLC*SLPLGQ Trigger: CTGGCCCAATGGCAGACTGCAGCAAAGGCAGTAGCC...CAAGTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR-3UTR GCA 90 bp | GGAGAAAAGGCACGGGAGAGGCTGCCCAGTTTGTCTGAGGACAGAGACAGACAAGCCTTTGCTGCAGTCTaGCATTGGGCCAGGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: GEKARERLPSLSEDRDRQAFAAV*HWAREE Trigger: TTCCTCCCTGGCCCAATGGCAGACTGCAGCAAAGGC...TTGTCTGTCTCTGTCCTCAGACAAACTGGGCAGCCTCTCCCGTGCCTTTTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR-3UTR GCA 90 bp | GGAGAAAAGGCACGGGAGAGGCTGCCCAGTTTGTCTGAGGACAGAGACAGACAAGGCTACTGCCTTTGCTaGAGTCTGCCATTGGGCCAG | + |
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Preference number: 2 (lower is better) Translates to: GEKARERLPSLSEDRDRQGYCLC*SLPLGQ Trigger: CTGGCCCAATGGCAGACTGCAGCAAAGGCAGTAGCC...TTGTCTGTCTCTGTCCTCAGACAAACTGGGCAGCCTCTCCCGTGCCTTTTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR GCA 72 bp | ACAGAGACAGACAAGGCTACTGCCTTTGCTGCAGTCTaGCATTGGGCCAGGGAGGAAGCTGGACCCAATGCA | + |
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Preference number: 3 (lower is better) Translates to: TETDKATAFAAV*HWAREEAGPNA Trigger: TGCATTGGGTCCAGCTTCCTCCCTGGCCCAATGGCAGACTGCAGCAAAGGCAGTAGCCTTGTCTGTCTCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR TCA 72 bp | TGGAGAAAAGGCACGGGAGAGGCTGCCCAGTTTGTCTaGGGACAGAGACAGACAAGGCTACTGCCTTTGCTG | + |
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Preference number: 3 (lower is better) Translates to: WRKGTGEAAQFV*GQRQTRLLPLL Trigger: CAGCAAAGGCAGTAGCCTTGTCTGTCTCTGTCCTCAGACAAACTGGGCAGCCTCTCCCGTGCCTTTTCTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR GCA 72 bp | CACAATCTCAGCCACCATAGCAGTGACTTGTTCAACTaGTTCCAGCACCCAACAGGCCTCTGGAACTCAGGA | + |
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Preference number: 3 (lower is better) Translates to: HNLSHHSSDLFN*FQHPTGLWNSG Trigger: TCCTGAGTTCCAGAGGCCTGTTGGGTGCTGGAAGCAGTTGAACAAGTCACTGCTATGGTGGCTGAGATTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR GCA 90 bp | CAGGCCACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACTTGGGACAGTCACCGTCCTaGGGCGCCGCCTCGCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: QATPGALGHNLSHHSSDLGQSPS*GAASLP Trigger: CGGCAGCGAGGCGGCGCCGCAGGACGGTGACTGTCC...CAAGTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS-3UTR CCA 90 bp | GGCCAGGCCACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACAAGTTCTTGCGCGCCTaGGCGCAATCGCCGGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: GQATPGALGHNLSHHSSDKFLRA*AQSPGA Trigger: CGCACCCGGCGATTGCGCCCAGGCGCGCAAGAACTT...GTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS-3UTR CCA 90 bp | AGGCACGGGAGAGGCTGCCCAGTTTGTCTGAGGACAGAGACAGACAAGGCTACTTGCCACGGCCGGGGCTaGGACAGTCACCCCAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: RHGRGCPVCLRTETDKATCHGRG*DSHPRR Trigger: CCGCCTGGGGTGACTGTCCCAGCCCCGGCCGTGGCA...AGTAGCCTTGTCTGTCTCTGTCCTCAGACAAACTGGGCAGCCTCTCCCGTGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113592.9 |
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| CDS-3UTR TCA 90 bp | AGTTCCTTGGCGGACTCCAGCTCCGCCTTCTGGCCAGGCCACTCCAGGGGCCTTAGGAGTTGCAGGACTTaGACCTCCGGGGCTATAGGG | + |
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Preference number: 4 (lower is better) Translates to: SSLADSSSAFWPGHSRGLRSCRT*TSGAIG Trigger: CCCTATAGCCCCGGAGGTTCAAGTCCTGCAACTCCT...AAGGCCCCTGGAGTGGCCTGGCCAGAAGGCGGAGCTGGAGTCCGCCAAGGAACT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CCA 90 bp | GCGGACTCCAGCTCCGCCTTCTGGCCAGGCCACTCCAGGGGCCTTAGGCCACAATCCAGCGCCTGCAGCTaGCTGCTGTTGAATGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: ADSSSAFWPGHSRGLRPQSSACS*LLLNVV Trigger: AACCACATTCAACAGCAGCCAGCTGCAGGCGCTGGA...TTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCCAGAAGGCGGAGCTGGAGTCCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR TCA 90 bp | ACTCCAGCTCCGCCTTCTGGCCAGGCCACTCCAGGGGCCTTAGGCCACAATCTCGCAGCTGGCTGCTGTTaGATGTGGTTCGATTCCGGC | + |
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Preference number: 4 (lower is better) Translates to: TPAPPSGQATPGALGHNLAAGCC*MWFDSG Trigger: GCCGGAATCGAACCACATTCAACAGCAGCCAGCTGC...GAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCCAGAAGGCGGAGCTGGAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR TCA 90 bp | ACTCCAGCTCCGCCTTCTGGCCAGGCCACTCCAGGGGCCTTAGGCCACAATCTCTGCTGTTGGCCATGTTaGCTCCAGGAGTTGCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: TPAPPSGQATPGALGHNLCCWPC*LQELQD Trigger: GTCCTGCAACTCCTGGAGTCAACATGGCCAACAGCA...GAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCCAGAAGGCGGAGCTGGAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR TCA 90 bp | CAGGCCACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACTTGCCTGGCCATAAGACTTaGGCAACGAGGCAGAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: QATPGALGHNLSHHSSDLPGHKT*ATRQSG Trigger: CCCGCTCTGCCTCGTTGCTCAAGTCTTATGGCCAGG...CAAGTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR TCA 90 bp | AGGCACGGGAGAGGCTGCCCAGTTTGTCTGAGGACAGAGACAGACAAGGCTACTGCAGCTGGCTGCTGTTaGATGTGGTTCGATTCCGGC | + |
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Preference number: 4 (lower is better) Translates to: RHGRGCPVCLRTETDKATAAGCC*MWFDSG Trigger: GCCGGAATCGAACCACATTCAACAGCAGCCAGCTGC...AGTAGCCTTGTCTGTCTCTGTCCTCAGACAAACTGGGCAGCCTCTCCCGTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR GCA 90 bp | GCTTCCAGCACCCAACAGGCCTCTGGAACTCAGGAAGCTGTGATGGAGAAAAGGTCACCGAGAAGTTCTTaGGCGCCTGGGCGCAATCGC | + |
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Preference number: 4 (lower is better) Translates to: ASSTQQASGTQEAVMEKRSPRSS*APGRNR Trigger: GCGATTGCGCCCAGGCGCGCAAGAACTTCTCGGTGA...CCTTTTCTCCATCACAGCTTCCTGAGTTCCAGAGGCCTGTTGGGTGCTGGAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS-3UTR CCA 90 bp | GCACGGGAGAGGCTGCCCAGTTTGTCTGAGGACAGAGACAGACAAGGCTACTGCGTGGGCACCTGGCTGTaGTGTAGGCTGAACTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: ARERLPSLSEDRDRQGYCVGTWL*CRLNSL Trigger: CAAAGAGTTCAGCCTACACCACAGCCAGGTGCCCAC...GCAGTAGCCTTGTCTGTCTCTGTCCTCAGACAAACTGGGCAGCCTCTCCCGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CCA 90 bp | CAGGCCACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACTTGTTCACTGTGGGCACCTaGCTGTGGTGTAGGCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: QATPGALGHNLSHHSSDLFTVGT*LWCRLN Trigger: GTTCAGCCTACACCACAGCCAGGTGCCCACAGTGAA...CAAGTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR TCA 90 bp | ACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACTTGTTCAACCCTGGCCATAAGACTTaGGCAACGAGGCAGAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: TPGALGHNLSHHSSDLFNPGHKT*ATRQSG Trigger: CCCGCTCTGCCTCGTTGCTCAAGTCTTATGGCCAGG...GTTGAACAAGTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CCA 90 bp | CTGAGGACAGAGACAGACAAGGCTACTGCCTTTGCTGCAGTCTGCCATTGGGCCTTGGCACGGCGGTTCTaGAACCAGACTTGGACACGT | + |
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Preference number: 4 (lower is better) Translates to: LRTETDKATAFAAVCHWALARRF*NQTWTR Trigger: ACGTGTCCAAGTCTGGTTCCAGAACCGCCGTGCCAA...GGCCCAATGGCAGACTGCAGCAAAGGCAGTAGCCTTGTCTGTCTCTGTCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CCA 90 bp | CTGAGGACAGAGACAGACAAGGCTACTGCCTTTGCTGCAGTCTGCCATTGGGCCTTCACTGTGGGCACCTaGCTGTGGTGTAGGCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: LRTETDKATAFAAVCHWAFTVGT*LWCRLN Trigger: GTTCAGCCTACACCACAGCCAGGTGCCCACAGTGAA...GGCCCAATGGCAGACTGCAGCAAAGGCAGTAGCCTTGTCTGTCTCTGTCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CCA 90 bp | GGAGAAAAGGCACGGGAGAGGCTGCCCAGTTTGTCTGAGGACAGAGACAGACAATTGGCACGGCGGTTCTaGAACCAGACTTGGACACGT | + |
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Preference number: 4 (lower is better) Translates to: GEKARERLPSLSEDRDRQLARRF*NQTWTR Trigger: ACGTGTCCAAGTCTGGTTCCAGAACCGCCGTGCCAA...TTGTCTGTCTCTGTCCTCAGACAAACTGGGCAGCCTCTCCCGTGCCTTTTCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CCA 90 bp | GCTTCCAGCACCCAACAGGCCTCTGGAACTCAGGAAGCTGTGATGGAGAAAAGGGTGGGCACCTGGCTGTaGTGTAGGCTGAACTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: ASSTQQASGTQEAVMEKRVGTWL*CRLNSL Trigger: CAAAGAGTTCAGCCTACACCACAGCCAGGTGCCCAC...CCTTTTCTCCATCACAGCTTCCTGAGTTCCAGAGGCCTGTTGGGTGCTGGAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| 3UTR CAA 72 bp | GCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACTaGTTCAACTGCTTCCAGCACCCAACAGGCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: ALGHNLSHHSSD*FNCFQHPTGLW Trigger: CCAGAGGCCTGTTGGGTGCTGGAAGCAGTTGAACAAGTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR TCA 90 bp | ACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACTTGTTCAACTGCTGTTGGCCATGTTaGCTCCAGGAGTTGCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: TPGALGHNLSHHSSDLFNCCWPC*LQELQD Trigger: GTCCTGCAACTCCTGGAGTCAACATGGCCAACAGCA...GTTGAACAAGTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CCA 90 bp | AGTGACTTGTTCAACTGCTTCCAGCACCCAACAGGCCTCTGGAACTCAGGAAGCTCCAGCGCCTGCAGCTaGCTGCTGTTGAATGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: SDLFNCFQHPTGLWNSGSSSACS*LLLNVV Trigger: AACCACATTCAACAGCAGCCAGCTGCAGGCGCTGGA...GCTTCCTGAGTTCCAGAGGCCTGTTGGGTGCTGGAAGCAGTTGAACAAGTCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS GCA 90 bp | TTCTTTCGTTTGGTGCCACGGCCGGGGCTGGGACAGTCACCGTCCTaGGGCGCCGCCTCGCTGCCGCTGCTGCCCCCGGACGGTTCGCGC | + |
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Preference number: 5 (lower is better) Translates to: FFRLVPRPGLGQSPS*GAASLPLLPPDGSR Trigger: GCGCGAACCGTCCGGGGGCAGCAGCGGCAGCGAGGCGGCGCCGCAGGACGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAA 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS-3UTR CAA 90 bp | GGCCAGGCCACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACCTCACCGAGAAGTTCTaGCGCGCCTGGGCGCAATCG | + |
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Preference number: 5 (lower is better) Translates to: GQATPGALGHNLSHHSSDLTEKF*RAWAQS Trigger: CGATTGCGCCCAGGCGCGCAAGAACTTCTCGGTGAG...GTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS-3UTR CAA 90 bp | GCGGACTCCAGCTCCGCCTTCTGGCCAGGCCACTCCAGGGGCCTTAGGCCACAAATGCTGTTGGCCATGTaGACTCCAGGAGTTGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: ADSSSAFWPGHSRGLRPQMLLAM*TPGVAG Trigger: TCCTGCAACTCCTGGAGTCAACATGGCCAACAGCAT...TTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCCAGAAGGCGGAGCTGGAGTCCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CAA 90 bp | CGGACTCCAGCTCCGCCTTCTGGCCAGGCCACTCCAGGGGCCTTAGGCCACAATTGTAGGCTGAACTCTTaGGCCTTGAGGCGAAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: RTPAPPSGQATPGALGHNCRLNS*ALRRRL Trigger: CAGCCTTCGCCTCAAGGCCAAAGAGTTCAGCCTACA...ATTGTGGCCTAAGGCCCCTGGAGTGGCCTGGCCAGAAGGCGGAGCTGGAGTCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS TCA 90 bp | GCTGGCGATGCTGTTGGCCATGTTGACTCCAGGAGTTGCAGGACTTaGACCTCCGGGGCTATAGGGAGGCACGGAGCTGTAGGGGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: AGDAVGHVDSRSCRT*TSGAIGRHGAVGGG Trigger: TCCTCCCCCTACAGCTCCGTGCCTCCCTATAGCCCCGGAGGTTCAAGTCCTGCAACTCCTGGAGTCAACATGGCCAACAGCATCGCCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CAA 90 bp | CTGAGGACAGAGACAGACAAGGCTACTGCCTTTGCTGCAGTCTGCCATTGGGCCATGCTGTTGGCCATGTaGACTCCAGGAGTTGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: LRTETDKATAFAAVCHWAMLLAM*TPGVAG Trigger: TCCTGCAACTCCTGGAGTCAACATGGCCAACAGCAT...GGCCCAATGGCAGACTGCAGCAAAGGCAGTAGCCTTGTCTGTCTCTGTCCTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CAA 90 bp | AGTGACTTGTTCAACTGCTTCCAGCACCCAACAGGCCTCTGGAACTCAGGAAGCCTGAACTCTTTGGCCTaGAGGCGAAGGCTGGCGATG | + |
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Preference number: 5 (lower is better) Translates to: SDLFNCFQHPTGLWNSGSLNSLA*RRRLAM Trigger: CATCGCCAGCCTTCGCCTCAAGGCCAAAGAGTTCAG...GCTTCCTGAGTTCCAGAGGCCTGTTGGGTGCTGGAAGCAGTTGAACAAGTCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CAA 90 bp | ACTCCAGGGGCCTTAGGCCACAATCTCAGCCACCATAGCAGTGACTTGTTCAACCTGAACTCTTTGGCCTaGAGGCGAAGGCTGGCGATG | + |
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Preference number: 5 (lower is better) Translates to: TPGALGHNLSHHSSDLFNLNSLA*RRRLAM Trigger: CATCGCCAGCCTTCGCCTCAAGGCCAAAGAGTTCAG...GTTGAACAAGTCACTGCTATGGTGGCTGAGATTGTGGCCTAAGGCCCCTGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS-3UTR CAA 90 bp | GCTTCCAGCACCCAACAGGCCTCTGGAACTCAGGAAGCTGTGATGGAGAAAAGGTGTAGGCTGAACTCTTaGGCCTTGAGGCGAAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: ASSTQQASGTQEAVMEKRCRLNS*ALRRRL Trigger: CAGCCTTCGCCTCAAGGCCAAAGAGTTCAGCCTACA...CCTTTTCTCCATCACAGCTTCCTGAGTTCCAGAGGCCTGTTGGGTGCTGGAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS GCA 72 bp | GACAGTCACCGTCCTGCGGCGCCGCCTCGCTGCCGCTaGTGCCCCCGGACGGTTCGCGCGCCGCTCCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: DSHRPAAPPRCR*CPRTVRAPLPP Trigger: GGGAGGGAGCGGCGCGCGAACCGTCCGGGGGCAGCAGCGGCAGCGAGGCGGCGCCGCAGGACGGTGACTGTC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS CCA 72 bp | TCCAGGAGGTGGCTCACCGAGAAGTTCTTGCGCGCCTaGGCGCAATCGCCGGGTGCGGGCGGGGGCCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: SRRWLTEKFLRA*AQSPGAGGGPG Trigger: CCCGGGGCCCCCGCCCGCACCCGGCGATTGCGCCCAGGCGCGCAAGAACTTCTCGGTGAGCCACCTCCTGGA 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS GCA 72 bp | TGGTTCGATTCCGGCGCTGCTTCTTCTTTCGTTTGGTaGCACGGCCGGGGCTGGGACAGTCACCCCAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: WFDSGAASSFVW*HGRGWDSHPRR Trigger: CCGCCTGGGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAAGAAGCAGCGCCGGAATCGAACCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113592.9 |
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| CDS CCA 72 bp | GCTGCTTCTTCTTTCGTTTGGTGCCACGGCCGGGGCTaGGACAGTCACCCCAGGCGGAAGGCGCAGTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: AASSFVWCHGRG*DSHPRRKAQSA Trigger: AGCTGACTGCGCCTTCCGCCTGGGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAAGAAGCAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113592.9 |
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| CDS GCA 72 bp | TGGTTCGATTCCGGCGCTGCTTCTTCTTTCGTTTGGTaGCACGGCCGGGGCTGGGACAGTCACCGTCCTGCG | + |
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Preference number: 6 (lower is better) Translates to: WFDSGAASSFVW*HGRGWDSHRPA Trigger: CGCAGGACGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAAGAAGCAGCGCCGGAATCGAACCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS CAA 90 bp | CTGCTGTTGAATGTGGTTCGATTCCGGCGCTGCTTCTTCTTTCGTTaGGTGCCACGGCCGGGGCTGGGACAGTCACCGTCCTGCGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: LLLNVVRFRRCFFFR*VPRPGLGQSPSCGA Trigger: GGCGCCGCAGGACGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAAGAAGCAGCGCCGGAATCGAACCACATTCAACAGCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS CAA 90 bp | CTGCTGTTGAATGTGGTTCGATTCCGGCGCTGCTTCTTCTTTCGTTaGGTGCCACGGCCGGGGCTGGGACAGTCACCCCAGGCGGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LLLNVVRFRRCFFFR*VPRPGLGQSPQAEG Trigger: GCCTTCCGCCTGGGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAAGAAGCAGCGCCGGAATCGAACCACATTCAACAGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113592.9 |
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| CDS CCA 72 bp | ATGTGGTTCGATTCCGGCGCTGCTTCTTCTTTCGTTTaGTGCCACGGCCGGGGCTGGGACAGTCACCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: MWFDSGAASSFV*CHGRGWDSHPR Trigger: CCTGGGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAAGAAGCAGCGCCGGAATCGAACCACAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113592.9 |
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| CDS CCA 72 bp | ATGTGGTTCGATTCCGGCGCTGCTTCTTCTTTCGTTTaGTGCCACGGCCGGGGCTGGGACAGTCACCGTCCT | + |
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Preference number: 6 (lower is better) Translates to: MWFDSGAASSFV*CHGRGWDSHRP Trigger: AGGACGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAAGAAGCAGCGCCGGAATCGAACCACAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS CAA 72 bp | AATGTGGTTCGATTCCGGCGCTGCTTCTTCTTTCGTTaGGTGCCACGGCCGGGGCTGGGACAGTCACCGTCC | + |
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Preference number: 6 (lower is better) Translates to: NVVRFRRCFFFR*VPRPGLGQSPS Trigger: GGACGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAAGAAGCAGCGCCGGAATCGAACCACATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041659.7 |
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| CDS CAA 72 bp | AATGTGGTTCGATTCCGGCGCTGCTTCTTCTTTCGTTaGGTGCCACGGCCGGGGCTGGGACAGTCACCCCAG | + |
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Preference number: 6 (lower is better) Translates to: NVVRFRRCFFFR*VPRPGLGQSPQ Trigger: CTGGGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAACGAAAGAAGAAGCAGCGCCGGAATCGAACCACATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113592.9 |
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| CDS CCA 72 bp | TGTGTGCGCTCAAATACACGCTCCAGCGCCTGCAGCTaGCTGCTGTTGAATGTGGTTCGATTCCGGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: CVRSNTRSSACS*LLLNVVRFRRC Trigger: GCAGCGCCGGAATCGAACCACATTCAACAGCAGCCAGCTGCAGGCGCTGGAGCGTGTATTTGAGCGCACACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS TCA 72 bp | GCTGTTGGCCATGTTGACTCCAGGAGTTGCAGGACTTaGACCTCCGGGGCTATAGGGAGGCACGGAGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: AVGHVDSRSCRT*TSGAIGRHGAV Trigger: TACAGCTCCGTGCCTCCCTATAGCCCCGGAGGTTCAAGTCCTGCAACTCCTGGAGTCAACATGGCCAACAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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| CDS CAA 72 bp | TTCTGGAACCAGACTTGGACACGTGCCTCACTGAGGTaGACACGGCGAGCTAGCTCTTCACGCACAAAGGCG | + |
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Preference number: 6 (lower is better) Translates to: FWNQTWTRASLR*TRRASSSRTKA Trigger: CGCCTTTGTGCGTGAAGAGCTAGCTCGCCGTGTCAACCTCAGTGAGGCACGTGTCCAAGTCTGGTTCCAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041659.7 ENSMUST00000113592.9 |
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