Pregenerated sensors for PRRT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015476Ensembl transcript IDs: ENSMUST00000015620.7
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGAGCGTACTCTCTGGGCCAGAGGTTCCGTGGGGGCGGAGTTTATaGTGTCTGGACGTCCAGCGGCGCCTCAGGAGGCTGTGCAGGGCG | + |
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Preference number: 1 (lower is better) Translates to: LSVLSGPEVPWGRSL*CLDVQRRLRRLCRA Trigger: CGCCCTGCACAGCCTCCTGAGGCGCCGCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGAGTACGCTCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR CCA 90 bp | TACTCTCTGGGCCAGAGGTTCCGTGGGGGCGGAGTTTATGATGTCTaGACGTCCAGCGGCGCCTCAGGAGGCTGTGCAGGGCGCGCGTTG | + |
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Preference number: 1 (lower is better) Translates to: YSLGQRFRGGGVYDV*TSSGASGGCAGRAL Trigger: CAACGCGCGCCCTGCACAGCCTCCTGAGGCGCCGCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGAGTA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR CCA 90 bp | GTGGAGCTCATAGATGAGGCAGGGCTTCTGGGACCTGACTCCTACTaGGGAGAGGAGACGAGGAGAGCTCCTCCCCTGGCACTGCACTTT | + |
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Preference number: 1 (lower is better) Translates to: VELIDEAGLLGPDSY*GEETRRAPPLALHF Trigger: AAAGTGCAGTGCCAGGGGAGGAGCTCTCCTCGTCTCCTCTCCCCAGTAGGAGTCAGGTCCCAGAAGCCCTGCCTCATCTATGAGCTCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR-3UTR CCA 90 bp | GAAGTTCACACACGGCACACACAGATCAAAACAAGTCTAGGGCTGAGGGGAGGGACGCGCCTGGGAGGTTaGGGGGCACGGAGTGGGGCC | + |
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Preference number: 2 (lower is better) Translates to: EVHTRHTQIKTSLGLRGGTRLGG*GARSGA Trigger: GGCCCCACTCCGTGCCCCCCAACCTCCCAGGCGCGT...CCCTCCCCTCAGCCCTAGACTTGTTTTGATCTGTGTGTGCCGTGTGTGAACTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR CAA 90 bp | TGGCACTGCACTTTGATGGGGTGGGAAACTAGGGCGACTGGAGGATaGGGGTTTGGCGCGGATTCCAGTGCCGCTGAGGATGTGGGTGTT | + |
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Preference number: 2 (lower is better) Translates to: WHCTLMGWETRATGG*GFGADSSAAEDVGV Trigger: AACACCCACATCCTCAGCGGCACTGGAATCCGCGCCAAACCCCAATCCTCCAGTCGCCCTAGTTTCCCACCCCATCAAAGTGCAGTGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR-3UTR TCA 90 bp | CTCCCAAGGCTGAGTCCTTTTAGGGAGGTAGGGGGAATGAGTCCGTCTGTATGTGGTGGAGCTCATAGATaGGGCAGGGCTTCTGGGACC | + |
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Preference number: 2 (lower is better) Translates to: LPRLSPFREVGGMSPSVCGGAHR*GRASGT Trigger: GGTCCCAGAAGCCCTGCCTCATCTATGAGCTCCACC...ACATACAGACGGACTCATTCCCCCTACCTCCCTAAAAGGACTCAGCCTTGGGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR-3UTR CCA 90 bp | GAAGTTCACACACGGCACACACAGATCAAAACAAGTCTAGGGCTGAGGGGAGGGGGGCGACTGGAGGATTaGGGTTTGGCGCGGATTCCA | + |
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Preference number: 2 (lower is better) Translates to: EVHTRHTQIKTSLGLRGGGRLED*GLARIP Trigger: TGGAATCCGCGCCAAACCCCAATCCTCCAGTCGCCC...CCCTCCCCTCAGCCCTAGACTTGTTTTGATCTGTGTGTGCCGTGTGTGAACTTC 57% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR CCA 72 bp | CCAGCGGCGCCTCAGGAGGCTGTGCAGGGCGCGCGTTaGGTAGGCGGCAGAACTGCGCGACGCGCCTGGGAG | + |
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Preference number: 3 (lower is better) Translates to: PAAPQEAVQGAR*VGGRTARRAWE Trigger: CTCCCAGGCGCGTCGCGCAGTTCTGCCGCCTACCCAACGCGCGCCCTGCACAGCCTCCTGAGGCGCCGCTGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR CCA 72 bp | GGCCAGAGGTTCCGTGGGGGCGGAGTTTATGATGTCTaGACGTCCAGCGGCGCCTCAGGAGGCTGTGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: GQRFRGGGVYDV*TSSGASGGCAG Trigger: CCCTGCACAGCCTCCTGAGGCGCCGCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR TCA 72 bp | CTCTCTGGGCCAGAGGTTCCGTGGGGGCGGAGTTTATaGTGTCTGGACGTCCAGCGGCGCCTCAGGAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: LSGPEVPWGRSL*CLDVQRRLRRL Trigger: CAGCCTCCTGAGGCGCCGCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR CCA 72 bp | ATAGATGAGGCAGGGCTTCTGGGACCTGACTCCTACTaGGGAGAGGAGACGAGGAGAGCTCCTCCCCTGGCA | + |
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Preference number: 3 (lower is better) Translates to: IDEAGLLGPDSY*GEETRRAPPLA Trigger: TGCCAGGGGAGGAGCTCTCCTCGTCTCCTCTCCCCAGTAGGAGTCAGGTCCCAGAAGCCCTGCCTCATCTAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR TCA 72 bp | TATTTACATTGCAGGGACTTGGTTCTTTTTCCAGGGTaGGGGGTACTAAACCAGGAACTTCCCACATCTCAC | + |
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Preference number: 3 (lower is better) Translates to: YLHCRDLVLFPG*GVLNQELPTSH Trigger: GTGAGATGTGGGAAGTTCCTGGTTTAGTACCCCTCACCCTGGAAAAAGAACCAAGTCCCTGCAATGTAAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | GGACCTGACTCCTACTGGGGAGAGGAGACGAGGAGAGCTCCTCCCCTGGCACTGGCGGCGGGGGCAGAGTaGAGGTCACTCCAGGACCCC | + |
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Preference number: 4 (lower is better) Translates to: GPDSYWGEETRRAPPLALAAGAE*RSLQDP Trigger: GGGGTCCTGGAGTGACCTCCACTCTGCCCCCGCCGC...CAGTGCCAGGGGAGGAGCTCTCCTCGTCTCCTCTCCCCAGTAGGAGTCAGGTCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR GCA 90 bp | TCTCTGGGCCAGAGGTTCCGTGGGGGCGGAGTTTATGATGTCTGGACGTCCAGCCCCACCGCCCCCGCGTaGGTGGGAACCACGAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: SLGQRFRGGGVYDVWTSSPTAPA*VGTTKP Trigger: GGGCTTCGTGGTTCCCACGCACGCGGGGGCGGTGGG...GCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | CGAGGAGAGCTCCTCCCCTGGCACTGCACTTTGATGGGGTGGGAAACTAGGGCGTTTGTGGGGGCGGGATaGGGGGCTCGGCCGGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: RGELLPWHCTLMGWETRAFVGAG*GARPVA Trigger: AGCCACCGGCCGAGCCCCCCATCCCGCCCCCACAAA...CGCCCTAGTTTCCCACCCCATCAAAGTGCAGTGCCAGGGGAGGAGCTCTCCTCG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | GGGGTTCCTGAGGAACTGAGCGTACTCTCTGGGCCAGAGGTTCCGTGGGGGCGGCTAAGCGCGGGAGGGTaGCGGTGCCAGACTGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: GVPEELSVLSGPEVPWGRLSAGG*RCQTGG Trigger: ACCACCAGTCTGGCACCGCCACCCTCCCGCGCTTAG...CCGCCCCCACGGAACCTCTGGCCCAGAGAGTACGCTCAGTTCCTCAGGAACCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | TCTCTGGGCCAGAGGTTCCGTGGGGGCGGAGTTTATGATGTCTGGACGTCCAGCGACCGCGTTGAGCACTaGCCGCAGCAGAGGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SLGQRFRGGGVYDVWTSSDRVEH*PQQRPG Trigger: GCCTGGCCTCTGCTGCGGCCAGTGCTCAACGCGGTC...GCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | GCGGATTCCAGTGCCGCTGAGGATGTGGGTGTTAGAGGGGTTCCTGAGGAACTGCAACAGAGCCAATCCTaGGCCCTGGGGCGGCGGGGG | + |
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Preference number: 4 (lower is better) Translates to: ADSSAAEDVGVRGVPEELQQSQS*ALGRRG Trigger: CCCCCGCCGCCCCAGGGCCCAGGATTGGCTCTGTTG...CAGTTCCTCAGGAACCCCTCTAACACCCACATCCTCAGCGGCACTGGAATCCGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR TCA 90 bp | GGACCTGACTCCTACTGGGGAGAGGAGACGAGGAGAGCTCCTCCCCTGGCACTGCCACGGCCAGGGAGATaGAGGAGAAATTCCGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: GPDSYWGEETRRAPPLALPRPGR*RRNSGL Trigger: AAGCCCGGAATTTCTCCTTCATCTCCCTGGCCGTGG...CAGTGCCAGGGGAGGAGCTCTCCTCGTCTCCTCTCCCCAGTAGGAGTCAGGTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | CTGGGCCAGAGGTTCCGTGGGGGCGGAGTTTATGATGTCTGGACGTCCAGCGGCTGGTACAAAGCACCATaGCTGCGATGCCCACGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LGQRFRGGGVYDVWTSSGWYKAP*LRCPRP Trigger: TGGCCGTGGGCATCGCAGCCATGGTGCTTTGTACCA...GCCGCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR GCA 90 bp | TCTCTGGGCCAGAGGTTCCGTGGGGGCGGAGTTTATGATGTCTGGACGTCCAGCCAGGGACATAAGCAGTaGACGGCTGCAGCTGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: SLGQRFRGGGVYDVWTSSQGHKQ*TAAAAA Trigger: CGCTGCAGCTGCAGCCGTGCACTGCTTATGTCCCTG...GCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR GCA 90 bp | TCTCTGGGCCAGAGGTTCCGTGGGGGCGGAGTTTATGATGTCTGGACGTCCAGCACAAAGCACCATGGCTaGGATGCCCACGGCCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: SLGQRFRGGGVYDVWTSSTKHHG*DAHGQG Trigger: TCCCTGGCCGTGGGCATCGCAGCCATGGTGCTTTGT...GCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | TCTCTGGGCCAGAGGTTCCGTGGGGGCGGAGTTTATGATGTCTGGACGTCCAGCTGGTCAGCACAGCGATaGGCATGTAGTCGTGTGGCG | + |
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Preference number: 4 (lower is better) Translates to: SLGQRFRGGGVYDVWTSSWSAQR*ACSRVA Trigger: CGCCACACGACTACATGCCCATCGCTGTGCTGACCA...GCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR CAA 72 bp | AGGAGACGAGGAGAGCTCCTCCCCTGGCACTGCACTTaGATGGGGTGGGAAACTAGGGCGACTGGAGGATTG | + |
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Preference number: 4 (lower is better) Translates to: RRRGELLPWHCT*MGWETRATGGL Trigger: CAATCCTCCAGTCGCCCTAGTTTCCCACCCCATCAAAGTGCAGTGCCAGGGGAGGAGCTCTCCTCGTCTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | GCGGATTCCAGTGCCGCTGAGGATGTGGGTGTTAGAGGGGTTCCTGAGGAACTGGCCAGAAGCAGCAGATaGTGGTCAGCACAGCGATGG | + |
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Preference number: 4 (lower is better) Translates to: ADSSAAEDVGVRGVPEELARSSR*WSAQRW Trigger: CCATCGCTGTGCTGACCACCATCTGCTGCTTCTGGC...CAGTTCCTCAGGAACCCCTCTAACACCCACATCCTCAGCGGCACTGGAATCCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | GTTCTCCCAAGGCTGAGTCCTTTTAGGGAGGTAGGGGGAATGAGTCCGTCTGTACGGTGGTGGGGGAAGTaGACCCTCGAAGCGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: VLPRLSPFREVGGMSPSVRWWGK*TLEASL Trigger: GAGACTCGCTTCGAGGGTCCACTTCCCCCACCACCG...TACAGACGGACTCATTCCCCCTACCTCCCTAAAAGGACTCAGCCTTGGGAGAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | AAACCAGGAACTTCCCACATCTCACTCCAAAAGCAGCAAAACGGGAAGTTCTGTGGCGGCCGCAGGCGGTaGTGGGGGAAGTGGACCCTC | + |
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Preference number: 4 (lower is better) Translates to: KPGTSHISLQKQQNGKFCGGRRR*WGKWTL Trigger: GAGGGTCCACTTCCCCCACCACCGCCTGCGGCCGCC...ACAGAACTTCCCGTTTTGCTGCTTTTGGAGTGAGATGTGGGAAGTTCCTGGTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | CTCCCAAGGCTGAGTCCTTTTAGGGAGGTAGGGGGAATGAGTCCGTCTGTATGTGGGCATGTAGTCGTGTaGCGGACGCCTGGGCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: LPRLSPFREVGGMSPSVCGHVVV*RTPGLQ Trigger: TTGGAGCCCAGGCGTCCGCCACACGACTACATGCCC...ACATACAGACGGACTCATTCCCCCTACCTCCCTAAAAGGACTCAGCCTTGGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR CAA 72 bp | ACTTTGATGGGGTGGGAAACTAGGGCGACTGGAGGATaGGGGTTTGGCGCGGATTCCAGTGCCGCTGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: TLMGWETRATGG*GFGADSSAAED Trigger: ATCCTCAGCGGCACTGGAATCCGCGCCAAACCCCAATCCTCCAGTCGCCCTAGTTTCCCACCCCATCAAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR TCA 90 bp | GTTCTCCCAAGGCTGAGTCCTTTTAGGGAGGTAGGGGGAATGAGTCCGTCTGTAATTGTAGGGCGGCGGTaGAGTGTGGGGAACCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: VLPRLSPFREVGGMSPSVIVGRR*SVGNRV Trigger: GACTCGGTTCCCCACACTTCACCGCCGCCCTACAAT...TACAGACGGACTCATTCCCCCTACCTCCCTAAAAGGACTCAGCCTTGGGAGAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR CCA 90 bp | GTTCTCCCAAGGCTGAGTCCTTTTAGGGAGGTAGGGGGAATGAGTCCGTCTGTAAGAAGCAGCAGATGGTaGTCAGCACAGCGATGGGCA | + |
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Preference number: 4 (lower is better) Translates to: VLPRLSPFREVGGMSPSVRSSRW*SAQRWA Trigger: TGCCCATCGCTGTGCTGACCACCATCTGCTGCTTCT...TACAGACGGACTCATTCCCCCTACCTCCCTAAAAGGACTCAGCCTTGGGAGAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| 3UTR CAA 72 bp | AACCCTGGATTCTCTTCTGCCCCCACTGACCAGGGGTaGGCACAGGTAGAAAGGGTATTTACATTGCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: NPGFSSAPTDQG*AQVERVFTLQG Trigger: TCCCTGCAATGTAAATACCCTTTCTACCTGTGCCAACCCCTGGTCAGTGGGGGCAGAAGAGAATCCAGGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR TCA 90 bp | AAACCAGGAACTTCCCACATCTCACTCCAAAAGCAGCAAAACGGGAAGTTCTGTATTCCGGGCTTCGCGTaGAGCGATCTCGGCAGACAC | + |
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Preference number: 4 (lower is better) Translates to: KPGTSHISLQKQQNGKFCIPGFA*SDLGRH Trigger: GTGTCTGCCGAGATCGCTTCACGCGAAGCCCGGAAT...ACAGAACTTCCCGTTTTGCTGCTTTTGGAGTGAGATGTGGGAAGTTCCTGGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS-3UTR TCA 90 bp | AATGTTTTTAATACTGTCTCGTGGAAGTTCACACACGGCACACACAGATCAAAAGTGGTGGTGGTGATGTaGGGATGGGGCCGTTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: NVFNTVSWKFTHGTHRSKVVVVM*GWGRLW Trigger: CCACAAACGGCCCCATCCTCACATCACCACCACCAC...TTTTGATCTGTGTGTGCCGTGTGTGAACTTCCACGAGACAGTATTAAAAACATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS GCA 90 bp | CGCCTGCGTAGGGCGTGCCCACCGGATACACAGGGACATAAGCAGTaGACGGCTGCAGCTGCAGCGGGTAGCCCGGCGCCACGTAGCCCC | + |
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Preference number: 5 (lower is better) Translates to: RLRRACPPDTQGHKQ*TAAAAAGSPAPRSP Trigger: GGGGCTACGTGGCGCCGGGCTACCCGCTGCAGCTGCAGCCGTGCACTGCTTATGTCCCTGTGTATCCGGTGGGCACGCCCTACGCAGGCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS CCA 90 bp | TGGTGGTCAGCACAGCGATGGGCATGTAGTCGTGTGGCGGACGCCTaGGCTCCAACAGAGCCAATCCTGGGCCCTGGGGCGGCGGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: WWSAQRWACSRVADA*APTEPILGPGAAGA Trigger: TGCCCCCGCCGCCCCAGGGCCCAGGATTGGCTCTGTTGGAGCCCAGGCGTCCGCCACACGACTACATGCCCATCGCTGTGCTGACCACCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS GCA 90 bp | CAGCAGAGGCCAGGCCACCTGCTCCTAAGCGCGGGAGGGTGGCGGTaGCAGACTGGTGGTAATGGTGGTGGTGGTGGTGATGTGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: QQRPGHLLLSAGGWR*QTGGNGGGGGDVRM Trigger: CATCCTCACATCACCACCACCACCACCATTACCACCAGTCTGGCACCGCCACCCTCCCGCGCTTAGGAGCAGGTGGCCTGGCCTCTGCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS TCA 90 bp | GATGCCCACGGCCAGGGAGATGAAGGAGAAATTCCGGGCTTCGCGTaGAGCGATCTCGGCAGACACCAAATCTCCGCGGGCCAAAGCCGT | + |
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Preference number: 5 (lower is better) Translates to: DAHGQGDEGEIPGFA*SDLGRHQISAGQSR Trigger: ACGGCTTTGGCCCGCGGAGATTTGGTGTCTGCCGAGATCGCTTCACGCGAAGCCCGGAATTTCTCCTTCATCTCCCTGGCCGTGGGCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS TCA 90 bp | GGATGGTACAAAGCACCATGGCTGCGATGCCCACGGCCAGGGAGATaGAGGAGAAATTCCGGGCTTCGCGTGAAGCGATCTCGGCAGACA | + |
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Preference number: 5 (lower is better) Translates to: GWYKAPWLRCPRPGR*RRNSGLRVKRSRQT Trigger: TGTCTGCCGAGATCGCTTCACGCGAAGCCCGGAATTTCTCCTTCATCTCCCTGGCCGTGGGCATCGCAGCCATGGTGCTTTGTACCATCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS GCA 90 bp | GGCGATGATGATGACTACAGTGAGGATGGTACAAAGCACCATGGCTaGGATGCCCACGGCCAGGGAGATGAAGGAGAAATTCCGGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: GDDDDYSEDGTKHHG*DAHGQGDEGEIPGF Trigger: GAAGCCCGGAATTTCTCCTTCATCTCCCTGGCCGTGGGCATCGCAGCCATGGTGCTTTGTACCATCCTCACTGTAGTCATCATCATCGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS GCA 72 bp | CTCCAGGACCCCCGGGGGTCCCGCCTGCGTAGGGCGTaGCCACCGGATACACAGGGACATAAGCAGTGCACG | + |
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Preference number: 6 (lower is better) Translates to: LQDPRGSRLRRA*PPDTQGHKQCT Trigger: CGTGCACTGCTTATGTCCCTGTGTATCCGGTGGGCACGCCCTACGCAGGCGGGACCCCCGGGGGTCCTGGAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS GCA 72 bp | AGGGCGTGCCCACCGGATACACAGGGACATAAGCAGTaGACGGCTGCAGCTGCAGCGGGTAGCCCGGCGCCA | + |
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Preference number: 6 (lower is better) Translates to: RACPPDTQGHKQ*TAAAAAGSPAP Trigger: TGGCGCCGGGCTACCCGCTGCAGCTGCAGCCGTGCACTGCTTATGTCCCTGTGTATCCGGTGGGCACGCCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS GCA 72 bp | CCAGGCCACCTGCTCCTAAGCGCGGGAGGGTGGCGGTaGCAGACTGGTGGTAATGGTGGTGGTGGTGGTGAT | + |
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Preference number: 6 (lower is better) Translates to: PGHLLLSAGGWR*QTGGNGGGGGD Trigger: ATCACCACCACCACCACCATTACCACCAGTCTGGCACCGCCACCCTCCCGCGCTTAGGAGCAGGTGGCCTGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS CCA 72 bp | TGGGCCAGAAGCAGCAGATGGTGGTCAGCACAGCGATaGGCATGTAGTCGTGTGGCGGACGCCTGGGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: WARSSRWWSAQR*ACSRVADAWAP Trigger: TGGAGCCCAGGCGTCCGCCACACGACTACATGCCCATCGCTGTGCTGACCACCATCTGCTGCTTCTGGCCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS TCA 72 bp | GGCCAGGGAGATGAAGGAGAAATTCCGGGCTTCGCGTaGAGCGATCTCGGCAGACACCAAATCTCCGCGGGC | + |
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Preference number: 6 (lower is better) Translates to: GQGDEGEIPGFA*SDLGRHQISAG Trigger: GCCCGCGGAGATTTGGTGTCTGCCGAGATCGCTTCACGCGAAGCCCGGAATTTCTCCTTCATCTCCCTGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS TCA 72 bp | AAAGCACCATGGCTGCGATGCCCACGGCCAGGGAGATaGAGGAGAAATTCCGGGCTTCGCGTGAAGCGATCT | + |
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Preference number: 6 (lower is better) Translates to: KAPWLRCPRPGR*RRNSGLRVKRS Trigger: AGATCGCTTCACGCGAAGCCCGGAATTTCTCCTTCATCTCCCTGGCCGTGGGCATCGCAGCCATGGTGCTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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| CDS GCA 72 bp | GATGACTACAGTGAGGATGGTACAAAGCACCATGGCTaGGATGCCCACGGCCAGGGAGATGAAGGAGAAATT | + |
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Preference number: 6 (lower is better) Translates to: DDYSEDGTKHHG*DAHGQGDEGEI Trigger: AATTTCTCCTTCATCTCCCTGGCCGTGGGCATCGCAGCCATGGTGCTTTGTACCATCCTCACTGTAGTCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015620.7 |
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