Pregenerated sensors for PRR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038500Ensembl transcript IDs: ENSMUST00000055454.14, ENSMUST00000165613.9, ENSMUST00000172429.8, ENSMUST00000172900.8, ENSMUST00000173724.2, ENSMUST00000173872.8, ENSMUST00000174849.8
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTATACCAGTCACTCAAACTCGACCTCAAGGCCAGACAACCTGGTaGACTTCCTGGCAGCTGCAAACACTGGGGTTTTACGTGAAAGGA | + |
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Preference number: 1 (lower is better) Translates to: SIPVTQTRPQGQTTW*TSWQLQTLGFYVKG Trigger: TCCTTTCACGTAAAACCCCAGTGTTTGCAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCCTTGAGGTCGAGTTTGAGTGACTGGTATAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR CCA 90 bp | AAGTCTATACCAGTCACTCAAACTCGACCTCAAGGCCAGACAACCTaGTGCACTTCCTGGCAGCTGCAAACACTGGGGTTTTACGTGAAA | + |
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Preference number: 1 (lower is better) Translates to: KSIPVTQTRPQGQTT*CTSWQLQTLGFYVK Trigger: TTTCACGTAAAACCCCAGTGTTTGCAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCCTTGAGGTCGAGTTTGAGTGACTGGTATAGACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR CCA 90 bp | AGGGTCAGAGATGACAGCACTGTTCAGGTTCCATCCAAAGACAGGTaGAGTTTCACAAAGTCAAACCAAAGGGTCGGTGGCCTCACAATG | + |
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Preference number: 1 (lower is better) Translates to: RVRDDSTVQVPSKDR*SFTKSNQRVGGLTM Trigger: CATTGTGAGGCCACCGACCCTTTGGTTTGACTTTGTGAAACTCCACCTGTCTTTGGATGGAACCTGAACAGTGCTGTCATCTCTGACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR TCA 90 bp | AAAGTCCAATTGAGACAACTTTGTTTACTGACAGAACCACTTCGTTaGTTTCATCTTTACACAGAATTCTGTGTTCATATATCTACAGGC | + |
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Preference number: 1 (lower is better) Translates to: KVQLRQLCLLTEPLR*FHLYTEFCVHISTG Trigger: GCCTGTAGATATATGAACACAGAATTCTGTGTAAAGATGAAATCAACGAAGTGGTTCTGTCAGTAAACAAAGTTGTCTCAATTGGACTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165613.9 |
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| 3UTR-3UTR GCA 90 bp | GCCAGGCAGGAGCTGTTTGGGGAGGCCCGCCTGAGGCTTTCCAAGACACCACTGGGCCAGACAACCTGGTaGACTTCCTGGCAGCTGCAA | + |
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Preference number: 2 (lower is better) Translates to: ARQELFGEARLRLSKTPLGQTTW*TSWQLQ Trigger: TTGCAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCC...CAGTGGTGTCTTGGAAAGCCTCAGGCGGGCCTCCCCAAACAGCTCCTGCCTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR TCA 90 bp | CCGCCTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACAATGTTGGGAGGTAGGTaGACTCCAGAGGGCACCAAG | + |
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Preference number: 2 (lower is better) Translates to: PPEAFQDTTGQSDPECPTMLGGR*TPEGTK Trigger: CTTGGTGCCCTCTGGAGTTCACCTACCTCCCAACAT...TGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAGGCGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR GCA 90 bp | GCCAGGCAGGAGCTGTTTGGGGAGGCCCGCCTGAGGCTTTCCAAGACACCACTGGGGTGGATGTGTCAGTaGTTGAAGGTGACAGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: ARQELFGEARLRLSKTPLGWMCQ*LKVTEE Trigger: CTCTTCTGTCACCTTCAAGCACTGACACATCCACCC...CAGTGGTGTCTTGGAAAGCCTCAGGCGGGCCTCCCCAAACAGCTCCTGCCTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CCA 90 bp | CTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACACCAGGCCACAGAGAGTGCATaGCCACTAGGTCAGAGGGCT | + |
|
Preference number: 2 (lower is better) Translates to: LRLSKTPLASQTQNARHQATESA*PLGQRA Trigger: AGCCCTCTGACCTAGTGGCCATGCACTCTCTGTGGC...CTGGTGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGGCACGATGGGGAGGCAGTCTGAAGAAGTCTCACGTCCTCCCATGTTGGGACAAGGCCAGACAACCTaGTGCACTTCCTGGCAGCTG | + |
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Preference number: 2 (lower is better) Translates to: EGTMGRQSEEVSRPPMLGQGQTT*CTSWQL Trigger: CAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCCTTG...TCCCAACATGGGAGGACGTGAGACTTCTTCAGACTGCCTCCCCATCGTGCCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACACCAATGTTGGGAGGTAGGTaGACTCCAGAGGGCACCAAG | + |
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Preference number: 2 (lower is better) Translates to: PEAFQDTTGQSDPECPTPMLGGR*TPEGTK Trigger: CTTGGTGCCCTCTGGAGTTCACCTACCTCCCAACAT...TGGTGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CCA 90 bp | CCGCCTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACAGGAAAAGTAGCAAGATaGGGTCCCGAAGGTCTCTAC | + |
|
Preference number: 2 (lower is better) Translates to: PPEAFQDTTGQSDPECPTGKVAR*GPEGLY Trigger: GTAGAGACCTTCGGGACCCCATCTTGCTACTTTTCC...TGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAGGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR GCA 90 bp | CCTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACACCAGGGTGGATGTGTCAGTaGTTGAAGGTGACAGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: PEAFQDTTGQSDPECPTPGWMCQ*LKVTEE Trigger: CTCTTCTGTCACCTTCAAGCACTGACACATCCACCC...TGGTGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CCA 90 bp | TCAAGGCCAGACAACCTGGTGCACTTCCTGGCAGCTGCAAACACTGGGGTTTTAGCCACAGAGAGTGCATaGCCACTAGGTCAGAGGGCT | + |
|
Preference number: 2 (lower is better) Translates to: SRPDNLVHFLAAANTGVLATESA*PLGQRA Trigger: AGCCCTCTGACCTAGTGGCCATGCACTCTCTGTGGC...TAAAACCCCAGTGTTTGCAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCCTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CCA 90 bp | CCCACTTCCGTAGGGCCTGTTCAAAACCCACCATGTTCACTGCTGTTTTCACAGGGAAAAGTAGCAAGATaGGGTCCCGAAGGTCTCTAC | + |
|
Preference number: 2 (lower is better) Translates to: PTSVGPVQNPPCSLLFSQGKVAR*GPEGLY Trigger: GTAGAGACCTTCGGGACCCCATCTTGCTACTTTTCC...CTGTGAAAACAGCAGTGAACATGGTGGGTTTTGAACAGGCCCTACGGAAGTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CCA 90 bp | CAAAAGCAGGTAGAGGCCGTTCAAGGAGCAAGTCTATACCAGTCACTCAAACTCATACCGAGGGACAGGTaGACAAATGCACAAGAAACA | + |
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Preference number: 2 (lower is better) Translates to: QKQVEAVQGASLYQSLKLIPRDR*TNAQET Trigger: TGTTTCTTGTGCATTTGTCCACCTGTCCCTCGGTAT...GAGTTTGAGTGACTGGTATAGACTTGCTCCTTGAACGGCCTCTACCTGCTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CCA 90 bp | ACTTTGTTTACTGACAGAACCACTTCGTTGATTTCATCTTTACACAGAATTCTGTATTGCAGGAGAGGCTaGCCAGGAACTCCTGATCCT | + |
|
Preference number: 2 (lower is better) Translates to: TLFTDRTTSLISSLHRILYCRRG*PGTPDP Trigger: AGGATCAGGAGTTCCTGGCCAGCCTCTCCTGCAATA...CAGAATTCTGTGTAAAGATGAAATCAACGAAGTGGTTCTGTCAGTAAACAAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165613.9 |
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| 3UTR-3UTR GCA 90 bp | ACTTTGTTTACTGACAGAACCACTTCGTTGATTTCATCTTTACACAGAATTCTGTCTCAAATTTGCTATTaGAGGAGAGGCTGGCCAGGA | + |
|
Preference number: 2 (lower is better) Translates to: TLFTDRTTSLISSLHRILSQICY*RRGWPG Trigger: TCCTGGCCAGCCTCTCCTGCAATAGCAAATTTGAGA...CAGAATTCTGTGTAAAGATGAAATCAACGAAGTGGTTCTGTCAGTAAACAAAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165613.9 |
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| 3UTR CCA 72 bp | CAGACCCAGAATGCCCGACACCAGGAGAGGGCACGATaGGGAGGCAGTCTGAAGAAGTCTCACGTCCTCCCA | + |
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Preference number: 3 (lower is better) Translates to: QTQNARHQERAR*GGSLKKSHVLP Trigger: TGGGAGGACGTGAGACTTCTTCAGACTGCCTCCCCATCGTGCCCTCTCCTGGTGTCGGGCATTCTGGGTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR CCA 72 bp | CAGAGCCGAACTAAAACGGGCCAGGCAGGAGCTGTTTaGGGAGGCCCGCCTGAGGCTTTCCAAGACACCACT | + |
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Preference number: 3 (lower is better) Translates to: QSRTKTGQAGAV*GGPPEAFQDTT Trigger: AGTGGTGTCTTGGAAAGCCTCAGGCGGGCCTCCCCAAACAGCTCCTGCCTGGCCCGTTTTAGTTCGGCTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CAA 90 bp | CCGCCTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACACTGTTGAGCAGTCTTTaGGCAGAGGGGAAGATCCAG | + |
|
Preference number: 3 (lower is better) Translates to: PPEAFQDTTGQSDPECPTLLSSL*AEGKIQ Trigger: CTGGATCTTCCCCTCTGCCAAAAGACTGCTCAACAG...TGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAGGCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CAA 90 bp | CCTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACACCACTGTTGAGCAGTCTTTaGGCAGAGGGGAAGATCCAG | + |
|
Preference number: 3 (lower is better) Translates to: PEAFQDTTGQSDPECPTPLLSSL*AEGKIQ Trigger: CTGGATCTTCCCCTCTGCCAAAAGACTGCTCAACAG...TGGTGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR CCA 72 bp | CCAGTCACTCAAACTCGACCTCAAGGCCAGACAACCTaGTGCACTTCCTGGCAGCTGCAAACACTGGGGTTT | + |
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Preference number: 3 (lower is better) Translates to: PVTQTRPQGQTT*CTSWQLQTLGF Trigger: AAACCCCAGTGTTTGCAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCCTTGAGGTCGAGTTTGAGTGACTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR TCA 72 bp | TCACAAAGTCAAACCAAAGGGTCGGTGGCCTCACAATaGCAGAGCCGAACTAAAACGGGCCAGGCAGGAGCT | + |
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Preference number: 3 (lower is better) Translates to: SQSQTKGSVASQ*QSRTKTGQAGA Trigger: AGCTCCTGCCTGGCCCGTTTTAGTTCGGCTCTGTCATTGTGAGGCCACCGACCCTTTGGTTTGACTTTGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR TCA 72 bp | AAACACGCAGTGCCGGGGAAGGAAGAGGGTCAGAGATaGCAGCACTGTTCAGGTTCCATCCAAAGACAGGTG | + |
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Preference number: 3 (lower is better) Translates to: KHAVPGKEEGQR*QHCSGSIQRQV Trigger: CACCTGTCTTTGGATGGAACCTGAACAGTGCTGTCATCTCTGACCCTCTTCCTTCCCCGGCACTGCGTGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR GCA 72 bp | GTCACTCAAACTCGACCTCAAGGCCAGACAACCTGGTaGACTTCCTGGCAGCTGCAAACACTGGGGTTTTAC | + |
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Preference number: 3 (lower is better) Translates to: VTQTRPQGQTTW*TSWQLQTLGFY Trigger: GTAAAACCCCAGTGTTTGCAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCCTTGAGGTCGAGTTTGAGTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR GCA 72 bp | GTCTCTACAGCCTGGATCAGAAGACAGTGTGCACTGTaGACTAGTGACAATCACAGCTCTGGACCTCAAATA | + |
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Preference number: 3 (lower is better) Translates to: VSTAWIRRQCAL*TSDNHSSGPQI Trigger: TATTTGAGGTCCAGAGCTGTGATTGTCACTAGTGCACAGTGCACACTGTCTTCTGATCCAGGCTGTAGAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| 3UTR-3UTR CAA 90 bp | ACTTTGTTTACTGACAGAACCACTTCGTTGATTTCATCTTTACACAGAATTCTGGTCTCAAATTTGCTATaGCAGGAGAGGCTGGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: TLFTDRTTSLISSLHRILVSNLL*QERLAR Trigger: CCTGGCCAGCCTCTCCTGCAATAGCAAATTTGAGAC...CAGAATTCTGTGTAAAGATGAAATCAACGAAGTGGTTCTGTCAGTAAACAAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165613.9 |
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| CDS-3UTR TCA 90 bp | GCCAGGCAGGAGCTGTTTGGGGAGGCCCGCCTGAGGCTTTCCAAGACACCACTGAAGGAGGTTCGGCATTaGTACCCCACCAACCACGAC | + |
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Preference number: 4 (lower is better) Translates to: ARQELFGEARLRLSKTPLKEVRH*YPTNHD Trigger: GTCGTGGTTGGTGGGGTATCAATGCCGAACCTCCTT...CAGTGGTGTCTTGGAAAGCCTCAGGCGGGCCTCCCCAAACAGCTCCTGCCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR GCA 90 bp | CCGCCTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACAGTCCCGCTCAGACAGTaGGAGATGTTGCTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: PPEAFQDTTGQSDPECPTVPLRQ*EMLLLL Trigger: CAGCAGCAGCAACATCTCGCACTGTCTGAGCGGGAC...TGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAGGCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055454.14 |
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| CDS-3UTR CCA 90 bp | CTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACACCAGCGGGAGACTCAGCAGTaGGGGAATCATCCGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: LRLSKTPLASQTQNARHQRETQQ*GNHPSP Trigger: AGGGGACGGATGATTCCCCCACTGCTGAGTCTCCCG...CTGGTGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR CCA 90 bp | GCCAGGCAGGAGCTGTTTGGGGAGGCCCGCCTGAGGCTTTCCAAGACACCACTGGGGGCTGTCCTTGGGTaGGTAGGTATTCTTGACAAG | + |
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Preference number: 4 (lower is better) Translates to: ARQELFGEARLRLSKTPLGAVLG*VGILDK Trigger: CTTGTCAAGAATACCTACCCACCCAAGGACAGCCCC...CAGTGGTGTCTTGGAAAGCCTCAGGCGGGCCTCCCCAAACAGCTCCTGCCTGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR CCA 90 bp | ACAACCTGGTGCACTTCCTGGCAGCTGCAAACACTGGGGTTTTACGTGAAAGGAGAGGGCCCAGAAGGCTaGGTGGTCCCATGGGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: TTWCTSWQLQTLGFYVKGEGPEG*VVPWGA Trigger: AGCGCCCCATGGGACCACCCAGCCTTCTGGGCCCTC...TCCTTTCACGTAAAACCCCAGTGTTTGCAGCTGCCAGGAAGTGCACCAGGTTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055454.14 |
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| CDS-3UTR TCA 90 bp | CCTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACACCACAAGAGACCAGCTTCTaGGCCTTCGTGGGTTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: PEAFQDTTGQSDPECPTPQETSF*AFVGFS Trigger: CGAGAAACCCACGAAGGCTCAGAAGCTGGTCTCTTG...TGGTGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR CCA 90 bp | GAGGGCACGATGGGGAGGCAGTCTGAAGAAGTCTCACGTCCTCCCATGTTGGGACCTGGAGGACCCCTGTaGAAAGCTGACTTGGGATCA | + |
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Preference number: 4 (lower is better) Translates to: EGTMGRQSEEVSRPPMLGPGGPL*KADLGS Trigger: TGATCCCAAGTCAGCTTTCCACAGGGGTCCTCCAGG...TCCCAACATGGGAGGACGTGAGACTTCTTCAGACTGCCTCCCCATCGTGCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR CCA 90 bp | CTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACACCAGTTGTCTTCCATCATCTaGGGGCTGTCCTTGGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: LRLSKTPLASQTQNARHQLSSII*GLSLGG Trigger: CCCACCCAAGGACAGCCCCCAGATGATGGAAGACAA...CTGGTGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR GCA 90 bp | ACAACCTGGTGCACTTCCTGGCAGCTGCAAACACTGGGGTTTTACGTGAAAGGAGACAGTGCGAGATGTTaGTGCTGCTGCGGCAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: TTWCTSWQLQTLGFYVKGDSARC*CCCGSG Trigger: GCCGCTGCCGCAGCAGCAGCAACATCTCGCACTGTC...TCCTTTCACGTAAAACCCCAGTGTTTGCAGCTGCCAGGAAGTGCACCAGGTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055454.14 |
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| CDS-3UTR CCA 90 bp | CTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACACCAGTGTGGAAAGCTGACTTaGGATCACCAGGCTTCCCGT | + |
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Preference number: 4 (lower is better) Translates to: LRLSKTPLASQTQNARHQCGKLT*DHQASR Trigger: ACGGGAAGCCTGGTGATCCCAAGTCAGCTTTCCACA...CTGGTGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR CCA 90 bp | GTCACTCAAACTCGACCTCAAGGCCAGACAACCTGGTGCACTTCCTGGCAGCTGCCTGGAGGACCCCTGTaGAAAGCTGACTTGGGATCA | + |
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Preference number: 4 (lower is better) Translates to: VTQTRPQGQTTWCTSWQLPGGPL*KADLGS Trigger: TGATCCCAAGTCAGCTTTCCACAGGGGTCCTCCAGG...CAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCCTTGAGGTCGAGTTTGAGTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR GCA 90 bp | CAAAAGCAGGTAGAGGCCGTTCAAGGAGCAAGTCTATACCAGTCACTCAAACTCAGTGCGAGATGTTGCTaGTGCTGCGGCAGCGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: QKQVEAVQGASLYQSLKLSARCC*CCGSGG Trigger: GCCGCCGCTGCCGCAGCAGCAGCAACATCTCGCACT...GAGTTTGAGTGACTGGTATAGACTTGCTCCTTGAACGGCCTCTACCTGCTTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055454.14 |
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| CDS-3UTR CCA 90 bp | GTCACTCAAACTCGACCTCAAGGCCAGACAACCTGGTGCACTTCCTGGCAGCTGTGTGGAAAGCTGACTTaGGATCACCAGGCTTCCCGT | + |
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Preference number: 4 (lower is better) Translates to: VTQTRPQGQTTWCTSWQLCGKLT*DHQASR Trigger: ACGGGAAGCCTGGTGATCCCAAGTCAGCTTTCCACA...CAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCCTTGAGGTCGAGTTTGAGTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR TCA 90 bp | TCAAGGCCAGACAACCTGGTGCACTTCCTGGCAGCTGCAAACACTGGGGTTTTAAAGGAGGTTCGGCATTaGTACCCCACCAACCACGAC | + |
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Preference number: 4 (lower is better) Translates to: SRPDNLVHFLAAANTGVLKEVRH*YPTNHD Trigger: GTCGTGGTTGGTGGGGTATCAATGCCGAACCTCCTT...TAAAACCCCAGTGTTTGCAGCTGCCAGGAAGTGCACCAGGTTGTCTGGCCTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR CCA 90 bp | CCCACTTCCGTAGGGCCTGTTCAAAACCCACCATGTTCACTGCTGTTTTCACAGGGGGCTGTCCTTGGGTaGGTAGGTATTCTTGACAAG | + |
|
Preference number: 4 (lower is better) Translates to: PTSVGPVQNPPCSLLFSQGAVLG*VGILDK Trigger: CTTGTCAAGAATACCTACCCACCCAAGGACAGCCCC...CTGTGAAAACAGCAGTGAACATGGTGGGTTTTGAACAGGCCCTACGGAAGTGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR CCA 90 bp | CCGCCTGAGGCTTTCCAAGACACCACTGGCCAGTCAGACCCAGAATGCCCGACATCTTCATATCGACAGTaGCCCTTCTTAGAAAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: PPEAFQDTTGQSDPECPTSSYRQ*PFLEKC Trigger: ACACTTTTCTAAGAAGGGCCACTGTCGATATGAAGA...TGTCGGGCATTCTGGGTCTGACTGGCCAGTGGTGTCTTGGAAAGCCTCAGGCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR TCA 90 bp | CAAAAGCAGGTAGAGGCCGTTCAAGGAGCAAGTCTATACCAGTCACTCAAACTCCAAGAGACCAGCTTCTaGGCCTTCGTGGGTTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: QKQVEAVQGASLYQSLKLQETSF*AFVGFS Trigger: CGAGAAACCCACGAAGGCTCAGAAGCTGGTCTCTTG...GAGTTTGAGTGACTGGTATAGACTTGCTCCTTGAACGGCCTCTACCTGCTTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR GCA 90 bp | TCCAAACGGTTAATATATGATCCCTCATTTAGGTACACACAATCCCTGGGCTTTAGTGCGAGATGTTGCTaGTGCTGCGGCAGCGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: SKRLIYDPSFRYTQSLGFSARCC*CCGSGG Trigger: GCCGCCGCTGCCGCAGCAGCAGCAACATCTCGCACT...AAAGCCCAGGGATTGTGTGTACCTAAATGAGGGATCATATATTAACCGTTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174849.8 |
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| CDS-3UTR CCA 90 bp | TGGTGCACTTCCTGGCAGCTGCAAACACTGGGGTTTTACGTGAAAGGACTTAAATTGTCTTCCATCATCTaGGGGCTGTCCTTGGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: WCTSWQLQTLGFYVKGLKLSSII*GLSLGG Trigger: CCCACCCAAGGACAGCCCCCAGATGATGGAAGACAA...TTTAAGTCCTTTCACGTAAAACCCCAGTGTTTGCAGCTGCCAGGAAGTGCACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055454.14 ENSMUST00000172429.8 |
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| CDS-3UTR GCA 90 bp | ACTTTGTTTACTGACAGAACCACTTCGTTGATTTCATCTTTACACAGAATTCTGAGTGCGAGATGTTGCTaGTGCTGCGGCAGCGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: TLFTDRTTSLISSLHRILSARCC*CCGSGG Trigger: GCCGCCGCTGCCGCAGCAGCAGCAACATCTCGCACT...CAGAATTCTGTGTAAAGATGAAATCAACGAAGTGGTTCTGTCAGTAAACAAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165613.9 |
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| CDS-3UTR GCA 90 bp | ATTTCCAAACGGTTAATATATGATCCCTCATTTAGGTACACACAATCCCTGGGCGTCCCGCTCAGACAGTaGGAGATGTTGCTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: ISKRLIYDPSFRYTQSLGVPLRQ*EMLLLL Trigger: CAGCAGCAGCAACATCTCGCACTGTCTGAGCGGGAC...GCCCAGGGATTGTGTGTACCTAAATGAGGGATCATATATTAACCGTTTGGAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174849.8 |
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| CDS-3UTR GCA 90 bp | ACTTTGTTTACTGACAGAACCACTTCGTTGATTTCATCTTTACACAGAATTCTGGACAGTGCGAGATGTTaGTGCTGCTGCGGCAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: TLFTDRTTSLISSLHRILDSARC*CCCGSG Trigger: GCCGCTGCCGCAGCAGCAGCAACATCTCGCACTGTC...CAGAATTCTGTGTAAAGATGAAATCAACGAAGTGGTTCTGTCAGTAAACAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165613.9 |
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| CDS-3UTR CCA 90 bp | CGTATTTCCAAACGGTTAATATATGATCCCTCATTTAGGTACACACAATCCCTGGAGGGCCCAGAAGGCTaGGTGGTCCTTAACTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: RISKRLIYDPSFRYTQSLEGPEG*VVLNCW Trigger: CCAACAGTTAAGGACCACCCAGCCTTCTGGGCCCTC...CAGGGATTGTGTGTACCTAAATGAGGGATCATATATTAACCGTTTGGAAATACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174849.8 |
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| CDS-3UTR CCA 90 bp | ATTTCCAAACGGTTAATATATGATCCCTCATTTAGGTACACACAATCCCTGGGCTCTCCTCACCTGACTTaGGATCACCAGGCTTCCCGT | + |
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Preference number: 4 (lower is better) Translates to: ISKRLIYDPSFRYTQSLGSPHLT*DHQASR Trigger: ACGGGAAGCCTGGTGATCCCAAGTCAGGTGAGGAGA...GCCCAGGGATTGTGTGTACCTAAATGAGGGATCATATATTAACCGTTTGGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174849.8 |
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| CDS-3UTR GCA 90 bp | ACTTTGTTTACTGACAGAACCACTTCGTTGATTTCATCTTTACACAGAATTCTGGTCCCGCTCAGACAGTaGGAGATGTTGCTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TLFTDRTTSLISSLHRILVPLRQ*EMLLLL Trigger: CAGCAGCAGCAACATCTCGCACTGTCTGAGCGGGAC...CAGAATTCTGTGTAAAGATGAAATCAACGAAGTGGTTCTGTCAGTAAACAAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165613.9 |
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| CDS-3UTR CCA 90 bp | ACTTTGTTTACTGACAGAACCACTTCGTTGATTTCATCTTTACACAGAATTCTGGAGGGCCCAGAAGGCTaGGTGGTCCTTAACTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: TLFTDRTTSLISSLHRILEGPEG*VVLNCW Trigger: CCAACAGTTAAGGACCACCCAGCCTTCTGGGCCCTC...CAGAATTCTGTGTAAAGATGAAATCAACGAAGTGGTTCTGTCAGTAAACAAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165613.9 |
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| CDS-3UTR TCA 90 bp | ATTTCCAAACGGTTAATATATGATCCCTCATTTAGGTACACACAATCCCTGGGCCCAGGGCTTAAAACATaGATCAGGGCCCAATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: ISKRLIYDPSFRYTQSLGPGLKT*IRAQFL Trigger: GAGAAATTGGGCCCTGATTCATGTTTTAAGCCCTGG...GCCCAGGGATTGTGTGTACCTAAATGAGGGATCATATATTAACCGTTTGGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174849.8 |
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| CDS CCA 90 bp | CTCCTCTCCTTCCCTCGGGGGAGTAGTTCACAGAAGGTTGACCCATaGGGCGCTCATCCTCCTCATCTCCAGGCTCGTCCCGCTCAGACA | + |
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Preference number: 5 (lower is better) Translates to: LLSFPRGSSSQKVDP*GAHPPHLQARPAQT Trigger: TGTCTGAGCGGGACGAGCCTGGAGATGAGGAGGATGAGCGCCCCATGGGTCAACCTTCTGTGAACTACTCCCCCGAGGGAAGGAGAGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165613.9 ENSMUST00000172900.8 ENSMUST00000174849.8 |
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| CDS-3UTR CAA 90 bp | CGTATTTCCAAACGGTTAATATATGATCCCTCATTTAGGTACACACAATCCCTGGTAGTTCACAGAAGGTaGACCCATGGGGCGCTCATC | + |
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Preference number: 5 (lower is better) Translates to: RISKRLIYDPSFRYTQSLVVHRR*THGALI Trigger: GATGAGCGCCCCATGGGTCAACCTTCTGTGAACTAC...CAGGGATTGTGTGTACCTAAATGAGGGATCATATATTAACCGTTTGGAAATACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174849.8 |
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| CDS-3UTR CAA 90 bp | CAACACCGTATTTCCAAACGGTTAATATATGATCCCTCATTTAGGTACACACAATTCTCCTCACCTGACTaGGGATCACCAGGCTTCCCG | + |
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Preference number: 5 (lower is better) Translates to: QHRISKRLIYDPSFRYTQFSSPD*GSPGFP Trigger: CGGGAAGCCTGGTGATCCCAAGTCAGGTGAGGAGAA...TTGTGTGTACCTAAATGAGGGATCATATATTAACCGTTTGGAAATACGGTGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174849.8 |
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| CDS-3UTR CAA 90 bp | ACTTTGTTTACTGACAGAACCACTTCGTTGATTTCATCTTTACACAGAATTCTGGTAGTTCACAGAAGGTaGACCCATGGGGCGCTCATC | + |
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Preference number: 5 (lower is better) Translates to: TLFTDRTTSLISSLHRILVVHRR*THGALI Trigger: GATGAGCGCCCCATGGGTCAACCTTCTGTGAACTAC...CAGAATTCTGTGTAAAGATGAAATCAACGAAGTGGTTCTGTCAGTAAACAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165613.9 |
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| CDS GCA 72 bp | TCGTCCCGCTCAGACAGTGCGAGATGTTGCTGCTGCTaGGGCAGCGGCGGCGGCTGGTCCTGCTTCTTTCGT | + |
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Preference number: 6 (lower is better) Translates to: SSRSDSARCCCC*GSGGGWSCFFR Trigger: ACGAAAGAAGCAGGACCAGCCGCCGCCGCTGCCGCAGCAGCAGCAACATCTCGCACTGTCTGAGCGGGACGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000055454.14 ENSMUST00000165613.9 ENSMUST00000172900.8 ENSMUST00000173724.2 ENSMUST00000173872.8 ENSMUST00000174849.8 |
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| CDS CCA 72 bp | TTCCCTCGGGGGAGTAGTTCACAGAAGGTTGACCCATaGGGCGCTCATCCTCCTCATCTCCAGGCTCGTCCC | + |
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Preference number: 6 (lower is better) Translates to: FPRGSSSQKVDP*GAHPPHLQARP Trigger: GGGACGAGCCTGGAGATGAGGAGGATGAGCGCCCCATGGGTCAACCTTCTGTGAACTACTCCCCCGAGGGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165613.9 ENSMUST00000172900.8 ENSMUST00000174849.8 |
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