Pregenerated sensors for PRR33 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043795Ensembl transcript IDs: ENSMUST00000054910.9, ENSMUST00000238347.2
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTGGATGCTCGGGAGGCAGGGGGCTGCAGGCCCACCACAGGGGCTaGCACCTCTGGTTGCATTGGCTCCAGGTTCGGCTTCAGTTCTGG | + |
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Preference number: 1 (lower is better) Translates to: PGCSGGRGLQAHHRG*HLWLHWLQVRLQFW Trigger: CCAGAACTGAAGCCGAACCTGGAGCCAATGCAACCAGAGGTGCCAGCCCCTGTGGTGGGCCTGCAGCCCCCTGCCTCCCGAGCATCCAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 90 bp | GAGGCAGGGGGCTGCAGGCCCACCACAGGGGCTGGCACCTCTGGTTaGATTGGCTCCAGGTTCGGCTTCAGTTCTGGAAACGCAGGCTCC | + |
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Preference number: 1 (lower is better) Translates to: EAGGCRPTTGAGTSG*IGSRFGFSSGNAGS Trigger: GGAGCCTGCGTTTCCAGAACTGAAGCCGAACCTGGAGCCAATGCAACCAGAGGTGCCAGCCCCTGTGGTGGGCCTGCAGCCCCCTGCCTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 90 bp | TACAGCACTGCATCCCACATCCTGGATGCTCGGGAGGCAGGGGGCTaGAGGCCCACCACAGGGGCTGGCACCTCTGGTTGCATTGGCTCC | + |
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Preference number: 1 (lower is better) Translates to: YSTASHILDAREAGG*RPTTGAGTSGCIGS Trigger: GGAGCCAATGCAACCAGAGGTGCCAGCCCCTGTGGTGGGCCTGCAGCCCCCTGCCTCCCGAGCATCCAGGATGTGGGATGCAGTGCTGTA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 90 bp | CCACTACGGGAGGGCTTAGGTGCAACTTTGGGAACAGGGTATGGGTaGAGGTCTGAGGGGCCTGAGGCTCCGGGGAGGCTAGAGACATTC | + |
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Preference number: 1 (lower is better) Translates to: PLREGLGATLGTGYG*RSEGPEAPGRLETF Trigger: GAATGTCTCTAGCCTCCCCGGAGCCTCAGGCCCCTCAGACCTCCACCCATACCCTGTTCCCAAAGTTGCACCTAAGCCCTCCCGTAGTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 90 bp | GCCAGAGGATGGCCCCTATCTCCAGGCCCCACAGGGTGGTCTCTATaGGACTCAGCCAGTGACATGCGGTACAGCACTGCATCCCACATC | + |
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Preference number: 1 (lower is better) Translates to: ARGWPLSPGPTGWSL*DSASDMRYSTASHI Trigger: GATGTGGGATGCAGTGCTGTACCGCATGTCACTGGCTGAGTCCCATAGAGACCACCCTGTGGGGCCTGGAGATAGGGGCCATCCTCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 90 bp | GTCCGGTTGAAATTCTTGGGCCGAGAATGCAGCTCCAGAATGGGGTaGAAGGTAGGAGGGGGCCGGACCACCTCCTGTAGCTTCCGGGCA | + |
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Preference number: 1 (lower is better) Translates to: VRLKFLGRECSSRMG*KVGGGRTTSCSFRA Trigger: TGCCCGGAAGCTACAGGAGGTGGTCCGGCCCCCTCCTACCTTCCACCCCATTCTGGAGCTGCATTCTCGGCCCAAGAATTTCAACCGGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 90 bp | CCTATCTCCAGGCCCCACAGGGTGGTCTCTATGGGACTCAGCCAGTaGCATGCGGTACAGCACTGCATCCCACATCCTGGATGCTCGGGA | + |
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Preference number: 1 (lower is better) Translates to: PISRPHRVVSMGLSQ*HAVQHCIPHPGCSG Trigger: TCCCGAGCATCCAGGATGTGGGATGCAGTGCTGTACCGCATGTCACTGGCTGAGTCCCATAGAGACCACCCTGTGGGGCCTGGAGATAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 90 bp | GGGCTCCTCGGGCCTAGGACTAACTGTCTGTACCCCAGCAGGCAGTaGCCGAATATGAGCCACTGGGATGAGAGGCTGGGTGCTAGAAGT | + |
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Preference number: 1 (lower is better) Translates to: GLLGPRTNCLYPSRQ*PNMSHWDERLGARS Trigger: ACTTCTAGCACCCAGCCTCTCATCCCAGTGGCTCATATTCGGCCACTGCCTGCTGGGGTACAGACAGTTAGTCCTAGGCCCGAGGAGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 90 bp | AGGGGCTATGGGCACCACCACCCTAGCGCCACTTTCTCTGTTCACTaGGGCCTGAAAGCTAGGTGGTGGCCTTGTTATAGAGGGCTCCTC | + |
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Preference number: 1 (lower is better) Translates to: RGYGHHHPSATFSVH*GLKARWWPCYRGLL Trigger: GAGGAGCCCTCTATAACAAGGCCACCACCTAGCTTTCAGGCCTCAGTGAACAGAGAAAGTGGCGCTAGGGTGGTGGTGCCCATAGCCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 90 bp | GGCTTCAGTTCTGGAAACGCAGGCTCCTTTGCCTCCTCCATCAGCTaGTTCTTTAGCCGTGTCCAGCCACTACGGGAGGGCTTAGGTGCA | + |
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Preference number: 1 (lower is better) Translates to: GFSSGNAGSFASSIS*FFSRVQPLREGLGA Trigger: TGCACCTAAGCCCTCCCGTAGTGGCTGGACACGGCTAAAGAAGCAGCTGATGGAGGAGGCAAAGGAGCCTGCGTTTCCAGAACTGAAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 90 bp | CACCCTGCTGACCCATCTTGTTCACTTGTGAGGGCTAAGTCTCTCTaGTCTGTATGCTCAGCCACAGCCAGTCTCTGTCCACCAGAGTCC | + |
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Preference number: 1 (lower is better) Translates to: HPADPSCSLVRAKSL*SVCSATASLCPPES Trigger: GGACTCTGGTGGACAGAGACTGGCTGTGGCTGAGCATACAGAGCAGAGAGACTTAGCCCTCACAAGTGAACAAGATGGGTCAGCAGGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 90 bp | TCTAGACCTGAAGCCAGGTTCCCACCATCCATGAACATTCTCCAGTaGACACTCTCCACAACCCCAAACCACCTCCAGCCACATGCTCCC | + |
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Preference number: 1 (lower is better) Translates to: SRPEARFPPSMNILQ*TLSTTPNHLQPHAP Trigger: GGGAGCATGTGGCTGGAGGTGGTTTGGGGTTGTGGAGAGTGTGCACTGGAGAATGTTCATGGATGGTGGGAACCTGGCTTCAGGTCTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 90 bp | GTCCACCAGAGTCCAGAGTCCCAGAGGCCACTCTGGTTTTGTTACTaGAGCCTCCAACCTTCTGCTGTCCGGTTGAAATTCTTGGGCCGA | + |
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Preference number: 1 (lower is better) Translates to: VHQSPESQRPLWFCY*SLQPSAVRLKFLGR Trigger: TCGGCCCAAGAATTTCAACCGGACAGCAGAAGGTTGGAGGCTTCAGTAACAAAACCAGAGTGGCCTCTGGGACTCTGGACTCTGGTGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 90 bp | GACCCATCTTGTTCACTTGTGAGGGCTAAGTCTCTCTGCTCTGTATaGTCAGCCACAGCCAGTCTCTGTCCACCAGAGTCCAGAGTCCCA | + |
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Preference number: 1 (lower is better) Translates to: DPSCSLVRAKSLCSV*SATASLCPPESRVP Trigger: TGGGACTCTGGACTCTGGTGGACAGAGACTGGCTGTGGCTGAGCATACAGAGCAGAGAGACTTAGCCCTCACAAGTGAACAAGATGGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 90 bp | CCAGGTGGGGCTACCAGCTCAATCCTTGCTGAGTCTTGTTACACCTaGCTCTTCTGGATCACTCCTCTCACAGCTGATGAGAGTCTGGCA | + |
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Preference number: 1 (lower is better) Translates to: PGGATSSILAESCYT*LFWITPLTADESLA Trigger: TGCCAGACTCTCATCAGCTGTGAGAGGAGTGATCCAGAAGAGCCAGGTGTAACAAGACTCAGCAAGGATTGAGCTGGTAGCCCCACCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 90 bp | CAGCTACCAAGGTCATACACCCTGCTGACCCATCTTGTTCACTTGTaGGGGCTAAGTCTCTCTGCTCTGTATGCTCAGCCACAGCCAGTC | + |
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Preference number: 1 (lower is better) Translates to: QLPRSYTLLTHLVHL*GLSLSALYAQPQPV Trigger: GACTGGCTGTGGCTGAGCATACAGAGCAGAGAGACTTAGCCCTCACAAGTGAACAAGATGGGTCAGCAGGGTGTATGACCTTGGTAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 90 bp | ACTAACTGTCTGTACCCCAGCAGGCAGTGGCCGAATATGAGCCACTaGGATGAGAGGCTGGGTGCTAGAAGTACACAGGCTTTTATCTCC | + |
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Preference number: 1 (lower is better) Translates to: TNCLYPSRQWPNMSH*DERLGARSTQAFIS Trigger: GGAGATAAAAGCCTGTGTACTTCTAGCACCCAGCCTCTCATCCCAGTGGCTCATATTCGGCCACTGCCTGCTGGGGTACAGACAGTTAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 90 bp | GTCCCAGAGGCCACTCTGGTTTTGTTACTGAAGCCTCCAACCTTCTaGTGTCCGGTTGAAATTCTTGGGCCGAGAATGCAGCTCCAGAAT | + |
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Preference number: 1 (lower is better) Translates to: VPEATLVLLLKPPTF*CPVEILGPRMQLQN Trigger: ATTCTGGAGCTGCATTCTCGGCCCAAGAATTTCAACCGGACAGCAGAAGGTTGGAGGCTTCAGTAACAAAACCAGAGTGGCCTCTGGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 90 bp | CCACCTCCAGCCACATGCTCCCAGCTTCATTCACTTCTCTCACTTTaGCATATCTCTTCCCACCAACTGATCTGTGTCTGTCCGATAGGC | + |
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Preference number: 1 (lower is better) Translates to: PPPATCSQLHSLLSL*HISSHQLICVCPIG Trigger: GCCTATCGGACAGACACAGATCAGTTGGTGGGAAGAGATATGGCAAAGTGAGAGAAGTGAATGAAGCTGGGAGCATGTGGCTGGAGGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 90 bp | TCAGAAGTCCCAATATGTGAGGATGGTGACAGCCGGATATGTACTTaGGTGATGTGGGTACCACCCGCTGTAGGAGCAGATACATGGGCA | + |
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Preference number: 1 (lower is better) Translates to: SEVPICEDGDSRICT*VMWVPPAVGADTWA Trigger: TGCCCATGTATCTGCTCCTACAGCGGGTGGTACCCACATCACTCAAGTACATATCCGGCTGTCACCATCCTCACATATTGGGACTTCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 90 bp | ACACCTGGCTCTTCTGGATCACTCCTCTCACAGCTGATGAGAGTCTaGCAGATCTTAGGAATTTCTCTAATCCTGGATCCTGCCTCTCTG | + |
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Preference number: 1 (lower is better) Translates to: TPGSSGSLLSQLMRV*QILGISLILDPASL Trigger: CAGAGAGGCAGGATCCAGGATTAGAGAAATTCCTAAGATCTGCCAGACTCTCATCAGCTGTGAGAGGAGTGATCCAGAAGAGCCAGGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 90 bp | TGGAAGGTAGGAGGGGGCCGGACCACCTCCTGTAGCTTCCGGGCATaGAAACGAGGTCGGCACAGAAATGGCAGGCGGTTGAGGCAGGCC | + |
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Preference number: 2 (lower is better) Translates to: WKVGGGRTTSCSFRA*KRGRHRNGRRLRQA Trigger: GGCCTGCCTCAACCGCCTGCCATTTCTGTGCCGACCTCGTTTCAATGCCCGGAAGCTACAGGAGGTGGTCCGGCCCCCTCCTACCTTCCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR TCA 90 bp | AGGCCCACCACAGGGGCTGGCACCTCTGGTTGCATTGGCTCCAGGTTCGGCTTCCTGTTCACTGAGGCCTaGAAGCTAGGTGGTGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: RPTTGAGTSGCIGSRFGFLFTEA*KLGGGL Trigger: AAGGCCACCACCTAGCTTTCAGGCCTCAGTGAACAG...GAAGCCGAACCTGGAGCCAATGCAACCAGAGGTGCCAGCCCCTGTGGTGGGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CCA 90 bp | CGGTTGAGGCAGGCCAGAGGATGGCCCCTATCTCCAGGCCCCACAGGGTGGTCTGGCCTGAAAGCTAGGTaGTGGCCTTGTTATAGAGGG | + |
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Preference number: 2 (lower is better) Translates to: RLRQARGWPLSPGPTGWSGLKAR*WPCYRG Trigger: CCCTCTATAACAAGGCCACCACCTAGCTTTCAGGCC...AGACCACCCTGTGGGGCCTGGAGATAGGGGCCATCCTCTGGCCTGCCTCAACCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 90 bp | TGGGCTCCATGGCAGGCCTGGCTGTGGGCGGCTCCTCTACATGTTTaGCTTCAGGAGCTGCAGGAGGTGGACTATAAGGTGAGGGTCCAG | + |
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Preference number: 2 (lower is better) Translates to: WAPWQAWLWAAPLHV*LQELQEVDYKVRVQ Trigger: CTGGACCCTCACCTTATAGTCCACCTCCTGCAGCTCCTGAAGCAAAACATGTAGAGGAGCCGCCCACAGCCAGGCCTGCCATGGAGCCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 90 bp | TTCTTTAGCCGTGTCCAGCCACTACGGGAGGGCTTAGGTGCAACTTaGGGAACAGGGTATGGGTGGAGGTCTGAGGGGCCTGAGGCTCCG | + |
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Preference number: 2 (lower is better) Translates to: FFSRVQPLREGLGAT*GTGYGWRSEGPEAP Trigger: CGGAGCCTCAGGCCCCTCAGACCTCCACCCATACCCTGTTCCCAAAGTTGCACCTAAGCCCTCCCGTAGTGGCTGGACACGGCTAAAGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CCA 90 bp | CGGTTGAGGCAGGCCAGAGGATGGCCCCTATCTCCAGGCCCCACAGGGTGGTCTCTGAAAGCTAGGTGGTaGCCTTGTTATAGAGGGCTC | + |
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Preference number: 2 (lower is better) Translates to: RLRQARGWPLSPGPTGWSLKARW*PCYRGL Trigger: GAGCCCTCTATAACAAGGCCACCACCTAGCTTTCAG...AGACCACCCTGTGGGGCCTGGAGATAGGGGCCATCCTCTGGCCTGCCTCAACCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CCA 90 bp | ACCCCAAACCACCTCCAGCCACATGCTCCCAGCTTCATTCACTTCTCTCACTTTGCTCCATGGCAGGCCTaGCTGTGGGCGGCTCCTCTA | + |
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Preference number: 2 (lower is better) Translates to: TPNHLQPHAPSFIHFSHFAPWQA*LWAAPL Trigger: TAGAGGAGCCGCCCACAGCCAGGCCTGCCATGGAGC...AAAGTGAGAGAAGTGAATGAAGCTGGGAGCATGTGGCTGGAGGTGGTTTGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CCA 90 bp | CTTCCGGGCATTGAAACGAGGTCGGCACAGAAATGGCAGGCGGTTGAGGCAGGCACAGGGTGGTCTCTATaGGACTCAGCCAGTGACATG | + |
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Preference number: 2 (lower is better) Translates to: LPGIETRSAQKWQAVEAGTGWSL*DSASDM Trigger: CATGTCACTGGCTGAGTCCCATAGAGACCACCCTGT...GCCTGCCTCAACCGCCTGCCATTTCTGTGCCGACCTCGTTTCAATGCCCGGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 90 bp | GCATTGGCTCCAGGTTCGGCTTCAGTTCTGGAAACGCAGGCTCCTTaGCCTCCTCCATCAGCTGCTTCTTTAGCCGTGTCCAGCCACTAC | + |
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Preference number: 2 (lower is better) Translates to: ALAPGSASVLETQAP*PPPSAASLAVSSHY Trigger: GTAGTGGCTGGACACGGCTAAAGAAGCAGCTGATGGAGGAGGCAAAGGAGCCTGCGTTTCCAGAACTGAAGCCGAACCTGGAGCCAATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CCA 90 bp | CATTTATTGCATGGCTCCATCTACAACTGTAATACCCATTACATCCCAGGTGGGCATTCCTGGGCTCCATaGCAGGCCTGGCTGTGGGCG | + |
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Preference number: 2 (lower is better) Translates to: HLLHGSIYNCNTHYIPGGHSWAP*QAWLWA Trigger: CGCCCACAGCCAGGCCTGCCATGGAGCCCAGGAATG...CCCACCTGGGATGTAATGGGTATTACAGTTGTAGATGGAGCCATGCAATAAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CCA 90 bp | GCAGTCTTAATCAGTAAGCCCTTGCTGTCAGGAAACCAGAAGGGATATCTACAGGGAACAGGGTATGGGTaGAGGTCTGAGGGGCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: AVLISKPLLSGNQKGYLQGTGYG*RSEGPE Trigger: CTCAGGCCCCTCAGACCTCCACCCATACCCTGTTCC...CTGTAGATATCCCTTCTGGTTTCCTGACAGCAAGGGCTTACTGATTAAGACTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 90 bp | ACCACCTCCAGCCACATGCTCCCAGCTTCATTCACTTCTCTCACTTaGCCATATCTCTTCCCACCAACTGATCTGTGTCTGTCCGATAGG | + |
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Preference number: 2 (lower is better) Translates to: TTSSHMLPASFTSLT*PYLFPPTDLCLSDR Trigger: CCTATCGGACAGACACAGATCAGTTGGTGGGAAGAGATATGGCAAAGTGAGAGAAGTGAATGAAGCTGGGAGCATGTGGCTGGAGGTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR TCA 90 bp | ACCCCAAACCACCTCCAGCCACATGCTCCCAGCTTCATTCACTTCTCTCACTTTACTTTCTCTGTTCACTaGGGCCTGAAAGCTAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: TPNHLQPHAPSFIHFSHFTFSVH*GLKARW Trigger: CCACCTAGCTTTCAGGCCTCAGTGAACAGAGAAAGT...AAAGTGAGAGAAGTGAATGAAGCTGGGAGCATGTGGCTGGAGGTGGTTTGGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR GCA 90 bp | AGGGATATCTACAGGACCACAGAAAATTCTTTCTCAATTGCCCAGTCCTATGTAGCTGGCACCTCTGGTTaGATTGGCTCCAGGTTCGGC | + |
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Preference number: 2 (lower is better) Translates to: RDIYRTTENSFSIAQSYVAGTSG*IGSRFG Trigger: GCCGAACCTGGAGCCAATGCAACCAGAGGTGCCAGC...TACATAGGACTGGGCAATTGAGAAAGAATTTTCTGTGGTCCTGTAGATATCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CCA 90 bp | GATATCTACAGGACCACAGAAAATTCTTTCTCAATTGCCCAGTCCTATGTACCTTGGGCAAAGCCACTGTaGGGGCAGGCAGTTTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: DIYRTTENSFSIAQSYVPWAKPL*GQAVSG Trigger: CCCAGAAACTGCCTGCCCCCACAGTGGCTTTGCCCA...AGGTACATAGGACTGGGCAATTGAGAAAGAATTTTCTGTGGTCCTGTAGATATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR GCA 90 bp | TTGCATGGCTCCATCTACAACTGTAATACCCATTACATCCCAGGTGGGGCTACCAAGCCTCCAACCTTCTaGTGTCCGGTTGAAATTCTT | + |
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Preference number: 2 (lower is better) Translates to: LHGSIYNCNTHYIPGGATKPPTF*CPVEIL Trigger: AAGAATTTCAACCGGACAGCAGAAGGTTGGAGGCTT...GGTAGCCCCACCTGGGATGTAATGGGTATTACAGTTGTAGATGGAGCCATGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR GCA 90 bp | CATTTATTGCATGGCTCCATCTACAACTGTAATACCCATTACATCCCAGGTGGGCCACCTCCAGCCACATaGTCCCAGCTTCATTCACTT | + |
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Preference number: 2 (lower is better) Translates to: HLLHGSIYNCNTHYIPGGPPPAT*SQLHSL Trigger: AAGTGAATGAAGCTGGGAGCATGTGGCTGGAGGTGG...CCCACCTGGGATGTAATGGGTATTACAGTTGTAGATGGAGCCATGCAATAAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CCA 90 bp | GATATCTACAGGACCACAGAAAATTCTTTCTCAATTGCCCAGTCCTATGTACCTGTAGGAGCAGATACATaGGCAAAGCCACTGTGGGGG | + |
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Preference number: 2 (lower is better) Translates to: DIYRTTENSFSIAQSYVPVGADT*AKPLWG Trigger: CCCCCACAGTGGCTTTGCCCATGTATCTGCTCCTAC...AGGTACATAGGACTGGGCAATTGAGAAAGAATTTTCTGTGGTCCTGTAGATATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR TCA 90 bp | TCACAGCTGATGAGAGTCTGGCAGATCTTAGGAATTTCTCTAATCCTGGATCCTCATCTTGTTCACTTGTaGGGGCTAAGTCTCTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: SQLMRVWQILGISLILDPHLVHL*GLSLSA Trigger: AGCAGAGAGACTTAGCCCTCACAAGTGAACAAGATG...AGGATCCAGGATTAGAGAAATTCCTAAGATCTGCCAGACTCTCATCAGCTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR GCA 90 bp | TTGCATGGCTCCATCTACAACTGTAATACCCATTACATCCCAGGTGGGGCTACCAAATTCTTTCTCAATTaGCCAGTCCTATGTACCTCT | + |
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Preference number: 2 (lower is better) Translates to: LHGSIYNCNTHYIPGGATKFFLN*PVLCTS Trigger: AGAGGTACATAGGACTGGGCAATTGAGAAAGAATTT...GGTAGCCCCACCTGGGATGTAATGGGTATTACAGTTGTAGATGGAGCCATGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 90 bp | TTTTCACTACACCATGCATTTGGTGCAGTCTTAATCAGTAAGCCCTaGCTGTCAGGAAACCAGAAGGGATATCTACAGGACCACAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: FSLHHAFGAVLISKP*LSGNQKGYLQDHRK Trigger: TTTTCTGTGGTCCTGTAGATATCCCTTCTGGTTTCCTGACAGCAAGGGCTTACTGATTAAGACTGCACCAAATGCATGGTGTAGTGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 72 bp | AGGGGGCTGCAGGCCCACCACAGGGGCTGGCACCTCTaGTTGCATTGGCTCCAGGTTCGGCTTCAGTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: RGLQAHHRGWHL*LHWLQVRLQFW Trigger: CCAGAACTGAAGCCGAACCTGGAGCCAATGCAACCAGAGGTGCCAGCCCCTGTGGTGGGCCTGCAGCCCCCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 72 bp | GGCTGCAGGCCCACCACAGGGGCTGGCACCTCTGGTTaGATTGGCTCCAGGTTCGGCTTCAGTTCTGGAAAC | + |
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Preference number: 3 (lower is better) Translates to: GCRPTTGAGTSG*IGSRFGFSSGN Trigger: GTTTCCAGAACTGAAGCCGAACCTGGAGCCAATGCAACCAGAGGTGCCAGCCCCTGTGGTGGGCCTGCAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 72 bp | GCCAGAGGATGGCCCCTATCTCCAGGCCCCACAGGGTaGTCTCTATGGGACTCAGCCAGTGACATGCGGTAC | + |
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Preference number: 3 (lower is better) Translates to: ARGWPLSPGPTG*SLWDSASDMRY Trigger: GTACCGCATGTCACTGGCTGAGTCCCATAGAGACCACCCTGTGGGGCCTGGAGATAGGGGCCATCCTCTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 72 bp | CCCGCTGTAGGAGCAGATACATGGGCAAAGCCACTGTaGGGGCAGGCAGTTTCTGGGGCTGGAGCGTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: PAVGADTWAKPL*GQAVSGAGASR Trigger: TCTTGACGCTCCAGCCCCAGAAACTGCCTGCCCCCACAGTGGCTTTGCCCATGTATCTGCTCCTACAGCGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 72 bp | AGGCCCCACAGGGTGGTCTCTATGGGACTCAGCCAGTaGCATGCGGTACAGCACTGCATCCCACATCCTGGA | + |
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Preference number: 3 (lower is better) Translates to: RPHRVVSMGLSQ*HAVQHCIPHPG Trigger: TCCAGGATGTGGGATGCAGTGCTGTACCGCATGTCACTGGCTGAGTCCCATAGAGACCACCCTGTGGGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 72 bp | AAATTCTTGGGCCGAGAATGCAGCTCCAGAATGGGGTaGAAGGTAGGAGGGGGCCGGACCACCTCCTGTAGC | + |
|
Preference number: 3 (lower is better) Translates to: KFLGRECSSRMG*KVGGGRTTSCS Trigger: GCTACAGGAGGTGGTCCGGCCCCCTCCTACCTTCCACCCCATTCTGGAGCTGCATTCTCGGCCCAAGAATTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 72 bp | CCTTCTGCTGTCCGGTTGAAATTCTTGGGCCGAGAATaGAGCTCCAGAATGGGGTGGAAGGTAGGAGGGGGC | + |
|
Preference number: 3 (lower is better) Translates to: PSAVRLKFLGRE*SSRMGWKVGGG Trigger: GCCCCCTCCTACCTTCCACCCCATTCTGGAGCTGCATTCTCGGCCCAAGAATTTCAACCGGACAGCAGAAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 72 bp | CTCTGGTTGCATTGGCTCCAGGTTCGGCTTCAGTTCTaGAAACGCAGGCTCCTTTGCCTCCTCCATCAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: LWLHWLQVRLQF*KRRLLCLLHQL Trigger: CAGCTGATGGAGGAGGCAAAGGAGCCTGCGTTTCCAGAACTGAAGCCGAACCTGGAGCCAATGCAACCAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 72 bp | GGGCACCACCACCCTAGCGCCACTTTCTCTGTTCACTaGGGCCTGAAAGCTAGGTGGTGGCCTTGTTATAGA | + |
|
Preference number: 3 (lower is better) Translates to: GHHHPSATFSVH*GLKARWWPCYR Trigger: TCTATAACAAGGCCACCACCTAGCTTTCAGGCCTCAGTGAACAGAGAAAGTGGCGCTAGGGTGGTGGTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 72 bp | GAAGCCAGGTTCCCACCATCCATGAACATTCTCCAGTaGACACTCTCCACAACCCCAAACCACCTCCAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: EARFPPSMNILQ*TLSTTPNHLQP Trigger: TGGCTGGAGGTGGTTTGGGGTTGTGGAGAGTGTGCACTGGAGAATGTTCATGGATGGTGGGAACCTGGCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CAA 90 bp | AGCTGCTTCTTTAGCCGTGTCCAGCCACTACGGGAGGGCTTAGGTGCAACTTTGCAGCCGGATATGTACTaGAGTGATGTGGGTACCACC | + |
|
Preference number: 3 (lower is better) Translates to: SCFFSRVQPLREGLGATLQPDMY*SDVGTT Trigger: GGTGGTACCCACATCACTCAAGTACATATCCGGCTG...CAAAGTTGCACCTAAGCCCTCCCGTAGTGGCTGGACACGGCTAAAGAAGCAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 72 bp | TGTTCACTTGTGAGGGCTAAGTCTCTCTGCTCTGTATaGTCAGCCACAGCCAGTCTCTGTCCACCAGAGTCC | + |
|
Preference number: 3 (lower is better) Translates to: CSLVRAKSLCSV*SATASLCPPES Trigger: GGACTCTGGTGGACAGAGACTGGCTGTGGCTGAGCATACAGAGCAGAGAGACTTAGCCCTCACAAGTGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR-3UTR CAA 90 bp | CACAACCCCAAACCACCTCCAGCCACATGCTCCCAGCTTCATTCACTTCTCTCAGCTCCTCTACATGTTTaGCTTCAGGAGCTGCAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: HNPKPPPATCSQLHSLLSAPLHV*LQELQE Trigger: CTCCTGCAGCTCCTGAAGCAAAACATGTAGAGGAGC...TGAGAGAAGTGAATGAAGCTGGGAGCATGTGGCTGGAGGTGGTTTGGGGTTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 72 bp | CAGTCTCTAGACCTGAAGCCAGGTTCCCACCATCCATaGACATTCTCCAGTGCACACTCTCCACAACCCCAA | + |
|
Preference number: 3 (lower is better) Translates to: QSLDLKPGSHHP*TFSSAHSPQPQ Trigger: TTGGGGTTGTGGAGAGTGTGCACTGGAGAATGTTCATGGATGGTGGGAACCTGGCTTCAGGTCTAGAGACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 72 bp | TTACATCCCAGGTGGGGCTACCAGCTCAATCCTTGCTaGGTCTTGTTACACCTGGCTCTTCTGGATCACTCC | + |
|
Preference number: 3 (lower is better) Translates to: LHPRWGYQLNPC*VLLHLALLDHS Trigger: GGAGTGATCCAGAAGAGCCAGGTGTAACAAGACTCAGCAAGGATTGAGCTGGTAGCCCCACCTGGGATGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 72 bp | GACCCATCTTGTTCACTTGTGAGGGCTAAGTCTCTCTaGTCTGTATGCTCAGCCACAGCCAGTCTCTGTCCA | + |
|
Preference number: 3 (lower is better) Translates to: DPSCSLVRAKSL*SVCSATASLCP Trigger: TGGACAGAGACTGGCTGTGGCTGAGCATACAGAGCAGAGAGACTTAGCCCTCACAAGTGAACAAGATGGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 72 bp | CCAATATGTGAGGATGGTGACAGCCGGATATGTACTTaGGTGATGTGGGTACCACCCGCTGTAGGAGCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: PICEDGDSRICT*VMWVPPAVGAD Trigger: ATCTGCTCCTACAGCGGGTGGTACCCACATCACTCAAGTACATATCCGGCTGTCACCATCCTCACATATTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 72 bp | AGGTCATACACCCTGCTGACCCATCTTGTTCACTTGTaGGGGCTAAGTCTCTCTGCTCTGTATGCTCAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: RSYTLLTHLVHL*GLSLSALYAQP Trigger: TGGCTGAGCATACAGAGCAGAGAGACTTAGCCCTCACAAGTGAACAAGATGGGTCAGCAGGGTGTATGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 72 bp | GCCACTCTGGTTTTGTTACTGAAGCCTCCAACCTTCTaGTGTCCGGTTGAAATTCTTGGGCCGAGAATGCAG | + |
|
Preference number: 3 (lower is better) Translates to: ATLVLLLKPPTF*CPVEILGPRMQ Trigger: CTGCATTCTCGGCCCAAGAATTTCAACCGGACAGCAGAAGGTTGGAGGCTTCAGTAACAAAACCAGAGTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 72 bp | GCTACCAGCTCAATCCTTGCTGAGTCTTGTTACACCTaGCTCTTCTGGATCACTCCTCTCACAGCTGATGAG | + |
|
Preference number: 3 (lower is better) Translates to: ATSSILAESCYT*LFWITPLTADE Trigger: CTCATCAGCTGTGAGAGGAGTGATCCAGAAGAGCCAGGTGTAACAAGACTCAGCAAGGATTGAGCTGGTAGC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 72 bp | GCCACATGCTCCCAGCTTCATTCACTTCTCTCACTTTaGCATATCTCTTCCCACCAACTGATCTGTGTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: ATCSQLHSLLSL*HISSHQLICVC Trigger: ACAGACACAGATCAGTTGGTGGGAAGAGATATGGCAAAGTGAGAGAAGTGAATGAAGCTGGGAGCATGTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CCA 72 bp | TCTTCTGGATCACTCCTCTCACAGCTGATGAGAGTCTaGCAGATCTTAGGAATTTCTCTAATCCTGGATCCT | + |
|
Preference number: 3 (lower is better) Translates to: SSGSLLSQLMRV*QILGISLILDP Trigger: AGGATCCAGGATTAGAGAAATTCCTAAGATCTGCCAGACTCTCATCAGCTGTGAGAGGAGTGATCCAGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR GCA 72 bp | GGATATCTACAGGACCACAGAAAATTCTTTCTCAATTaGCCAGTCCTATGTACCTCTGAATACTCCTCATCC | + |
|
Preference number: 3 (lower is better) Translates to: GYLQDHRKFFLN*PVLCTSEYSSS Trigger: GGATGAGGAGTATTCAGAGGTACATAGGACTGGGCAATTGAGAAAGAATTTTCTGTGGTCCTGTAGATATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR TCA 72 bp | AAAATTCTTTCTCAATTGCCCAGTCCTATGTACCTCTaGATACTCCTCATCCAAGCCTTCTTTCTCTGGAAC | + |
|
Preference number: 3 (lower is better) Translates to: KILSQLPSPMYL*ILLIQAFFLWN Trigger: GTTCCAGAGAAAGAAGGCTTGGATGAGGAGTATTCAGAGGTACATAGGACTGGGCAATTGAGAAAGAATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| CDS-3UTR CCA 90 bp | ATGGCAGGCCTGGCTGTGGGCGGCTCCTCTACATGTTTTGCTTCAGGAGCTGCAGGAGGGCTCAGGTCTTaGGCCACCTGCTGCCGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: MAGLAVGGSSTCFASGAAGGLRS*ATCCRG Trigger: CCCCCGGCAGCAGGTGGCCCAAGACCTGAGCCCTCC...TGCAGCTCCTGAAGCAAAACATGTAGAGGAGCCGCCCACAGCCAGGCCTGCCAT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 72 bp | GGAGGGGGCCGGACCACCTCCTGTAGCTTCCGGGCATaGAAACGAGGTCGGCACAGAAATGGCAGGCGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: GGGRTTSCSFRA*KRGRHRNGRRL Trigger: CAACCGCCTGCCATTTCTGTGCCGACCTCGTTTCAATGCCCGGAAGCTACAGGAGGTGGTCCGGCCCCCTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 72 bp | CGTGTCCAGCCACTACGGGAGGGCTTAGGTGCAACTTaGGGAACAGGGTATGGGTGGAGGTCTGAGGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: RVQPLREGLGAT*GTGYGWRSEGP Trigger: AGGCCCCTCAGACCTCCACCCATACCCTGTTCCCAAAGTTGCACCTAAGCCCTCCCGTAGTGGCTGGACACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| CDS-3UTR CCA 90 bp | TCTCCAGGCCCCACAGGGTGGTCTCTATGGGACTCAGCCAGTGACATGCGGTACCTGGTTGTCCTTTCCTaGTTTGGGCAGCAAGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: SPGPTGWSLWDSASDMRYLVVLS*FGQQGW Trigger: CCACCCTTGCTGCCCAAACCAGGAAAGGACAACCAG...GTACCGCATGTCACTGGCTGAGTCCCATAGAGACCACCCTGTGGGGCCTGGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| CDS-3UTR CCA 90 bp | CTCTCACTTTGCCATATCTCTTCCCACCAACTGATCTGTGTCTGTCCGATAGGCACGGAAGGCCCCAGGTaGGGTGGCGGTCACCCCCGA | + |
|
Preference number: 4 (lower is better) Translates to: LSLCHISSHQLICVCPIGTEGPR*GGGHPR Trigger: TCGGGGGTGACCGCCACCCCACCTGGGGCCTTCCGT...GCCTATCGGACAGACACAGATCAGTTGGTGGGAAGAGATATGGCAAAGTGAGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 72 bp | TGGCAGGCCTGGCTGTGGGCGGCTCCTCTACATGTTTaGCTTCAGGAGCTGCAGGAGGTGGACTATAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: WQAWLWAAPLHV*LQELQEVDYKV Trigger: CACCTTATAGTCCACCTCCTGCAGCTCCTGAAGCAAAACATGTAGAGGAGCCGCCCACAGCCAGGCCTGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 72 bp | CCAGGTTCGGCTTCAGTTCTGGAAACGCAGGCTCCTTaGCCTCCTCCATCAGCTGCTTCTTTAGCCGTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: PGSASVLETQAP*PPPSAASLAVS Trigger: GGACACGGCTAAAGAAGCAGCTGATGGAGGAGGCAAAGGAGCCTGCGTTTCCAGAACTGAAGCCGAACCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 72 bp | CCCATTACATCCCAGGTGGGGCTACCAGCTCAATCCTaGCTGAGTCTTGTTACACCTGGCTCTTCTGGATCA | + |
|
Preference number: 4 (lower is better) Translates to: PITSQVGLPAQS*LSLVTPGSSGS Trigger: TGATCCAGAAGAGCCAGGTGTAACAAGACTCAGCAAGGATTGAGCTGGTAGCCCCACCTGGGATGTAATGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| CDS-3UTR GCA 90 bp | GATATCTACAGGACCACAGAAAATTCTTTCTCAATTGCCCAGTCCTATGTACCTAGGTCTTGGGCCACCTaGTGCCGGGGGTATCGACAC | + |
|
Preference number: 4 (lower is better) Translates to: DIYRTTENSFSIAQSYVPRSWAT*CRGYRH Trigger: GTGTCGATACCCCCGGCAGCAGGTGGCCCAAGACCT...AGGTACATAGGACTGGGCAATTGAGAAAGAATTTTCTGTGGTCCTGTAGATATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 72 bp | AGCCACATGCTCCCAGCTTCATTCACTTCTCTCACTTaGCCATATCTCTTCCCACCAACTGATCTGTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: SHMLPASFTSLT*PYLFPPTDLCL Trigger: CAGACACAGATCAGTTGGTGGGAAGAGATATGGCAAAGTGAGAGAAGTGAATGAAGCTGGGAGCATGTGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| 3UTR CAA 72 bp | CACCATGCATTTGGTGCAGTCTTAATCAGTAAGCCCTaGCTGTCAGGAAACCAGAAGGGATATCTACAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: HHAFGAVLISKP*LSGNQKGYLQD Trigger: GTCCTGTAGATATCCCTTCTGGTTTCCTGACAGCAAGGGCTTACTGATTAAGACTGCACCAAATGCATGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| CDS-3UTR CAA 90 bp | AGGCCCACCACAGGGGCTGGCACCTCTGGTTGCATTGGCTCCAGGTTCGGCTTCGGGAGGGCTCAGGTCTaGGGCCACCTGCTGCCGGGG | + |
|
Preference number: 5 (lower is better) Translates to: RPTTGAGTSGCIGSRFGFGRAQV*GHLLPG Trigger: CCCCGGCAGCAGGTGGCCCAAGACCTGAGCCCTCCC...GAAGCCGAACCTGGAGCCAATGCAACCAGAGGTGCCAGCCCCTGTGGTGGGCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| CDS-3UTR CAA 90 bp | ACACAGGCTTTTATCTCCATCCAGGGCCATTCTGGGGGACTCAGAAGTCCCAATAGTAGCCAGAGACCTTaGCTGGGGAAGGAGGGGACA | + |
|
Preference number: 5 (lower is better) Translates to: TQAFISIQGHSGGLRSPNSSQRP*LGKEGT Trigger: TGTCCCCTCCTTCCCCAGCAAAGGTCTCTGGCTACT...ATTGGGACTTCTGAGTCCCCCAGAATGGCCCTGGATGGAGATAAAAGCCTGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000054910.9 |
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| CDS CCA 72 bp | GAGCAGGACACAGGACTGTGGTCTCCAGGTCATGACTaGCCTCACTCACAGGGGACAGGGAGGTACGGAAGG | + |
|
Preference number: 6 (lower is better) Translates to: EQDTGLWSPGHD*PHSQGTGRYGR Trigger: CCTTCCGTACCTCCCTGTCCCCTGTGAGTGAGGCCAGTCATGACCTGGAGACCACAGTCCTGTGTCCTGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238347.2 |
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| CDS CCA 72 bp | GGCAAAGCCACTGTGGGGGCAGGCAGTTTCTGGGGCTaGAGCGTCAAGACTAGAAGGTGCCTTGAAATGAGT | + |
|
Preference number: 6 (lower is better) Translates to: GKATVGAGSFWG*SVKTRRCLEMS Trigger: ACTCATTTCAAGGCACCTTCTAGTCTTGACGCTCCAGCCCCAGAAACTGCCTGCCCCCACAGTGGCTTTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238347.2 |
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| CDS CCA 72 bp | TACATGGGCAAAGCCACTGTGGGGGCAGGCAGTTTCTaGGGCTGGAGCGTCAAGACTAGAAGGTGCCTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: YMGKATVGAGSF*GWSVKTRRCLE Trigger: TTCAAGGCACCTTCTAGTCTTGACGCTCCAGCCCCAGAAACTGCCTGCCCCCACAGTGGCTTTGCCCATGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238347.2 |
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