Pregenerated sensors for PRR7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034686Ensembl transcript IDs: ENSMUST00000046533.9
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCGCCCGTGGGGCTCGGGACGCCGGGGAGGCGGCTGCTCCTaGTTCTCCGCGCTGTCGCGG | + |
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Preference number: 4 (lower is better) Translates to: LKSLAVRLGVRPWGSGRRGGGCS*FSALSR Trigger: CCGCGACAGCGCGGAGAAGCAGGAGCAGCCGCCTCC...CCGGCGTCCCGAGCCCCACGGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS-3UTR TCA 90 bp | CCAAGGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCGCCCGTGGGGGGGGCTCTCGGCTGCTaGGCTCTGAGTCGGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PREAFKKPRSQARSSPVGGALGC*ALSRSS Trigger: GCTGGACCGACTCAGAGCTCAGCAGCCGAGAGCCCC...CCCCACGGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTTCCCTTGG 62% GC, longest homopolymer 8 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS-3UTR GCA 90 bp | CCAAGGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCGCCCGTGGGGCGGCTGCGTTCCGCCTaGAGACAGAGGGCAGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PREAFKKPRSQARSSPVGRLRSA*RQRAGQ Trigger: CTGCCCTGCCCTCTGTCTGCAGGCGGAACGCAGCCG...CCCCACGGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTTCCCTTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS-3UTR TCA 90 bp | CTCCCTGCAGTCCAAGGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCCTCCTGGCGCCGTTTaGGGCGGCGGCGCAGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LPAVQGKHLKSLAVRLGVPPGAV*GGGAGS Trigger: GCTTCCTGCGCCGCCGCCTCAAACGGCGCCAGGAGG...AACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTTCCCTTGGACTGCAGGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS-3UTR CCA 90 bp | CCAAGGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCGCCCGTGGGGCTGAGTCGGTCCAGCTaGGGAAAACCCGGCGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: PREAFKKPRSQARSSPVGLSRSS*GKPGGC Trigger: GCAGCCGCCGGGTTTTCCCCAGCTGGACCGACTCAG...CCCCACGGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTTCCCTTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS-3UTR TCA 90 bp | GGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCGCCCGTGGGGCTCGAGCCGGCGAAGCAAGTaGGGAACGTGTAGGTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: GKHLKSLAVRLGVRPWGSSRRSK*GTCRCP Trigger: AGGGCACCTACACGTTCCTCACTTGCTTCGCCGGCT...CGAGCCCCACGGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS-3UTR CCA 90 bp | AAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCGCCCGTGGGGCTCGGGATCCCGAACAAGGGGATaGAGACCGGCAGACGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: KHLKSLAVRLGVRPWGSGSRTRG*RPADAK Trigger: CTTGGCGTCTGCCGGTCTCCATCCCCTTGTTCGGGA...TCCCGAGCCCCACGGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS-3UTR CCA 90 bp | CTCCCTGCAGTCCAAGGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCTTAGTCGCTCCTCCTaGCGCCGTTTGAGGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: LPAVQGKHLKSLAVRLGVLSRSS*RRLRRR Trigger: CCGCCGCCTCAAACGGCGCCAGGAGGAGCGACTAAG...AACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTTCCCTTGGACTGCAGGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS-3UTR TCA 90 bp | CTCCCTGCAGTCCAAGGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTGGCTCAGAAAGGGCGTaGCGATCTTGCGGTAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: LPAVQGKHLKSLAVRLGVGSERA*RSCGRG Trigger: GCCTCTACCGCAAGATCGTCACGCCCTTTCTGAGCC...AACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTTCCCTTGGACTGCAGGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS GCA 90 bp | GGCGCCGGCCCGTGGTGCAGCAGCGGGTGCACGTGCACGTGCGAGTaGGCGTGCACAGGCGCCTCCAGACGGCTGCGGTGCGGTGGCGGC | + |
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Preference number: 5 (lower is better) Translates to: GAGPWCSSGCTCTCE*ACTGASRRLRCGGG Trigger: GCCGCCACCGCACCGCAGCCGTCTGGAGGCGCCTGTGCACGCGCACTCGCACGTGCACGTGCACCCGCTGCTGCACCACGGGCCGGCGCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS GCA 90 bp | TGCGGGTGCGCGTGCGGCGGCGCCGGCCCGTGGTGCAGCAGCGGGTaGACGTGCACGTGCGAGTGCGCGTGCACAGGCGCCTCCAGACGG | + |
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Preference number: 5 (lower is better) Translates to: CGCACGGAGPWCSSG*TCTCECACTGASRR Trigger: CCGTCTGGAGGCGCCTGTGCACGCGCACTCGCACGTGCACGTGCACCCGCTGCTGCACCACGGGCCGGCGCCGCCGCACGCGCACCCGCA 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS CCA 90 bp | CGGATAGCTCCAGGGCCGGGGCGGCACGGCGAGGTGCGGCGGCGGTaGGTGCGGCAGTGCGTGATGGTGTGGGTGCGGGTGCGCGTGCGG | + |
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Preference number: 5 (lower is better) Translates to: RIAPGPGRHGEVRRR*VRQCVMVWVRVRVR Trigger: CCGCACGCGCACCCGCACCCACACCATCACGCACTGCCGCACCCACCGCCGCCGCACCTCGCCGTGCCGCCCCGGCCCTGGAGCTATCCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS GCA 90 bp | TGCGGCGGCGCCGGCCCGTGGTGCAGCAGCGGGTGCACGTGCACGTaGGAGTGCGCGTGCACAGGCGCCTCCAGACGGCTGCGGTGCGGT | + |
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Preference number: 5 (lower is better) Translates to: CGGAGPWCSSGCTCT*ECACTGASRRLRCG Trigger: ACCGCACCGCAGCCGTCTGGAGGCGCCTGTGCACGCGCACTCGCACGTGCACGTGCACCCGCTGCTGCACCACGGGCCGGCGCCGCCGCA 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS GCA 90 bp | CTGCCCTCAAGCTCGAGGGGCTCCAGCTCCAGGGCACGCAAGTTCTaGTCCCTTAGTCGCTCCTCCTGGCGCCGTTTGAGGCGGCGGCGC | + |
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Preference number: 5 (lower is better) Translates to: LPSSSRGSSSRARKF*SLSRSSWRRLRRRR Trigger: GCGCCGCCGCCTCAAACGGCGCCAGGAGGAGCGACTAAGGGAGCAGAACTTGCGTGCCCTGGAGCTGGAGCCCCTCGAGCTTGAGGGCAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS GCA 90 bp | GTCCTCCCGAACAAGGGGATGGAGACCGGCAGACGCCAAGCTCCGTaGTCCAGGGGCTCTCGGCTGCTGAGCTCTGAGTCGGTCCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: VLPNKGMETGRRQAP*SRGSRLLSSESVQL Trigger: CAGCTGGACCGACTCAGAGCTCAGCAGCCGAGAGCCCCTGGAGCACGGAGCTTGGCGTCTGCCGGTCTCCATCCCCTTGTTCGGGAGGAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS CCA 90 bp | TCCAGCTCCAGGGCACGCAAGTTCTGCTCCCTTAGTCGCTCCTCCTaGCGCCGTTTGAGGCGGCGGCGCAGGAAGCTGCAGAAGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: SSSRARKFCSLSRSS*RRLRRRRRKLQKQQ Trigger: CTGCTGCTTCTGCAGCTTCCTGCGCCGCCGCCTCAAACGGCGCCAGGAGGAGCGACTAAGGGAGCAGAACTTGCGTGCCCTGGAGCTGGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS-3UTR CAA 90 bp | TGCAGTCCAAGGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCGCCCTCCTCCTGGCGCCGTTaGAGGCGGCGGCGCAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: CSPREAFKKPRSQARSSPSSWRR*RRRRRK Trigger: CTTCCTGCGCCGCCGCCTCAAACGGCGCCAGGAGGA...GGGCGAACTCCTAGCCTGACTGCGAGGCTTTTTAAATGCTTCCCTTGGACTGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS GCA 72 bp | CCGTGGTGCAGCAGCGGGTGCACGTGCACGTGCGAGTaGGCGTGCACAGGCGCCTCCAGACGGCTGCGGTGC | + |
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Preference number: 6 (lower is better) Translates to: PWCSSGCTCTCE*ACTGASRRLRC Trigger: GCACCGCAGCCGTCTGGAGGCGCCTGTGCACGCGCACTCGCACGTGCACGTGCACCCGCTGCTGCACCACGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS CCA 72 bp | AGGGCACGCAAGTTCTGCTCCCTTAGTCGCTCCTCCTaGCGCCGTTTGAGGCGGCGGCGCAGGAAGCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: RARKFCSLSRSS*RRLRRRRRKLQ Trigger: CTGCAGCTTCCTGCGCCGCCGCCTCAAACGGCGCCAGGAGGAGCGACTAAGGGAGCAGAACTTGCGTGCCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS GCA 72 bp | AGCTCGAGGGGCTCCAGCTCCAGGGCACGCAAGTTCTaGTCCCTTAGTCGCTCCTCCTGGCGCCGTTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: SSRGSSSRARKF*SLSRSSWRRLR Trigger: CCTCAAACGGCGCCAGGAGGAGCGACTAAGGGAGCAGAACTTGCGTGCCCTGGAGCTGGAGCCCCTCGAGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS GCA 72 bp | AACAAGGGGATGGAGACCGGCAGACGCCAAGCTCCGTaGTCCAGGGGCTCTCGGCTGCTGAGCTCTGAGTCG | + |
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Preference number: 6 (lower is better) Translates to: NKGMETGRRQAP*SRGSRLLSSES Trigger: CGACTCAGAGCTCAGCAGCCGAGAGCCCCTGGAGCACGGAGCTTGGCGTCTGCCGGTCTCCATCCCCTTGTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS TCA 72 bp | AGTTCTGCTCCCTTAGTCGCTCCTCCTGGCGCCGTTTaGGGCGGCGGCGCAGGAAGCTGCAGAAGCAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: SSAPLVAPPGAV*GGGAGSCRSSR Trigger: TCTGCTGCTTCTGCAGCTTCCTGCGCCGCCGCCTCAAACGGCGCCAGGAGGAGCGACTAAGGGAGCAGAACT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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| CDS CAA 72 bp | AAGTTCTGCTCCCTTAGTCGCTCCTCCTGGCGCCGTTaGAGGCGGCGGCGCAGGAAGCTGCAGAAGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: KFCSLSRSSWRR*RRRRRKLQKQQ Trigger: CTGCTGCTTCTGCAGCTTCCTGCGCCGCCGCCTCAAACGGCGCCAGGAGGAGCGACTAAGGGAGCAGAACTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046533.9 |
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