Pregenerated sensors for PRRG4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027171Ensembl transcript IDs: ENSMUST00000028593.11, ENSMUST00000126824.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTGGTTCAGTTCCTGTGGCTAGCCACCAGGCTCAGGGGTCCTCCTaGGTCCTCCCCACAGTGCTGAGATTACAGGTGTGCACCCAAGTA | + |
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Preference number: 1 (lower is better) Translates to: PGSVPVASHQAQGSS*VLPTVLRLQVCTQV Trigger: TACTTGGGTGCACACCTGTAATCTCAGCACTGTGGGGAGGACTCAGGAGGACCCCTGAGCCTGGTGGCTAGCCACAGGAACTGAACCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR GCA 90 bp | TCAAGTCCAAGACGAAAGCAGAGCTGTGGTGAATTCTCTTCTGTATaGATCATTCCTTTATTCCTTGCAATGTGTCATAAGAAGCTGAAC | + |
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Preference number: 1 (lower is better) Translates to: SSPRRKQSCGEFSSV*IIPLFLAMCHKKLN Trigger: GTTCAGCTTCTTATGACACATTGCAAGGAATAAAGGAATGATGCATACAGAAGAGAATTCACCACAGCTCTGCTTTCGTCTTGGACTTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR TCA 90 bp | GGATTATATCAAGGCCACAGATTTACAGCAAAGCATCAAATTCTATaGAGTATTTTTAGCCCAAAAGAAATCCTAAGGAAGAGAAGACCC | + |
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Preference number: 1 (lower is better) Translates to: GLYQGHRFTAKHQIL*SIFSPKEILRKRRP Trigger: GGGTCTTCTCTTCCTTAGGATTTCTTTTGGGCTAAAAATACTTCATAGAATTTGATGCTTTGCTGTAAATCTGTGGCCTTGATATAATCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CCA 90 bp | GTTTGTTCATTTTGTTTGTTGTTGTTGGTTGGTTTGTTTCAAACATaGGTATTGAGGATTGAACTCAGGTCCTTCTATTTGTATGACCAG | + |
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Preference number: 1 (lower is better) Translates to: VCSFCLLLLVGLFQT*VLRIELRSFYLYDQ Trigger: CTGGTCATACAAATAGAAGGACCTGAGTTCAATCCTCAATACCCATGTTTGAAACAAACCAACCAACAACAACAAACAAAATGAACAAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR-3UTR TCA 90 bp | TGCCTCTGTCTTCTGAGTGCTGTGATTAAAGACATATACCCCTACCTCGAAGCCATTCAACCACATGAATaGATGTCTTCCAGCAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: CLCLLSAVIKDIYPYLEAIQPHE*MSSSKA Trigger: TGCCTTGCTGGAAGACATTCATTCATGTGGTTGAAT...GGCTTCGAGGTAGGGGTATATGTCTTTAATCACAGCACTCAGAAGACAGAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR-3UTR GCA 90 bp | AAATGTACTCGGAGAATCAAGGGAGACAGAGTTTGGCTTAATTGTACAGCATGTACTCAGAGATCCTTCTaGCTCTGTCTTCTGAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: KCTRRIKGDRVWLNCTACTQRSF*LCLLSA Trigger: AGCACTCAGAAGACAGAGGCAGAAGGATCTCTGAGT...ACATGCTGTACAATTAAGCCAAACTCTGTCTCCCTTGATTCTCCGAGTACATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR-3UTR CCA 90 bp | TGCCTCTGTCTTCTGAGTGCTGTGATTAAAGACATATACCCCTACCTCGAAGCCCGGACAGTTCCTGGTTaGCTAATTCTAATTATTCTA | + |
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Preference number: 2 (lower is better) Translates to: CLCLLSAVIKDIYPYLEARTVPG*LILIIL Trigger: TAGAATAATTAGAATTAGCCAACCAGGAACTGTCCG...GGCTTCGAGGTAGGGGTATATGTCTTTAATCACAGCACTCAGAAGACAGAGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CAA 90 bp | TCATTTTGTTTGTTGTTGTTGGTTGGTTTGTTTCAAACATGGGTATaGAGGATTGAACTCAGGTCCTTCTATTTGTATGACCAGCACTCT | + |
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Preference number: 2 (lower is better) Translates to: SFCLLLLVGLFQTWV*RIELRSFYLYDQHS Trigger: AGAGTGCTGGTCATACAAATAGAAGGACCTGAGTTCAATCCTCAATACCCATGTTTGAAACAAACCAACCAACAACAACAAACAAAATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CAA 90 bp | GTGTTTGTAGGCACACACCACATTATCCAGCTACAACAAACATTTTaGAACCAGTTCAGTATACATTGCAAAAGGCACTTTCTTCTTAAT | + |
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Preference number: 2 (lower is better) Translates to: VFVGTHHIIQLQQTF*NQFSIHCKRHFLLN Trigger: ATTAAGAAGAAAGTGCCTTTTGCAATGTATACTGAACTGGTTCAAAAATGTTTGTTGTAGCTGGATAATGTGGTGTGTGCCTACAAACAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CAA 90 bp | GAAGAGAAGACCCAATCTCATGATCTAAGATCGGACAGTTCCTGGTaGGCTAATTCTAATTATTCTACTAATAACAAACTGTGTTTTCAG | + |
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Preference number: 2 (lower is better) Translates to: EEKTQSHDLRSDSSW*ANSNYSTNNKLCFQ Trigger: CTGAAAACACAGTTTGTTATTAGTAGAATAATTAGAATTAGCCAACCAGGAACTGTCCGATCTTAGATCATGAGATTGGGTCTTCTCTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR TCA 72 bp | GTTCCTGTGGCTAGCCACCAGGCTCAGGGGTCCTCCTaGGTCCTCCCCACAGTGCTGAGATTACAGGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: VPVASHQAQGSS*VLPTVLRLQVC Trigger: GCACACCTGTAATCTCAGCACTGTGGGGAGGACTCAGGAGGACCCCTGAGCCTGGTGGCTAGCCACAGGAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR-3UTR CAA 90 bp | GGCTCAGGGGTCCTCCTGAGTCCTCCCCACAGTGCTGAGATTACAGGTGTGCACAACAAACAAAACCTCTaGACACCATTGAACTGTGAT | + |
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Preference number: 3 (lower is better) Translates to: GSGVLLSPPHSAEITGVHNKQNL*TPLNCD Trigger: ATCACAGTTCAATGGTGTCAAGAGGTTTTGTTTGTT...GTGCACACCTGTAATCTCAGCACTGTGGGGAGGACTCAGGAGGACCCCTGAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR TCA 72 bp | GCATCTAAGATGCAAAGGCTTTCTGGTTGGTACTGCTaGGGACCTCAAAGCCAGGGCCTCATGGACATGAAG | + |
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Preference number: 3 (lower is better) Translates to: ASKMQRLSGWYC*GPQSQGLMDMK Trigger: CTTCATGTCCATGAGGCCCTGGCTTTGAGGTCCTCAGCAGTACCAACCAGAAAGCCTTTGCATCTTAGATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR TCA 72 bp | ACTGCTGAGGACCTCAAAGCCAGGGCCTCATGGACATaGAGTAAATGTTCAACCACTTGCCTCTACCATTCT | + |
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Preference number: 3 (lower is better) Translates to: TAEDLKARASWT*SKCSTTCLYHS Trigger: AGAATGGTAGAGGCAAGTGGTTGAACATTTACTTCATGTCCATGAGGCCCTGGCTTTGAGGTCCTCAGCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR TCA 72 bp | ATGATGCTTTGCTTCTATCTCCAGCATGCTCACGCATaGGCACACAGACACACACACACACACACACACTCA | + |
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Preference number: 3 (lower is better) Translates to: MMLCFYLQHAHA*AHRHTHTHTHS Trigger: TGAGTGTGTGTGTGTGTGTGTGTGTCTGTGTGCTCATGCGTGAGCATGCTGGAGATAGAAGCAAAGCATCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR-3UTR CAA 90 bp | ATTAGAACAGAAAACCAAGGGATTATATCAAGGCCACAGATTTACAGCAAAGCAACAGAGCCCAGGGCCTaGAACTCTCATCCCGCCCCT | + |
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Preference number: 3 (lower is better) Translates to: IRTENQGIISRPQIYSKATEPRA*NSHPAP Trigger: AGGGGCGGGATGAGAGTTCAAGGCCCTGGGCTCTGT...TGCTTTGCTGTAAATCTGTGGCCTTGATATAATCCCTTGGTTTTCTGTTCTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR TCA 72 bp | CATGCATGCAAGCTTGTGCATGTAGAGGCCAGAAGTTaGCATTGGTATCTTCTTCAACTGCTCTCCACCTTA | + |
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Preference number: 3 (lower is better) Translates to: HACKLVHVEARS*HWYLLQLLSTL Trigger: TAAGGTGGAGAGCAGTTGAAGAAGATACCAATGTCAACTTCTGGCCTCTACATGCACAAGCTTGCATGCATG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR GCA 72 bp | TATAAACCAAGGTGGCTTCGAACTCAGAGATCCTTCTaGCTCTGTCTTCTGAGTGCTGTGATTAAAGACATA | + |
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Preference number: 3 (lower is better) Translates to: YKPRWLRTQRSF*LCLLSAVIKDI Trigger: TATGTCTTTAATCACAGCACTCAGAAGACAGAGGCAGAAGGATCTCTGAGTTCGAAGCCACCTTGGTTTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR TCA 72 bp | ATCCAGTTCAAGTCCAAGACGAAAGCAGAGCTGTGGTaGATTCTCTTCTGTATGCATCATTCCTTTATTCCT | + |
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Preference number: 3 (lower is better) Translates to: IQFKSKTKAELW*ILFCMHHSFIP Trigger: AGGAATAAAGGAATGATGCATACAGAAGAGAATTCACCACAGCTCTGCTTTCGTCTTGGACTTGAACTGGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR-3UTR CAA 90 bp | TGCATGCAAGCTTGTGCATGTAGAGGCCAGAAGTTGACATTGGTATCTTCTTCATTGTTGTTGGTTGGTTaGTTTCAAACATGGGTATTG | + |
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Preference number: 3 (lower is better) Translates to: CMQACACRGQKLTLVSSSLLLVG*FQTWVL Trigger: CAATACCCATGTTTGAAACAAACCAACCAACAACAA...TGAAGAAGATACCAATGTCAACTTCTGGCCTCTACATGCACAAGCTTGCATGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR GCA 72 bp | AGACGAAAGCAGAGCTGTGGTGAATTCTCTTCTGTATaGATCATTCCTTTATTCCTTGCAATGTGTCATAAG | + |
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Preference number: 3 (lower is better) Translates to: RRKQSCGEFSSV*IIPLFLAMCHK Trigger: CTTATGACACATTGCAAGGAATAAAGGAATGATGCATACAGAAGAGAATTCACCACAGCTCTGCTTTCGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR TCA 72 bp | GCACACACCACATTATCCAGCTACAACAAACATTTTTaGACCAGTTCAGTATACATTGCAAAAGGCACTTTC | + |
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Preference number: 3 (lower is better) Translates to: AHTTLSSYNKHF*TSSVYIAKGTF Trigger: GAAAGTGCCTTTTGCAATGTATACTGAACTGGTTCAAAAATGTTTGTTGTAGCTGGATAATGTGGTGTGTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR TCA 72 bp | TGTTGTTGTTGGTTGGTTTGTTTCAAACATGGGTATTaGGGATTGAACTCAGGTCCTTCTATTTGTATGACC | + |
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Preference number: 3 (lower is better) Translates to: CCCWLVCFKHGY*GLNSGPSICMT Trigger: GGTCATACAAATAGAAGGACCTGAGTTCAATCCTCAATACCCATGTTTGAAACAAACCAACCAACAACAACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CCA 72 bp | TTTTGTTTGTTGTTGTTGGTTGGTTTGTTTCAAACATaGGTATTGAGGATTGAACTCAGGTCCTTCTATTTG | + |
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Preference number: 3 (lower is better) Translates to: FCLLLLVGLFQT*VLRIELRSFYL Trigger: CAAATAGAAGGACCTGAGTTCAATCCTCAATACCCATGTTTGAAACAAACCAACCAACAACAACAAACAAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CCA 72 bp | AAGACCCAATCTCATGATCTAAGATCGGACAGTTCCTaGTTGGCTAATTCTAATTATTCTACTAATAACAAA | + |
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Preference number: 3 (lower is better) Translates to: KTQSHDLRSDSS*LANSNYSTNNK Trigger: TTTGTTATTAGTAGAATAATTAGAATTAGCCAACCAGGAACTGTCCGATCTTAGATCATGAGATTGGGTCTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR GCA 90 bp | GGCTCAGGGGTCCTCCTGAGTCCTCCCCACAGTGCTGAGATTACAGGTGTGCACTACCCTAAATCCTCTTaGAGGCCCAGGATAGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GSGVLLSPPHSAEITGVHYPKSS*RPRIGR Trigger: CCTCCCTATCCTGGGCCTGCAAGAGGATTTAGGGTA...GTGCACACCTGTAATCTCAGCACTGTGGGGAGGACTCAGGAGGACCCCTGAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CAA 72 bp | GTGTTTTCAGACAGGGTCTTGACAGAGCCCAGGGCCTaGAACTCTCATCCCGCCCCTCGAAGCCTCCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: VFSDRVLTEPRA*NSHPAPRSLLS Trigger: ACTCAGGAGGCTTCGAGGGGCGGGATGAGAGTTCAAGGCCCTGGGCTCTGTCAAGACCCTGTCTGAAAACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR TCA 90 bp | GGCTCAGGGGTCCTCCTGAGTCCTCCCCACAGTGCTGAGATTACAGGTGTGCACTCTTGTGTAGTTGGCTaGAGAGCTTGGATATGGCCG | + |
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Preference number: 4 (lower is better) Translates to: GSGVLLSPPHSAEITGVHSCVVG*RAWIWP Trigger: CGGCCATATCCAAGCTCTTCAGCCAACTACACAAGA...GTGCACACCTGTAATCTCAGCACTGTGGGGAGGACTCAGGAGGACCCCTGAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR CCA 90 bp | GGCTCAGGGGTCCTCCTGAGTCCTCCCCACAGTGCTGAGATTACAGGTGTGCACGTAAGTCTGGGCAGCTaGCTGAGTACGATCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: GSGVLLSPPHSAEITGVHVSLGS*LSTIRS Trigger: ACTTCTGATCGTACTCAGCCAGCTGCCCAGACTTAC...GTGCACACCTGTAATCTCAGCACTGTGGGGAGGACTCAGGAGGACCCCTGAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR CCA 90 bp | GTTTTCAGACAGGGTCTTGACAGAGCCCAGGGCCTTGAACTCTCATCCCGCCCCCGCAAAGACTTCTTCTaGGGCATGTTCGGAATCCTT | + |
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Preference number: 4 (lower is better) Translates to: VFRQGLDRAQGLELSSRPRKDFF*GMFGIL Trigger: AAGGATTCCGAACATGCCCCAGAAGAAGTCTTTGCG...GGGGCGGGATGAGAGTTCAAGGCCCTGGGCTCTGTCAAGACCCTGTCTGAAAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR TCA 90 bp | GGCTCAGGGGTCCTCCTGAGTCCTCCCCACAGTGCTGAGATTACAGGTGTGCACCTCTTTGTTAACATCTaGTCCTGTGGTTGGTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: GSGVLLSPPHSAEITGVHLFVNI*SCGWSF Trigger: AAAGGACCAACCACAGGATCAGATGTTAACAAAGAG...GTGCACACCTGTAATCTCAGCACTGTGGGGAGGACTCAGGAGGACCCCTGAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR TCA 90 bp | CTCTGTCTTCTGAGTGCTGTGATTAAAGACATATACCCCTACCTCGAAGCCTTGCCAGGTCCCCAGGAGTaGAGAGTTCTAGATCAAACC | + |
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Preference number: 4 (lower is better) Translates to: LCLLSAVIKDIYPYLEALPGPQE*RVLDQT Trigger: GGTTTGATCTAGAACTCTTCACTCCTGGGGACCTGG...CAAGGCTTCGAGGTAGGGGTATATGTCTTTAATCACAGCACTCAGAAGACAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR CCA 90 bp | TTCTGCCTCTGTCTTCTGAGTGCTGTGATTAAAGACATATACCCCTACCTCGAAGGCTTCGGAAAACAATaGAGGGTGTGTATCTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: FCLCLLSAVIKDIYPYLEGFGKQ*RVCIWP Trigger: CGGCCAGATACACACCCTCCATTGTTTTCCGAAGCC...TTCGAGGTAGGGGTATATGTCTTTAATCACAGCACTCAGAAGACAGAGGCAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR GCA 90 bp | CCCACCAGGGAGAACAAATTATTCAACCACATGAATGAATGTCTTCCAGCAAGGGATACAATGAGGAACTaGGAGGGTAAGTCTGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PTRENKLFNHMNECLPARDTMRN*EGKSGQ Trigger: CTGCCCAGACTTACCCTCGCAGTTCCTCATTGTATC...CCTTGCTGGAAGACATTCATTCATGTGGTTGAATAATTTGTTCTCCCTGGTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR GCA 90 bp | TTCTGCCTCTGTCTTCTGAGTGCTGTGATTAAAGACATATACCCCTACCTCGAAGTGCTTTCTGGTCAGTaGTACTGCCTGTTCATAGGA | + |
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Preference number: 4 (lower is better) Translates to: FCLCLLSAVIKDIYPYLEVLSGQ*YCLFIG Trigger: TCCTATGAACAGGCAGTAGCACTGACCAGAAAGCAC...TTCGAGGTAGGGGTATATGTCTTTAATCACAGCACTCAGAAGACAGAGGCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CAA 72 bp | TCATGCATGCAAGCTTGTGCATGTAGAGGCCAGAAGTaGACATTGGTATCTTCTTCAACTGCTCTCCACCTT | + |
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Preference number: 4 (lower is better) Translates to: SCMQACACRGQK*TLVSSSTALHL Trigger: AAGGTGGAGAGCAGTTGAAGAAGATACCAATGTCAACTTCTGGCCTCTACATGCACAAGCTTGCATGCATGA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR TCA 90 bp | ATGCAAGCTTGTGCATGTAGAGGCCAGAAGTTGACATTGGTATCTTCTTCAACTGTTTGCTGCTTCTTTTaGCGCAAAGACTTCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: MQACACRGQKLTLVSSSTVCCFF*RKDFFW Trigger: CCAGAAGAAGTCTTTGCGTCAAAAGAAGCAGCAAAC...AGTTGAAGAAGATACCAATGTCAACTTCTGGCCTCTACATGCACAAGCTTGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CAA 72 bp | TTAATTGTACAGCATGTGCTTAGCACATATGATGCTTaGCTTCTATCTCCAGCATGCTCACGCATGAGCACA | + |
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Preference number: 4 (lower is better) Translates to: LIVQHVLSTYDA*LLSPACSRMST Trigger: TGTGCTCATGCGTGAGCATGCTGGAGATAGAAGCAAAGCATCATATGTGCTAAGCACATGCTGTACAATTAA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR TCA 90 bp | AGATCGGACAGTTCCTGGTTGGCTAATTCTAATTATTCTACTAATAACAAACTGATAGGGAGGTGGTGGTaGGACACTGTGCTTTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: RSDSSWLANSNYSTNNKLIGRWW*DTVLSG Trigger: ACCAGAAAGCACAGTGTCTCACCACCACCTCCCTAT...CAGTTTGTTATTAGTAGAATAATTAGAATTAGCCAACCAGGAACTGTCCGATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR GCA 90 bp | TCTTCTGTATGCATCATTCCTTTATTCCTTGCAATGTGTCATAAGAAGCTGAACGGTGGTGAGACACTGTaGTTTCTGGTCAGTGCTACT | + |
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Preference number: 4 (lower is better) Translates to: SSVCIIPLFLAMCHKKLNGGETL*FLVSAT Trigger: AGTAGCACTGACCAGAAAGCACAGTGTCTCACCACC...GTTCAGCTTCTTATGACACATTGCAAGGAATAAAGGAATGATGCATACAGAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR CCA 90 bp | ATGCAAGCTTGTGCATGTAGAGGCCAGAAGTTGACATTGGTATCTTCTTCAACTCCCCCAAAATCTCTCTaGCTTCTTCATAACTACAGA | + |
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Preference number: 4 (lower is better) Translates to: MQACACRGQKLTLVSSSTPPKSL*LLHNYR Trigger: TCTGTAGTTATGAAGAAGCCAGAGAGATTTTGGGGG...AGTTGAAGAAGATACCAATGTCAACTTCTGGCCTCTACATGCACAAGCTTGCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CAA 72 bp | ATGCAAGCTTGTGCATGTAGAGGCCAGAAGTTGACATaGGTATCTTCTTCAACTGCTCTCCACCTTAATTTT | + |
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Preference number: 4 (lower is better) Translates to: MQACACRGQKLT*VSSSTALHLNF Trigger: AAAATTAAGGTGGAGAGCAGTTGAAGAAGATACCAATGTCAACTTCTGGCCTCTACATGCACAAGCTTGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CAA 72 bp | GGCACACACCACATTATCCAGCTACAACAAACATTTTaGAACCAGTTCAGTATACATTGCAAAAGGCACTTT | + |
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Preference number: 4 (lower is better) Translates to: GTHHIIQLQQTF*NQFSIHCKRHF Trigger: AAAGTGCCTTTTGCAATGTATACTGAACTGGTTCAAAAATGTTTGTTGTAGCTGGATAATGTGGTGTGTGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| 3UTR CAA 72 bp | TTGTTGTTGTTGGTTGGTTTGTTTCAAACATGGGTATaGAGGATTGAACTCAGGTCCTTCTATTTGTATGAC | + |
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Preference number: 4 (lower is better) Translates to: LLLLVGLFQTWV*RIELRSFYLYD Trigger: GTCATACAAATAGAAGGACCTGAGTTCAATCCTCAATACCCATGTTTGAAACAAACCAACCAACAACAACAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS TCA 90 bp | AAATACCCTAAATCCTCTTGCAGGCCCAGGATAGGGAGGTGGTGGTaGGACACTGTGCTTTCTGGTCAGTGCTACTGCCTGTTCATAGGA | + |
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Preference number: 5 (lower is better) Translates to: KYPKSSCRPRIGRWW*DTVLSGQCYCLFIG Trigger: TCCTATGAACAGGCAGTAGCACTGACCAGAAAGCACAGTGTCTCACCACCACCTCCCTATCCTGGGCCTGCAAGAGGATTTAGGGTATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS CCA 90 bp | ATGTTGATGGAGATAAGACAGCTTCCTCAGGGCTTCGGAAAACAATaGAGGGTGTGTATCTGGCCGTTCTTGTGTAGTTGGCTGAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: MLMEIRQLPQGFGKQ*RVCIWPFLCSWLKS Trigger: GCTCTTCAGCCAACTACACAAGAACGGCCAGATACACACCCTCCATTGTTTTCCGAAGCCCTGAGGAAGCTGTCTTATCTCCATCAACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS-3UTR CAA 90 bp | CTCTGTCTTCTGAGTGCTGTGATTAAAGACATATACCCCTACCTCGAAGCCTTGCATCCTCTGAAGATGTaGATGGAGATAAGACAGCTT | + |
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Preference number: 5 (lower is better) Translates to: LCLLSAVIKDIYPYLEALHPLKM*MEIRQL Trigger: AAGCTGTCTTATCTCCATCAACATCTTCAGAGGATG...CAAGGCTTCGAGGTAGGGGTATATGTCTTTAATCACAGCACTCAGAAGACAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS TCA 72 bp | GGGGCATGTTCGGAATCCTTTAGGCTTCTGATACAATaGGGAACTGCGAGGGTAAGTCTGGGCAGCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GACSESFRLLIQ*GTARVSLGSWL Trigger: CAGCCAGCTGCCCAGACTTACCCTCGCAGTTCCTCATTGTATCAGAAGCCTAAAGGATTCCGAACATGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028593.11 ENSMUST00000126824.2 |
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| CDS TCA 72 bp | GGAGGGTGTGTATCTGGCCGTTCTTGTGTAGTTGGCTaGAGAGCTTGGATATGGCCGCCTTTTACACTTGGT | + |
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Preference number: 6 (lower is better) Translates to: GGCVSGRSCVVG*RAWIWPPFTLG Trigger: ACCAAGTGTAAAAGGCGGCCATATCCAAGCTCTTCAGCCAACTACACAAGAACGGCCAGATACACACCCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS TCA 72 bp | GAGGCGGCGGTGCATAAAGATGTTTGCTGCTTCTTTTaGCGCAAAGACTTCTTCTGGGGCATGTTCGGAATC | + |
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Preference number: 6 (lower is better) Translates to: EAAVHKDVCCFF*RKDFFWGMFGI Trigger: GATTCCGAACATGCCCCAGAAGAAGTCTTTGCGTCAAAAGAAGCAGCAAACATCTTTATGCACCGCCGCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028593.11 ENSMUST00000126824.2 |
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| CDS TCA 72 bp | ACTCCTCATAGCACTCTCTCTCCAGGTCCCCAGGAGTaGAGAGTTCTAGATCAAACCTATTGTTCAGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: TPHSTLSPGPQE*RVLDQTYCSGG Trigger: GCCTCCTGAACAATAGGTTTGATCTAGAACTCTTCACTCCTGGGGACCTGGAGAGAGAGTGCTATGAGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028593.11 ENSMUST00000126824.2 |
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| CDS CCA 72 bp | GAGATAAGACAGCTTCCTCAGGGCTTCGGAAAACAATaGAGGGTGTGTATCTGGCCGTTCTTGTGTAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: EIRQLPQGFGKQ*RVCIWPFLCSW Trigger: CCAACTACACAAGAACGGCCAGATACACACCCTCCATTGTTTTCCGAAGCCCTGAGGAAGCTGTCTTATCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028593.11 |
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| CDS CAA 72 bp | AGGTCCCCAGGAGTGAAGAGTTCTAGATCAAACCTATaGTTCAGGAGGCGGCGGTGCATAAAGATGTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: RSPGVKSSRSNL*FRRRRCIKMFA Trigger: AGCAAACATCTTTATGCACCGCCGCCTCCTGAACAATAGGTTTGATCTAGAACTCTTCACTCCTGGGGACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028593.11 ENSMUST00000126824.2 |
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