Pregenerated sensors for PRRT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045114Ensembl transcript IDs: ENSMUST00000159916.5, ENSMUST00000161931.2, ENSMUST00000201686.2, ENSMUST00000202045.2
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCCCCTGGATGTTCAGAATAAGGACTCTCAGAAGGTCCCCCAGGTaGGGACTCACTTGCCAGCTTTGGGACCCAATAGGCACCTTAGGG | + |
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Preference number: 1 (lower is better) Translates to: LPWMFRIRTLRRSPR*GLTCQLWDPIGTLG Trigger: CCCTAAGGTGCCTATTGGGTCCCAAAGCTGGCAAGTGAGTCCTCACCTGGGGGACCTTCTGAGAGTCCTTATTCTGAACATCCAGGGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR GCA 90 bp | CCCAAACGGGCAGATCAATTCAGGCTGACTCTTCAGGCGCAGCTATaGCCCTTCCTCCCCTGGATGTTCAGAATAAGGACTCTCAGAAGG | + |
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Preference number: 1 (lower is better) Translates to: PKRADQFRLTLQAQL*PFLPWMFRIRTLRR Trigger: CCTTCTGAGAGTCCTTATTCTGAACATCCAGGGGAGGAAGGGGCATAGCTGCGCCTGAAGAGTCAGCCTGAATTGATCTGCCCGTTTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR CCA 90 bp | AGGAAGGGGAGAACGGGATGGGTTAGATACCAAGACAATGAACGTTaGGAGGCCAGGGATAAGGTTCAGAGGATTCCAGAGGCAGGAAGA | + |
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Preference number: 1 (lower is better) Translates to: RKGRTGWVRYQDNER*EARDKVQRIPEAGR Trigger: TCTTCCTGCCTCTGGAATCCTCTGAACCTTATCCCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCGTTCTCCCCTTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR GCA 90 bp | CTCATCCTCTTAGAGAATAATTACAGAGCTCCCCCACCCTTCCCTTaGTCCCTGCAGCTGGGAACTTTGGTCCTGTTTTTGTTTGTTTGT | + |
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Preference number: 1 (lower is better) Translates to: LILLENNYRAPPPFP*SLQLGTLVLFLFVC Trigger: ACAAACAAACAAAAACAGGACCAAAGTTCCCAGCTGCAGGGAGCAAGGGAAGGGTGGGGGAGCTCTGTAATTATTCTCTAAGAGGATGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR-3UTR CCA 90 bp | CATCGCAGCTGGCTCTCTGCCTCCTCAGAGGGCTGTCGCGTGCAACAAACCTCCCCGCTCAGGCTCCCTTaGTCCCTAGAGATGGGGGCC | + |
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Preference number: 2 (lower is better) Translates to: HRSWLSASSEGCRVQQTSPLRLP*SLEMGA Trigger: GGCCCCCATCTCTAGGGACCAAGGGAGCCTGAGCGG...GGAGGTTTGTTGCACGCGACAGCCCTCTGAGGAGGCAGAGAGCCAGCTGCGATG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR CAA 90 bp | GGATGCAGGGGGAAAGAAGCTGTAAACAAGGCCGCTCAGGCTCCCTaGGTCCCTAGAGATGGGGGCCAGGGCCATGGACTGGGATTCTCC | + |
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Preference number: 2 (lower is better) Translates to: GCRGKEAVNKAAQAP*VPRDGGQGHGLGFS Trigger: GGAGAATCCCAGTCCATGGCCCTGGCCCCCATCTCTAGGGACCAAGGGAGCCTGAGCGGCCTTGTTTACAGCTTCTTTCCCCCTGCATCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR CCA 90 bp | AGGATGCAGGGGGAAAGAAGCTGTAAACAAGGCCGCTCAGGCTCCCTTGGTCCCTGGGGGCCAGGGCCATaGACTGGGATTCTCCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: RMQGERSCKQGRSGSLGPWGPGP*TGILPG Trigger: TCCTGGGAGAATCCCAGTCCATGGCCCTGGCCCCCA...GGGACCAAGGGAGCCTGAGCGGCCTTGTTTACAGCTTCTTTCCCCCTGCATCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR CCA 90 bp | TCCAGAAGTGCAGAGAGGTTTTCAGAGTGCAGGGTTAGGGAGGTCAAGAGGCAGGCCAGGGCCATGGACTaGGATTCTCCCAGGACAGGG | + |
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Preference number: 2 (lower is better) Translates to: SRSAERFSECRVREVKRQARAMD*DSPRTG Trigger: CCCTGTCCTGGGAGAATCCCAGTCCATGGCCCTGGC...CTGCCTCTTGACCTCCCTAACCCTGCACTCTGAAAACCTCTCTGCACTTCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGGGAGAACGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGTGGGGGCCAGGGCCATaGACTGGGATTCTCCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: KGRTGWVRYQDNERWEARWGPGP*TGILPG Trigger: TCCTGGGAGAATCCCAGTCCATGGCCCTGGCCCCCA...CCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCGTTCTCCCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGGGAGAACGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGAGGAGCCTGGCAGGATaGAGGGGGAAAGAAGCTGTA | + |
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Preference number: 2 (lower is better) Translates to: KGRTGWVRYQDNERWEARRSLAG*RGKEAV Trigger: TACAGCTTCTTTCCCCCTGCATCCTGCCAGGCTCCT...CCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCGTTCTCCCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR GCA 90 bp | CAGGTGAGGACTCACTTGCCAGCTTTGGGACCCAATAGGCACCTTAGGGGTAGGGAGAGGTTTTCAGAGTaGAGGGTTAGGGAGGTCAAG | + |
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Preference number: 2 (lower is better) Translates to: QVRTHLPALGPNRHLRGRERFSE*RVREVK Trigger: CTTGACCTCCCTAACCCTGCACTCTGAAAACCTCTC...CCTACCCCTAAGGTGCCTATTGGGTCCCAAAGCTGGCAAGTGAGTCCTCACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR-3UTR CCA 90 bp | TTCAGGAAGGCTTCCAGAAGTGCAGAGAGGTTTTCAGAGTGCAGGGTTAGGGAGCTCCCAGGACAGGGATaGACCCAAGACAGCTCCCAA | + |
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Preference number: 2 (lower is better) Translates to: FRKASRSAERFSECRVRELPGQG*TQDSSQ Trigger: TTGGGAGCTGTCTTGGGTCCATCCCTGTCCTGGGAG...CTCCCTAACCCTGCACTCTGAAAACCTCTCTGCACTTCTGGAAGCCTTCCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR GCA 90 bp | CGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGGATAAGGTTCAGGAGCCTGGCAGGATaGAGGGGGAAAGAAGCTGTA | + |
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Preference number: 2 (lower is better) Translates to: RDGLDTKTMNVGRPGIRFRSLAG*RGKEAV Trigger: TACAGCTTCTTTCCCCCTGCATCCTGCCAGGCTCCT...GAACCTTATCCCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR CCA 90 bp | AATTTAGATGTTCAGGAAGGCTTCCAGAAGTGCAGAGAGGTTTTCAGAGTGCAGCCGCTCAGGCTCCCTTaGTCCCTAGAGATGGGGGCC | + |
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Preference number: 2 (lower is better) Translates to: NLDVQEGFQKCREVFRVQPLRLP*SLEMGA Trigger: GGCCCCCATCTCTAGGGACCAAGGGAGCCTGAGCGG...CTGCACTCTGAAAACCTCTCTGCACTTCTGGAAGCCTTCCTGAACATCTAAATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR GCA 90 bp | CCCCTGGATGTTCAGAATAAGGACTCTCAGAAGGTCCCCCAGGTGAGGACTCACGGAGAGATGCAGAGGTaGAGAGTACAATTTAGATGT | + |
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Preference number: 2 (lower is better) Translates to: PLDVQNKDSQKVPQVRTHGEMQR*RVQFRC Trigger: ACATCTAAATTGTACTCTGCACCTCTGCATCTCTCC...GTGAGTCCTCACCTGGGGGACCTTCTGAGAGTCCTTATTCTGAACATCCAGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR-3UTR CCA 90 bp | CAATTTAGATGTTCAGGAAGGCTTCCAGAAGTGCAGAGAGGTTTTCAGAGTGCACTCCCAGGACAGGGATaGACCCAAGACAGCTCCCAA | + |
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Preference number: 2 (lower is better) Translates to: QFRCSGRLPEVQRGFQSALPGQG*TQDSSQ Trigger: TTGGGAGCTGTCTTGGGTCCATCCCTGTCCTGGGAG...TGCACTCTGAAAACCTCTCTGCACTTCTGGAAGCCTTCCTGAACATCTAAATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGCTCCCTGCAGCTGGGAACTTTGGTCCTGTTTTTGTTTGTTTGTTTTGTTTAGAAGGTCCCCCAGGTaGGGACTCACTTGCCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: LAPCSWELWSCFCLFVLFRRSPR*GLTCQL Trigger: AAGCTGGCAAGTGAGTCCTCACCTGGGGGACCTTCT...AAACAAAACAAACAAACAAAAACAGGACCAAAGTTCCCAGCTGCAGGGAGCAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR-3UTR GCA 90 bp | AGAACGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGGATAAGGAAGGCTTCCAGAAGTaGAGAGAGGTTTTCAGAGTG | + |
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Preference number: 2 (lower is better) Translates to: RTGWVRYQDNERWEARDKEGFQK*REVFRV Trigger: CACTCTGAAAACCTCTCTGCACTTCTGGAAGCCTTC...CTTATCCCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR CAA 90 bp | AGAGGTTTTCAGAGTGCAGGGTTAGGGAGGTCAAGAGGCAGGAGTGGGGTGGGGGCCGCTCAGGCTCCCTaGGTCCCTAGAGATGGGGGC | + |
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Preference number: 3 (lower is better) Translates to: RGFQSAGLGRSRGRSGVGAAQAP*VPRDGG Trigger: GCCCCCATCTCTAGGGACCAAGGGAGCCTGAGCGGC...CCCCACCCCACTCCTGCCTCTTGACCTCCCTAACCCTGCACTCTGAAAACCTCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGACTCTTCAGGCGCAGCTATGCCCCTTCCTCCCCTGGATGTTCAGAATAAGGCCGCTCAGGCTCCCTaGGTCCCTAGAGATGGGGGC | + |
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Preference number: 3 (lower is better) Translates to: ADSSGAAMPLPPLDVQNKAAQAP*VPRDGG Trigger: GCCCCCATCTCTAGGGACCAAGGGAGCCTGAGCGGC...CTTATTCTGAACATCCAGGGGAGGAAGGGGCATAGCTGCGCCTGAAGAGTCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR TCA 72 bp | ATGTTCAGAATAAGGACTCTCAGAAGGTCCCCCAGGTaGGGACTCACTTGCCAGCTTTGGGACCCAATAGGC | + |
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Preference number: 3 (lower is better) Translates to: MFRIRTLRRSPR*GLTCQLWDPIG Trigger: GCCTATTGGGTCCCAAAGCTGGCAAGTGAGTCCTCACCTGGGGGACCTTCTGAGAGTCCTTATTCTGAACAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR GCA 72 bp | GCAGATCAATTCAGGCTGACTCTTCAGGCGCAGCTATaGCCCTTCCTCCCCTGGATGTTCAGAATAAGGACT | + |
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Preference number: 3 (lower is better) Translates to: ADQFRLTLQAQL*PFLPWMFRIRT Trigger: AGTCCTTATTCTGAACATCCAGGGGAGGAAGGGGCATAGCTGCGCCTGAAGAGTCAGCCTGAATTGATCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR GCA 72 bp | CCAAGACAGCTCCCAACAGGAAGAAAAGTCTTGGAATaGAGGGCAGAGCCCCTCACTTATACACGCCTAAGT | + |
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Preference number: 3 (lower is better) Translates to: PRQLPTGRKVLE*RAEPLTYTRLS Trigger: ACTTAGGCGTGTATAAGTGAGGGGCTCTGCCCTGCATTCCAAGACTTTTCTTCCTGTTGGGAGCTGTCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161931.2 |
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| 3UTR GCA 72 bp | ATAATTACAGAGCTCCCCCACCCTTCCCTTGCTCCCTaGAGCTGGGAACTTTGGTCCTGTTTTTGTTTGTTT | + |
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Preference number: 3 (lower is better) Translates to: IITELPHPSLAP*SWELWSCFCLF Trigger: AAACAAACAAAAACAGGACCAAAGTTCCCAGCTGCAGGGAGCAAGGGAAGGGTGGGGGAGCTCTGTAATTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR-3UTR CAA 90 bp | GGAGAGATGCAGAGGTGCAGAGTACAATTTAGATGTTCAGGAAGGCTTCCAGAATTATACACGCCTAAGTaGATGACGCAGGAGGCGATG | + |
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Preference number: 3 (lower is better) Translates to: GEMQRCRVQFRCSGRLPELYTPK*MTQEAM Trigger: CATCGCCTCCTGCGTCATCAACTTAGGCGTGTATAA...TTCTGGAAGCCTTCCTGAACATCTAAATTGTACTCTGCACCTCTGCATCTCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161931.2 |
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| CDS-3UTR TCA 90 bp | GACCCAAGACAGCTCCCAACAGGAAGAAAAGTCTTGGAATGCAGGGCAGAGCCCATGCCTGGGCCCGGCTaGAGGGCCTCTGGCTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: DPRQLPTGRKVLECRAEPMPGPG*RASGWS Trigger: AGACCAGCCAGAGGCCCTTCAGCCGGGCCCAGGCAT...GGGCTCTGCCCTGCATTCCAAGACTTTTCTTCCTGTTGGGAGCTGTCTTGGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR GCA 90 bp | GACCCAAGACAGCTCCCAACAGGAAGAAAAGTCTTGGAATGCAGGGCAGAGCCCTGCTGGCTCTTGGCGTaGCTCGCTGGGGCTGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: DPRQLPTGRKVLECRAEPCWLLA*LAGAGA Trigger: AGCCCCAGCCCCAGCGAGGCACGCCAAGAGCCAGCA...GGGCTCTGCCCTGCATTCCAAGACTTTTCTTCCTGTTGGGAGCTGTCTTGGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | TCCAGAAGTGCAGAGAGGTTTTCAGAGTGCAGGGTTAGGGAGGTCAAGAGGCAGACTCGGCCCAGACGTTaGGCCCCATCCACGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: SRSAERFSECRVREVKRQTRPRR*APSTSP Trigger: GGGGGACGTGGATGGGGCTCAACGTCTGGGCCGAGT...CTGCCTCTTGACCTCCCTAACCCTGCACTCTGAAAACCTCTCTGCACTTCTGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| CDS-3UTR GCA 90 bp | GACCCAAGACAGCTCCCAACAGGAAGAAAAGTCTTGGAATGCAGGGCAGAGCCCCCCGAGGTTTCTGGGTaGCTTCGCCCCCTTCCACCC | + |
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Preference number: 4 (lower is better) Translates to: DPRQLPTGRKVLECRAEPPEVSG*LRPLPP Trigger: GGGTGGAAGGGGGCGAAGGCACCCAGAAACCTCGGG...GGGCTCTGCCCTGCATTCCAAGACTTTTCTTCCTGTTGGGAGCTGTCTTGGGTC 60% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CCA 90 bp | CCCGCCAACTCTGAAATGCATCGCAGCTGGCTCTCTGCCTCCTCAGAGGGCTGTCTCTGCCTGAAGGGGTaGTTTAGGAGGAGGCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: PANSEMHRSWLSASSEGCLCLKG*FRRRLG Trigger: TCCCAGCCTCCTCCTAAACCACCCCTTCAGGCAGAG...ACAGCCCTCTGAGGAGGCAGAGAGCCAGCTGCGATGCATTTCAGAGTTGGCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | AGGACAGGGATGGACCCAAGACAGCTCCCAACAGGAAGAAAAGTCTTGGAATGCCCACAGGGGCTGCAGTaGTGCCTGGGCCCGGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: RTGMDPRQLPTGRKVLECPQGLQ*CLGPAE Trigger: TTCAGCCGGGCCCAGGCATCACTGCAGCCCCTGTGG...GCATTCCAAGACTTTTCTTCCTGTTGGGAGCTGTCTTGGGTCCATCCCTGTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | TCGCAGCTGGCTCTCTGCCTCCTCAGAGGGCTGTCGCGTGCAACAAACCTCCCTCTTCTGGGTTTAAACTaGGGTCTGTGGCCTGGACTG | + |
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Preference number: 4 (lower is better) Translates to: SQLALCLLRGLSRATNLPLLGLN*GLWPGL Trigger: CAGTCCAGGCCACAGACCTCAGTTTAAACCCAGAAG...AGGGAGGTTTGTTGCACGCGACAGCCCTCTGAGGAGGCAGAGAGCCAGCTGCGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | CCCACCCTTCCCTTGCTCCCTGCAGCTGGGAACTTTGGTCCTGTTTTTGTTTGTTCCCCGTCACCAGCCTaGAGGGGAACCACTGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: PTLPLLPAAGNFGPVFVCSPSPA*RGTTAP Trigger: CGGAGCAGTGGTTCCCCTTCAGGCTGGTGACGGGGA...ACAAACAAAAACAGGACCAAAGTTCCCAGCTGCAGGGAGCAAGGGAAGGGTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | AGAGGTTTTCAGAGTGCAGGGTTAGGGAGGTCAAGAGGCAGGAGTGGGGTGGGGCGAAGGCCACAATGTTaGCAGGCCACATGGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RGFQSAGLGRSRGRSGVGRRPQC*QATWGR Trigger: TCTGCCCCATGTGGCCTGTCAACATTGTGGCCTTCG...CCCCACCCCACTCCTGCCTCTTGACCTCCCTAACCCTGCACTCTGAAAACCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| CDS-3UTR GCA 90 bp | AGAGGTTTTCAGAGTGCAGGGTTAGGGAGGTCAAGAGGCAGGAGTGGGGTGGGGCTCTGTGGTTTCTGGTaGCAGCTCTGCCTTAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: RGFQSAGLGRSRGRSGVGLCGFW*QLCLRP Trigger: GGGCCTAAGGCAGAGCTGGCACCAGAAACCACAGAG...CCCCACCCCACTCCTGCCTCTTGACCTCCCTAACCCTGCACTCTGAAAACCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | CAGGTGAGGACTCACTTGCCAGCTTTGGGACCCAATAGGCACCTTAGGGGTAGGCGAAGGCCACAATGTTaGCAGGCCACATGGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: QVRTHLPALGPNRHLRGRRRPQC*QATWGR Trigger: TCTGCCCCATGTGGCCTGTCAACATTGTGGCCTTCG...CCTACCCCTAAGGTGCCTATTGGGTCCCAAAGCTGGCAAGTGAGTCCTCACCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CCA 90 bp | TGCAGGGGGAAAGAAGCTGTAAACAAGGCCGCTCAGGCTCCCTTGGTCCCTAGAGGCCTCTGGCTGGTCTaGGATCTCTGCTACAACCTG | + |
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Preference number: 4 (lower is better) Translates to: CRGKEAVNKAAQAPLVPRGLWLV*DLCYNL Trigger: CAGGTTGTAGCAGAGATCCCAGACCAGCCAGAGGCC...TCTAGGGACCAAGGGAGCCTGAGCGGCCTTGTTTACAGCTTCTTTCCCCCTGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR GCA 90 bp | AAGGGGAGAACGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGGGAGGGGCTGTAGACTaGGGCTCAGACCCTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: KGRTGWVRYQDNERWEARGGAVD*GSDPSS Trigger: AGAGGAAGGGTCTGAGCCGCAGTCTACAGCCCCTCC...CCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCGTTCTCCCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR GCA 90 bp | AAGGGGAGAACGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGTCCACGTCCCCCTGTTaGAGGCTGTTCCGGGACATG | + |
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Preference number: 4 (lower is better) Translates to: KGRTGWVRYQDNERWEARSTSPC*RLFRDM Trigger: CATGTCCCGGAACAGCCTGCAACAGGGGGACGTGGA...CCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCGTTCTCCCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| CDS-3UTR CCA 90 bp | TCGCAGCTGGCTCTCTGCCTCCTCAGAGGGCTGTCGCGTGCAACAAACCTCCCTCTTCTTCAGAATGCCTaGGACCTTCTGTCTGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: SQLALCLLRGLSRATNLPLLQNA*DLLSGF Trigger: AAACCCAGACAGAAGGTCCCAGGCATTCTGAAGAAG...AGGGAGGTTTGTTGCACGCGACAGCCCTCTGAGGAGGCAGAGAGCCAGCTGCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CCA 90 bp | CAGGTGAGGACTCACTTGCCAGCTTTGGGACCCAATAGGCACCTTAGGGGTAGGGGCCTGGACTGTTTCTaGGGTTTCAACTGGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: QVRTHLPALGPNRHLRGRGLDCF*GFNWGL Trigger: GAGACCCCAGTTGAAACCCCAGAAACAGTCCAGGCC...CCTACCCCTAAGGTGCCTATTGGGTCCCAAAGCTGGCAAGTGAGTCCTCACCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| 3UTR CAA 72 bp | AAGGACTCTCAGAAGGTCCCCCAGGTGAGGACTCACTaGCCAGCTTTGGGACCCAATAGGCACCTTAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: KDSQKVPQVRTH*PALGPNRHLRG Trigger: ACCCCTAAGGTGCCTATTGGGTCCCAAAGCTGGCAAGTGAGTCCTCACCTGGGGGACCTTCTGAGAGTCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | TTCTCCCAGGACAGGGATGGACCCAAGACAGCTCCCAACAGGAAGAAAAGTCTTAGCTGGGAGCTGGGATaGCGGCTTAGGCTACCTCGA | + |
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Preference number: 4 (lower is better) Translates to: FSQDRDGPKTAPNRKKSLSWELG*RLRLPR Trigger: TCGAGGTAGCCTAAGCCGTCATCCCAGCTCCCAGCT...AAGACTTTTCTTCCTGTTGGGAGCTGTCTTGGGTCCATCCCTGTCCTGGGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR GCA 90 bp | TTCAGGAAGGCTTCCAGAAGTGCAGAGAGGTTTTCAGAGTGCAGGGTTAGGGAGCGAGGAGATCCTGGATaGCCACCGTGTGCCCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: FRKASRSAERFSECRVRERGDPG*PPCALP Trigger: AGGAAGGGCACACGGTGGGCATCCAGGATCTCCTCG...CTCCCTAACCCTGCACTCTGAAAACCTCTCTGCACTTCTGGAAGCCTTCCTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR GCA 90 bp | CGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGGATAAGGTTCTCCACGTCCCCCTGTTaGAGGCTGTTCCGGGACATG | + |
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Preference number: 4 (lower is better) Translates to: RDGLDTKTMNVGRPGIRFSTSPC*RLFRDM Trigger: CATGTCCCGGAACAGCCTGCAACAGGGGGACGTGGA...GAACCTTATCCCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| CDS-3UTR CCA 90 bp | AGGATGCAGGGGGAAAGAAGCTGTAAACAAGGCCGCTCAGGCTCCCTTGGTCCCTTCTGGGGTTTCAACTaGGGTCTCTGTGGTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: RMQGERSCKQGRSGSLGPFWGFN*GLCGFW Trigger: CCAGAAACCACAGAGACCCCAGTTGAAACCCCAGAA...GGGACCAAGGGAGCCTGAGCGGCCTTGTTTACAGCTTCTTTCCCCCTGCATCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CCA 90 bp | TTCTCCCAGGACAGGGATGGACCCAAGACAGCTCCCAACAGGAAGAAAAGTCTTCTGCCAGCTGGGAGCTaGGATGACGGCTTAGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: FSQDRDGPKTAPNRKKSLLPAGS*DDGLGY Trigger: GTAGCCTAAGCCGTCATCCCAGCTCCCAGCTGGCAG...AAGACTTTTCTTCCTGTTGGGAGCTGTCTTGGGTCCATCCCTGTCCTGGGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | CAATTTAGATGTTCAGGAAGGCTTCCAGAAGTGCAGAGAGGTTTTCAGAGTGCAACTCGGCCCAGACGTTaGGCCCCATCCACGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: QFRCSGRLPEVQRGFQSATRPRR*APSTSP Trigger: GGGGGACGTGGATGGGGCTCAACGTCTGGGCCGAGT...TGCACTCTGAAAACCTCTCTGCACTTCTGGAAGCCTTCCTGAACATCTAAATTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| CDS-3UTR CCA 90 bp | CAGGTGAGGACTCACTTGCCAGCTTTGGGACCCAATAGGCACCTTAGGGGTAGGCTTCTGTCTGGGTTTTaGAACTGTCTTCCACCCCCT | + |
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Preference number: 4 (lower is better) Translates to: QVRTHLPALGPNRHLRGRLLSGF*NCLPPP Trigger: AGGGGGTGGAAGACAGTTCCAAAACCCAGACAGAAG...CCTACCCCTAAGGTGCCTATTGGGTCCCAAAGCTGGCAAGTGAGTCCTCACCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CCA 90 bp | GGGAGAACGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGGATCTGAGGTCTGTGGCCTaGACTGTTTCTGGGGTTTCA | + |
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Preference number: 4 (lower is better) Translates to: GRTGWVRYQDNERWEARDLRSVA*TVSGVS Trigger: TGAAACCCCAGAAACAGTCCAGGCCACAGACCTCAG...ATCCCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCGTTCTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | GGGAGAACGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGGATGACTGGGTGTTTATCTaGAAAGCAGGCTCCGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: GRTGWVRYQDNERWEARDDWVFI*KAGSEV Trigger: AACCTCGGAGCCTGCTTTTCAGATAAACACCCAGTC...ATCCCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCGTTCTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR GCA 90 bp | CGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGGATAAGGTTCCAACCAGCGCCACGATaGTTAAGAGCTTGGCTACTC | + |
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Preference number: 4 (lower is better) Translates to: RDGLDTKTMNVGRPGIRFQPAPR*LRAWLL Trigger: GAGTAGCCAAGCTCTTAAGCATCGTGGCGCTGGTTG...GAACCTTATCCCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CCA 90 bp | CGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGGATAAGGTTCCGATGCTTAAGAGCTTaGCTACTCGGCCCAGACGTT | + |
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Preference number: 4 (lower is better) Translates to: RDGLDTKTMNVGRPGIRFRCLRA*LLGPDV Trigger: AACGTCTGGGCCGAGTAGCCAAGCTCTTAAGCATCG...GAACCTTATCCCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CCA 90 bp | GGAGAGATGCAGAGGTGCAGAGTACAATTTAGATGTTCAGGAAGGCTTCCAGAAGGCTGGGGCTGGCCTTaGAGCCTTCTTCTGGGTTTA | + |
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Preference number: 4 (lower is better) Translates to: GEMQRCRVQFRCSGRLPEGWGWP*SLLLGL Trigger: TAAACCCAGAAGAAGGCTCCAAGGCCAGCCCCAGCC...TTCTGGAAGCCTTCCTGAACATCTAAATTGTACTCTGCACCTCTGCATCTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | CAATTTAGATGTTCAGGAAGGCTTCCAGAAGTGCAGAGAGGTTTTCAGAGTGCAGGCTGGGAAGTTGGCTaGGGGTCTGACTGGGTGTTT | + |
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Preference number: 4 (lower is better) Translates to: QFRCSGRLPEVQRGFQSAGWEVG*GSDWVF Trigger: AAACACCCAGTCAGACCCTCAGCCAACTTCCCAGCC...TGCACTCTGAAAACCTCTCTGCACTTCTGGAAGCCTTCCTGAACATCTAAATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR TCA 90 bp | TTCAGGAAGGCTTCCAGAAGTGCAGAGAGGTTTTCAGAGTGCAGGGTTAGGGAGACAGGATGGCAAGGATaGTATAGTCCCGAGGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: FRKASRSAERFSECRVRETGWQG*YSPEVS Trigger: AGAAACCTCGGGACTATATCATCCTTGCCATCCTGT...CTCCCTAACCCTGCACTCTGAAAACCTCTCTGCACTTCTGGAAGCCTTCCTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| CDS-3UTR CAA 90 bp | TCGCAGCTGGCTCTCTGCCTCCTCAGAGGGCTGTCGCGTGCAACAAACCTCCCTTTTGGATGCTGGCTCTaGGCGTGCCTCGCTGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: SQLALCLLRGLSRATNLPFGCWL*ACLAGA Trigger: AGCCCCAGCGAGGCACGCCAAGAGCCAGCATCCAAA...AGGGAGGTTTGTTGCACGCGACAGCCCTCTGAGGAGGCAGAGAGCCAGCTGCGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS TCA 90 bp | ACCAGCGCCACGATGCTTAAGAGCTTGGCTACTCGGCCCAGACGTTaGGCCCCATCCACGTCCCCCTGTTGCAGGCTGTTCCGGGACATG | + |
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Preference number: 5 (lower is better) Translates to: TSATMLKSLATRPRR*APSTSPCCRLFRDM Trigger: CATGTCCCGGAACAGCCTGCAACAGGGGGACGTGGATGGGGCTCAACGTCTGGGCCGAGTAGCCAAGCTCTTAAGCATCGTGGCGCTGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000202045.2 |
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| CDS-3UTR CAA 90 bp | CCCAGGACAGGGATGGACCCAAGACAGCTCCCAACAGGAAGAAAAGTCTTGGAATACTCGGCCCAGACGTaGAGCCCCATCCACGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: PRTGMDPRQLPTGRKVLEYSAQT*SPIHVP Trigger: GGGGACGTGGATGGGGCTCAACGTCTGGGCCGAGTA...TTCCAAGACTTTTCTTCCTGTTGGGAGCTGTCTTGGGTCCATCCCTGTCCTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| CDS-3UTR CAA 90 bp | GACAGCTCCCAACAGGAAGAAAAGTCTTGGAATGCAGGGCAGAGCCCCTCACTTTACTCGGCCCAGACGTaGAGCCCCATCCACGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: DSSQQEEKSWNAGQSPSLYSAQT*SPIHVP Trigger: GGGGACGTGGATGGGGCTCAACGTCTGGGCCGAGTA...AAGTGAGGGGCTCTGCCCTGCATTCCAAGACTTTTCTTCCTGTTGGGAGCTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161931.2 |
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| CDS GCA 90 bp | GGTTGGCTCAGGAGGGGCTGTAGACTGCGGCTCAGACCCTTCCTCTaGTGCAGTCTCTCTGTTCACATCTGGTTTGGATGCTGGCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: GWLRRGCRLRLRPFL*CSLSVHIWFGCWLL Trigger: CAAGAGCCAGCATCCAAACCAGATGTGAACAGAGAGACTGCAGCAGAGGAAGGGTCTGAGCCGCAGTCTACAGCCCCTCCTGAGCCAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CAA 90 bp | CCCAGGACAGGGATGGACCCAAGACAGCTCCCAACAGGAAGAAAAGTCTTGGAAGGGCTGGGGCTGGCCTaGGAGCCTTCTTCTGGGTTT | + |
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Preference number: 5 (lower is better) Translates to: PRTGMDPRQLPTGRKVLEGLGLA*EPSSGF Trigger: AAACCCAGAAGAAGGCTCCAAGGCCAGCCCCAGCCC...TTCCAAGACTTTTCTTCCTGTTGGGAGCTGTCTTGGGTCCATCCCTGTCCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CAA 90 bp | AGGATGCAGGGGGAAAGAAGCTGTAAACAAGGCCGCTCAGGCTCCCTTGGTCCCCTGTTCACATCTGGTTaGGATGCTGGCTCTTGGCGT | + |
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Preference number: 5 (lower is better) Translates to: RMQGERSCKQGRSGSLGPLFTSG*DAGSWR Trigger: ACGCCAAGAGCCAGCATCCAAACCAGATGTGAACAG...GGGACCAAGGGAGCCTGAGCGGCCTTGTTTACAGCTTCTTTCCCCCTGCATCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CAA 90 bp | ACGGGATGGGTTAGATACCAAGACAATGAACGTTGGGAGGCCAGGGATAAGGTTATCCACGTCCCCCTGTaGCAGGCTGTTCCGGGACAT | + |
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Preference number: 5 (lower is better) Translates to: TGWVRYQDNERWEARDKVIHVPL*QAVPGH Trigger: ATGTCCCGGAACAGCCTGCAACAGGGGGACGTGGAT...AACCTTATCCCTGGCCTCCCAACGTTCATTGTCTTGGTATCTAACCCATCCCGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 |
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| CDS CCA 90 bp | CTGGCCTTGGAGCCTTCTTCTGGGTTTAAACTGAGGTCTGTGGCCTaGACTGTTTCTGGGGTTTCAACTGGGGTCTCTGTGGTTTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: LALEPSSGFKLRSVA*TVSGVSTGVSVVSG Trigger: ACCAGAAACCACAGAGACCCCAGTTGAAACCCCAGAAACAGTCCAGGCCACAGACCTCAGTTTAAACCCAGAAGAAGGCTCCAAGGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CAA 90 bp | CAGGACAGGGATGGACCCAAGACAGCTCCCAACAGGAAGAAAAGTCTTGGAATGACGATGCTTAAGAGCTaGGCTACTCGGCCCAGACGT | + |
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Preference number: 5 (lower is better) Translates to: QDRDGPKTAPNRKKSLGMTMLKS*ATRPRR Trigger: ACGTCTGGGCCGAGTAGCCAAGCTCTTAAGCATCGT...CATTCCAAGACTTTTCTTCCTGTTGGGAGCTGTCTTGGGTCCATCCCTGTCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CAA 90 bp | TCCAGAAGTGCAGAGAGGTTTTCAGAGTGCAGGGTTAGGGAGGTCAAGAGGCAGTTATACACGCCTAAGTaGATGACGCAGGAGGCGATG | + |
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Preference number: 5 (lower is better) Translates to: SRSAERFSECRVREVKRQLYTPK*MTQEAM Trigger: CATCGCCTCCTGCGTCATCAACTTAGGCGTGTATAA...CTGCCTCTTGACCTCCCTAACCCTGCACTCTGAAAACCTCTCTGCACTTCTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS-3UTR CAA 90 bp | CAATTTAGATGTTCAGGAAGGCTTCCAGAAGTGCAGAGAGGTTTTCAGAGTGCACCTTCTGTCTGGGTTTaGGAACTGTCTTCCACCCCC | + |
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Preference number: 5 (lower is better) Translates to: QFRCSGRLPEVQRGFQSAPSVWV*ELSSTP Trigger: GGGGGTGGAAGACAGTTCCAAAACCCAGACAGAAGG...TGCACTCTGAAAACCTCTCTGCACTTCTGGAAGCCTTCCTGAACATCTAAATTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS CCA 72 bp | GGCTGCAGTGATGCCTGGGCCCGGCTGAAGGGCCTCTaGCTGGTCTGGGATCTCTGCTACAACCTGGACAGG | + |
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Preference number: 6 (lower is better) Translates to: GCSDAWARLKGL*LVWDLCYNLDR Trigger: CCTGTCCAGGTTGTAGCAGAGATCCCAGACCAGCCAGAGGCCCTTCAGCCGGGCCCAGGCATCACTGCAGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS GCA 72 bp | GCAGGCTCCGAGGTTGGCTCAGGAGGGGCTGTAGACTaGGGCTCAGACCCTTCCTCTGCTGCAGTCTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: AGSEVGSGGAVD*GSDPSSAAVSL Trigger: CAGAGAGACTGCAGCAGAGGAAGGGTCTGAGCCGCAGTCTACAGCCCCTCCTGAGCCAACCTCGGAGCCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS CAA 72 bp | TCGGCCCAGACGTTGAGCCCCATCCACGTCCCCCTGTaGCAGGCTGTTCCGGGACATGACGGCATAAGCGAA | + |
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Preference number: 6 (lower is better) Translates to: SAQTLSPIHVPL*QAVPGHDGISE Trigger: TTCGCTTATGCCGTCATGTCCCGGAACAGCCTGCAACAGGGGGACGTGGATGGGGCTCAACGTCTGGGCCGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000159916.5 ENSMUST00000161931.2 ENSMUST00000202045.2 |
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| CDS TCA 72 bp | GCCACATGGGGCAGAAGCAGGACAGGATGGCAAGGATaGTATAGTCCCGAGGTTTCTGGGTGCCTTCGCCCC | + |
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Preference number: 6 (lower is better) Translates to: ATWGRSRTGWQG*YSPEVSGCLRP Trigger: GGGGCGAAGGCACCCAGAAACCTCGGGACTATATCATCCTTGCCATCCTGTCCTGCTTCTGCCCCATGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS TCA 72 bp | ACGATGCTTAAGAGCTTGGCTACTCGGCCCAGACGTTaGGCCCCATCCACGTCCCCCTGTTGCAGGCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: TMLKSLATRPRR*APSTSPCCRLF Trigger: GAACAGCCTGCAACAGGGGGACGTGGATGGGGCTCAACGTCTGGGCCGAGTAGCCAAGCTCTTAAGCATCGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000202045.2 |
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| CDS CCA 72 bp | CTTCCTCTGCTGCAGTCTCTCTGTTCACATCTGGTTTaGATGCTGGCTCTTGGCGTGCCTCGCTGGGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LPLLQSLCSHLV*MLALGVPRWGW Trigger: CCAGCCCCAGCGAGGCACGCCAAGAGCCAGCATCCAAACCAGATGTGAACAGAGAGACTGCAGCAGAGGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS CCA 72 bp | AGGGCCTCTGGCTGGTCTGGGATCTCTGCTACAACCTaGACAGGACCTAGTCCTTCTTCAGAATGCCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: RASGWSGISATT*TGPSPSSECLG Trigger: TCCCAGGCATTCTGAAGAAGGACTAGGTCCTGTCCAGGTTGTAGCAGAGATCCCAGACCAGCCAGAGGCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS CCA 72 bp | GAGGTCTGTGGCCTGGACTGTTTCTGGGGTTTCAACTaGGGTCTCTGTGGTTTCTGGTGCCAGCTCTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: EVCGLDCFWGFN*GLCGFWCQLCL Trigger: AAGGCAGAGCTGGCACCAGAAACCACAGAGACCCCAGTTGAAACCCCAGAAACAGTCCAGGCCACAGACCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS TCA 72 bp | GCCACATGGGGCAGAAGCAGGACAGGATGGCAAGGATaGTATAGTCCCGAGGTTTCTGGGTGCCCTTCCTAT | + |
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Preference number: 6 (lower is better) Translates to: ATWGRSRTGWQG*YSPEVSGCPSY Trigger: ATAGGAAGGGCACCCAGAAACCTCGGGACTATATCATCCTTGCCATCCTGTCCTGCTTCTGCCCCATGTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161931.2 |
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| CDS TCA 72 bp | TGGTTTAGGAGGAGGCTGGGAAGTTGGCTGAGGGTCTaGCTGGGTGTTTATCTGAAAAGCAGGCTCCGAGGT | + |
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Preference number: 6 (lower is better) Translates to: WFRRRLGSWLRV*LGVYLKSRLRG Trigger: ACCTCGGAGCCTGCTTTTCAGATAAACACCCAGTCAGACCCTCAGCCAACTTCCCAGCCTCCTCCTAAACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159916.5 ENSMUST00000201686.2 |
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| CDS CCA 72 bp | GAGCCTTCTTCTGGGTTTAAACTGAGGTCTGTGGCCTaGACTGTTTCTGGGGTTTCAACTGGGGTCTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: EPSSGFKLRSVA*TVSGVSTGVSV Trigger: CACAGAGACCCCAGTTGAAACCCCAGAAACAGTCCAGGCCACAGACCTCAGTTTAAACCCAGAAGAAGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS CAA 72 bp | CCTTCTTCAGAATGCCTGGGACCTTCTGTCTGGGTTTaGGAACTGTCTTCCACCCCCTTCATCTCAGAGACC | + |
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Preference number: 6 (lower is better) Translates to: PSSECLGPSVWV*ELSSTPFISET Trigger: GGTCTCTGAGATGAAGGGGGTGGAAGACAGTTCCAAAACCCAGACAGAAGGTCCCAGGCATTCTGAAGAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS CCA 72 bp | CTTCTTCAGAATGCCTGGGACCTTCTGTCTGGGTTTTaGAACTGTCTTCCACCCCCTTCATCTCAGAGACCT | + |
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Preference number: 6 (lower is better) Translates to: LLQNAWDLLSGF*NCLPPPSSQRP Trigger: AGGTCTCTGAGATGAAGGGGGTGGAAGACAGTTCCAAAACCCAGACAGAAGGTCCCAGGCATTCTGAAGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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| CDS CCA 72 bp | CAACCTGGACAGGACCTAGTCCTTCTTCAGAATGCCTaGGACCTTCTGTCTGGGTTTTGGAACTGTCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: QPGQDLVLLQNA*DLLSGFWNCLP Trigger: TGGAAGACAGTTCCAAAACCCAGACAGAAGGTCCCAGGCATTCTGAAGAAGGACTAGGTCCTGTCCAGGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159916.5 |
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