Pregenerated sensors for PRR9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056270Ensembl transcript IDs: ENSMUST00000070284.4
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATACAGAGAACTATCTTCAGAGGTACAGACCAAGTCCTGGAATACTaGGGAAGTCAGGAGACAAGACAGTATCTTACACAGAGATACCCA | + |
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Preference number: 1 (lower is better) Translates to: IQRTIFRGTDQVLEY*GSQETRQYLTQRYP Trigger: TGGGTATCTCTGTGTAAGATACTGTCTTGTCTCCTGACTTCCTCAGTATTCCAGGACTTGGTCTGTACCTCTGAAGATAGTTCTCTGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| 3UTR TCA 90 bp | GTGATGCTCACCATAAAGCCATTAAATTCAGATTCTCTTGAGGCTTaGAAGAGATACTTGCACTCTGAAAGATGGACAAAGGCATCCTTG | + |
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Preference number: 1 (lower is better) Translates to: VMLTIKPLNSDSLEA*KRYLHSERWTKASL Trigger: CAAGGATGCCTTTGTCCATCTTTCAGAGTGCAAGTATCTCTTTCAAGCCTCAAGAGAATCTGAATTTAATGGCTTTATGGTGAGCATCAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| 3UTR-3UTR TCA 90 bp | TACTTGCACTCTGAAAGATGGACAAAGGCATCCTTGGCCATTATGTACCAGGGGCAAGTCCTGGAATACTaGGGAAGTCAGGAGACAAGA | + |
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Preference number: 2 (lower is better) Translates to: YLHSERWTKASLAIMYQGQVLEY*GSQETR Trigger: TCTTGTCTCCTGACTTCCTCAGTATTCCAGGACTTG...CCCCTGGTACATAATGGCCAAGGATGCCTTTGTCCATCTTTCAGAGTGCAAGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| 3UTR-3UTR TCA 90 bp | AGCACAAAGACTGACAAAGATCTAAAGATCCCAACTTGTGTTTCTTATAGGCTGCCGTCTGCCAGCTGCTaGGAACACTTATTCACAGAG | + |
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Preference number: 2 (lower is better) Translates to: STKTDKDLKIPTCVSYRLPSASC*EHLFTE Trigger: CTCTGTGAATAAGTGTTCTCAGCAGCTGGCAGACGG...CAGCCTATAAGAAACACAAGTTGGGATCTTTAGATCTTTGTCAGTCTTTGTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| 3UTR-3UTR GCA 90 bp | CAAAGCACAAAGACTGACAAAGATCTAAAGATCCCAACTTGTGTTTCTTATAGGATACTCTTGACCGTCTaGCAGCTGCTGAGAACACTT | + |
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Preference number: 2 (lower is better) Translates to: QSTKTDKDLKIPTCVSYRILLTV*QLLRTL Trigger: AAGTGTTCTCAGCAGCTGGCAGACGGTCAAGAGTAT...CCTATAAGAAACACAAGTTGGGATCTTTAGATCTTTGTCAGTCTTTGTGCTTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| 3UTR TCA 72 bp | ACTATCTTCAGAGGTACAGACCAAGTCCTGGAATACTaGGGAAGTCAGGAGACAAGACAGTATCTTACACAG | + |
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Preference number: 3 (lower is better) Translates to: TIFRGTDQVLEY*GSQETRQYLTQ Trigger: CTGTGTAAGATACTGTCTTGTCTCCTGACTTCCTCAGTATTCCAGGACTTGGTCTGTACCTCTGAAGATAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR TCA 90 bp | GAGACAAGACAGTATCTTACACAGAGATACCCACAGGAGAAGGTCACCGTAGGACATGGCTCCGCACACTaGGGAAGGCACTGGTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: ETRQYLTQRYPQEKVTVGHGSAH*GRHWSW Trigger: CCAAGACCAGTGCCTTCCTCAGTGTGCGGAGCCATG...TCCTACGGTGACCTTCTCCTGTGGGTATCTCTGTGTAAGATACTGTCTTGTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR TCA 90 bp | CCTGGAATACTGAGGAAGTCAGGAGACAAGACAGTATCTTACACAGAGATACCCTCTTGGCAGGGGTCCTaGCATGAGGAGACACACACA | + |
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Preference number: 4 (lower is better) Translates to: PGILRKSGDKTVSYTEIPSWQGS*HEETHT Trigger: TGTGTGTGTCTCCTCATGTCAGGACCCCTGCCAAGA...GGGTATCTCTGTGTAAGATACTGTCTTGTCTCCTGACTTCCTCAGTATTCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CCA 90 bp | GAGACAAGACAGTATCTTACACAGAGATACCCACAGGAGAAGGTCACCGTAGGATTGAAGACATGGGGGTaGCACACATGGTTGCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: ETRQYLTQRYPQEKVTVGLKTWG*HTWLLA Trigger: TGCAAGCAACCATGTGTGCCACCCCCATGTCTTCAA...TCCTACGGTGACCTTCTCCTGTGGGTATCTCTGTGTAAGATACTGTCTTGTCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CCA 90 bp | CTATCTTCAGAGGTACAGACCAAGTCCTGGAATACTGAGGAAGTCAGGAGACAAGGAAGGCACTGGTCTTaGCTTGGAGGTAGACATGGA | + |
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Preference number: 4 (lower is better) Translates to: LSSEVQTKSWNTEEVRRQGRHWS*LGGRHG Trigger: TCCATGTCTACCTCCAAGCCAAGACCAGTGCCTTCC...TTGTCTCCTGACTTCCTCAGTATTCCAGGACTTGGTCTGTACCTCTGAAGATAG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR GCA 90 bp | CCTGGAATACTGAGGAAGTCAGGAGACAAGACAGTATCTTACACAGAGATACCCCACATCCTCAGCTTGTaGCTGGCACTTTTCTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: PGILRKSGDKTVSYTEIPHILSL*LALFLG Trigger: ACCCAAGAAAAGTGCCAGGCACAAGCTGAGGATGTG...GGGTATCTCTGTGTAAGATACTGTCTTGTCTCCTGACTTCCTCAGTATTCCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CCA 90 bp | CTGAGGAAGTCAGGAGACAAGACAGTATCTTACACAGAGATACCCACAGGAGAATCCTCAGCTTGTGCCTaGCACTTTTCTTGGGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: LRKSGDKTVSYTEIPTGESSACA*HFSWVF Trigger: AAAGACCCAAGAAAAGTGCCAGGCACAAGCTGAGGA...TTCTCCTGTGGGTATCTCTGTGTAAGATACTGTCTTGTCTCCTGACTTCCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| 3UTR CAA 72 bp | AGATACTTGCACTCTGAAAGATGGACAAAGGCATCCTaGGCCATTATGTACCAGGGGCTAAGTGAGGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: RYLHSERWTKAS*AIMYQGLSEVL Trigger: CAAAACCTCACTTAGCCCCTGGTACATAATGGCCAAGGATGCCTTTGTCCATCTTTCAGAGTGCAAGTATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CCA 90 bp | AGCACAAAGACTGACAAAGATCTAAAGATCCCAACTTGTGTTTCTTATAGGCTGTGGGGGTGGCACACATaGTTGCTTGCACTGTTGATC | + |
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Preference number: 4 (lower is better) Translates to: STKTDKDLKIPTCVSYRLWGWHT*LLALLI Trigger: GATCAACAGTGCAAGCAACCATGTGTGCCACCCCCA...CAGCCTATAAGAAACACAAGTTGGGATCTTTAGATCTTTGTCAGTCTTTGTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CCA 90 bp | AGCACAAAGACTGACAAAGATCTAAAGATCCCAACTTGTGTTTCTTATAGGCTGTTCCTGAGCTTGTTGTaGACATTTATCTTGGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: STKTDKDLKIPTCVSYRLFLSLL*TFILAG Trigger: CCCTGCCAAGATAAATGTCCACAACAAGCTCAGGAA...CAGCCTATAAGAAACACAAGTTGGGATCTTTAGATCTTTGTCAGTCTTTGTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CAA 90 bp | AGACAGTATCTTACACAGAGATACCCACAGGAGAAGGTCACCGTAGGACTGGGGGGCACTGGTCTTGGCTaGGAGGTAGACATGGATCTT | + |
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Preference number: 5 (lower is better) Translates to: RQYLTQRYPQEKVTVGLGGTGLG*EVDMDL Trigger: AAGATCCATGTCTACCTCCAAGCCAAGACCAGTGCC...CCCCAGTCCTACGGTGACCTTCTCCTGTGGGTATCTCTGTGTAAGATACTGTCT 52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CAA 90 bp | AGACAGTATCTTACACAGAGATACCCACAGGAGAAGGTCACCGTAGGACTGGGGGGGTGGCACACATGGTaGCTTGCACTGTTGATCATT | + |
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Preference number: 5 (lower is better) Translates to: RQYLTQRYPQEKVTVGLGGWHTW*LALLII Trigger: AATGATCAACAGTGCAAGCAACCATGTGTGCCACCC...CCCCAGTCCTACGGTGACCTTCTCCTGTGGGTATCTCTGTGTAAGATACTGTCT 51% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS TCA 90 bp | TTCCTGAGCTTGTTGTGGACATTTATCTTGGCAGGGGTCCTGACATaGGGAGACACACACATCCTCAGCTTGTGCCTGGCACTTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: FLSLLWTFILAGVLT*GDTHILSLCLALFL Trigger: CAAGAAAAGTGCCAGGCACAAGCTGAGGATGTGTGTGTCTCCTCATGTCAGGACCCCTGCCAAGATAAATGTCCACAACAAGCTCAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CAA 90 bp | TCAGAGGTACAGACCAAGTCCTGGAATACTGAGGAAGTCAGGAGACAAGACAGTCTTTTCTTGGGTCTTTaGAAGACATGGGGGTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: SEVQTKSWNTEEVRRQDSLFLGL*KTWGWH Trigger: GTGCCACCCCCATGTCTTCAAAAGACCCAAGAAAAG...ACTGTCTTGTCTCCTGACTTCCTCAGTATTCCAGGACTTGGTCTGTACCTCTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CAA 90 bp | TCTTCAGAGGTACAGACCAAGTCCTGGAATACTGAGGAAGTCAGGAGACAAGACACACACATCCTCAGCTaGTGCCTGGCACTTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: SSEVQTKSWNTEEVRRQDTHILS*CLALFL Trigger: CAAGAAAAGTGCCAGGCACAAGCTGAGGATGTGTGT...GTCTTGTCTCCTGACTTCCTCAGTATTCCAGGACTTGGTCTGTACCTCTGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CAA 90 bp | TCTTCAGAGGTACAGACCAAGTCCTGGAATACTGAGGAAGTCAGGAGACAAGACTGCCTGGCACTTTTCTaGGGTCTTTTGAAGACATGG | + |
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Preference number: 5 (lower is better) Translates to: SSEVQTKSWNTEEVRRQDCLALF*GLLKTW Trigger: CCATGTCTTCAAAAGACCCAAGAAAAGTGCCAGGCA...GTCTTGTCTCCTGACTTCCTCAGTATTCCAGGACTTGGTCTGTACCTCTGAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS-3UTR CAA 90 bp | ACCAAGTCCTGGAATACTGAGGAAGTCAGGAGACAAGACAGTATCTTACACAGATGGATCTTGGCCTTGTaGTGGGCAGTTTCCTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: TKSWNTEEVRRQDSILHRWILAL*WAVSLA Trigger: AGCCAAGGAAACTGCCCACAACAAGGCCAAGATCCA...TCTGTGTAAGATACTGTCTTGTCTCCTGACTTCCTCAGTATTCCAGGACTTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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| CDS TCA 72 bp | TTTGTTTGTGCTAGCTCCTGGCATGGCTCCGCACACTaGGGAAGGCACTGGTCTTGGCTTGGAGGTAGACAT | + |
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Preference number: 6 (lower is better) Translates to: FVCASSWHGSAH*GRHWSWLGGRH Trigger: ATGTCTACCTCCAAGCCAAGACCAGTGCCTTCCTCAGTGTGCGGAGCCATGCCAGGAGCTAGCACAAACAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070284.4 |
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