Pregenerated sensors for PRR27 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002240Ensembl transcript IDs: ENSMUST00000002310.8, ENSMUST00000101056.8
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGTGCCATGAGGCGGGATGCATCAGGGACAGCTGCCTCTAACTGGTaGGGGGCAGGCTCAGGTGCACCAAACTGGACTGGGGCAGGCTCA | + |
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Preference number: 5 (lower is better) Translates to: GAMRRDASGTAASNW*GAGSGAPNWTGAGS Trigger: TGAGCCTGCCCCAGTCCAGTTTGGTGCACCTGAGCCTGCCCCCCACCAGTTAGAGGCAGCTGTCCCTGATGCATCCCGCCTCATGGCACC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 90 bp | TGCACCAAACTGGACTGGGGCAGGCTCAGGTGCACCAAACGGGGATaGAGCAGGTTCGGGTGCAAGAGGTTTGGGTCCGGAGGGTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: CTKLDWGRLRCTKRG*SRFGCKRFGSGGWH Trigger: GTGCCACCCTCCGGACCCAAACCTCTTGCACCCGAACCTGCTCCATCCCCGTTTGGTGCACCTGAGCCTGCCCCAGTCCAGTTTGGTGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 90 bp | GTATGGCCTGGGAGGAAAGTGTTTGGGAGGAGGAAGAGGGGCGACTaGGGGACCATTCAATGGAGCATCAGCTGGGTAGTTGAGACTTTG | + |
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Preference number: 5 (lower is better) Translates to: VWPGRKVFGRRKRGD*GTIQWSISWVVETL Trigger: CAAAGTCTCAACTACCCAGCTGATGCTCCATTGAATGGTCCCCCAGTCGCCCCTCTTCCTCCTCCCAAACACTTTCCTCCCAGGCCATAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 90 bp | AAAGTGTTTGGGAGGAGGAAGAGGGGCGACTGGGGGACCATTCAATaGAGCATCAGCTGGGTAGTTGAGACTTTGGTATACATAGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: KVFGRRKRGDWGTIQ*SISWVVETLVYIAK Trigger: CTTCGCTATGTATACCAAAGTCTCAACTACCCAGCTGATGCTCCATTGAATGGTCCCCCAGTCGCCCCTCTTCCTCCTCCCAAACACTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 90 bp | TTTGCTTCAGTAGGCTCAGCTGTAATAAGTTTTCCCACAACAGACTaGCTCGCCATAAGTTCAGCTGGAGGAGGTCGGCCTGCAGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: FASVGSAVISFPTTD*LAISSAGGGRPAAD Trigger: ATCTGCTGCAGGCCGACCTCCTCCAGCTGAACTTATGGCGAGCCAGTCTGTTGTGGGAAAACTTATTACAGCTGAGCCTACTGAAGCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS TCA 90 bp | AAGTGGGTAGCGATTTCCAAAGTAATCCTCTTCAGTGGACGAGGGTaGTTTCCTCTTTGCAAAAGCGACACACATGATGCAGGCCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: KWVAISKVILFSGRG*FPLCKSDTHDAGPK Trigger: CTTTGGGCCTGCATCATGTGTGTCGCTTTTGCAAAGAGGAAATCACCCTCGTCCACTGAAGAGGATTACTTTGGAAATCGCTACCCACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002310.8 |
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| CDS GCA 90 bp | TTGGCTGGCAGATTTGGCCTCAACAGGCTCAAGTACCTGTGGTTTTaGTTCAGTAGGCTCAGCTGTAATAAGTTTTCCCACAACAGACTG | + |
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Preference number: 5 (lower is better) Translates to: LAGRFGLNRLKYLWF*FSRLSCNKFSHNRL Trigger: CAGTCTGTTGTGGGAAAACTTATTACAGCTGAGCCTACTGAAGCAAAACCACAGGTACTTGAGCCTGTTGAGGCCAAATCTGCCAGCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS GCA 72 bp | CTCAGGTGCACCAAACGGGGATGGAGCAGGTTCGGGTaGAAGAGGTTTGGGTCCGGAGGGTGGCACGGGTGT | + |
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Preference number: 6 (lower is better) Translates to: LRCTKRGWSRFG*KRFGSGGWHGC Trigger: ACACCCGTGCCACCCTCCGGACCCAAACCTCTTGCACCCGAACCTGCTCCATCCCCGTTTGGTGCACCTGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 72 bp | CTGGACTGGGGCAGGCTCAGGTGCACCAAACGGGGATaGAGCAGGTTCGGGTGCAAGAGGTTTGGGTCCGGA | + |
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Preference number: 6 (lower is better) Translates to: LDWGRLRCTKRG*SRFGCKRFGSG Trigger: TCCGGACCCAAACCTCTTGCACCCGAACCTGCTCCATCCCCGTTTGGTGCACCTGAGCCTGCCCCAGTCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 72 bp | AGGCGGGATGCATCAGGGACAGCTGCCTCTAACTGGTaGGGGGCAGGCTCAGGTGCACCAAACTGGACTGGG | + |
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Preference number: 6 (lower is better) Translates to: RRDASGTAASNW*GAGSGAPNWTG Trigger: CCCAGTCCAGTTTGGTGCACCTGAGCCTGCCCCCCACCAGTTAGAGGCAGCTGTCCCTGATGCATCCCGCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 72 bp | GAGGTCGGCCTGCAGCAGATTCTGCTGCAGGAAGCTTaGCTTCAACAGCCAGGCCTGCAGCAGGCAAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: EVGLQQILLQEA*LQQPGLQQARL Trigger: CAGCCTTGCCTGCTGCAGGCCTGGCTGTTGAAGCCAAGCTTCCTGCAGCAGAATCTGCTGCAGGCCGACCTC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CAA 72 bp | GGAGGTCGGCCTGCAGCAGATTCTGCTGCAGGAAGCTaGGCTTCAACAGCCAGGCCTGCAGCAGGCAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: GGRPAADSAAGS*ASTARPAAGKA Trigger: AGCCTTGCCTGCTGCAGGCCTGGCTGTTGAAGCCAAGCTTCCTGCAGCAGAATCTGCTGCAGGCCGACCTCC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 72 bp | AGCAGGTTCGGGTGCAAGAGGTTTGGGTCCGGAGGGTaGCACGGGTGTTCCAAGTTTGACTGCCTGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: SRFGCKRFGSGG*HGCSKFDCLRQ Trigger: CTGCCTCAGGCAGTCAAACTTGGAACACCCGTGCCACCCTCCGGACCCAAACCTCTTGCACCCGAACCTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CAA 72 bp | CCAAACGGGGATGGAGCAGGTTCGGGTGCAAGAGGTTaGGGTCCGGAGGGTGGCACGGGTGTTCCAAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: PNGDGAGSGARG*GPEGGTGVPSL Trigger: CAAACTTGGAACACCCGTGCCACCCTCCGGACCCAAACCTCTTGCACCCGAACCTGCTCCATCCCCGTTTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 72 bp | GGGAGGAGGAAGAGGGGCGACTGGGGGACCATTCAATaGAGCATCAGCTGGGTAGTTGAGACTTTGGTATAC | + |
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Preference number: 6 (lower is better) Translates to: GRRKRGDWGTIQ*SISWVVETLVY Trigger: GTATACCAAAGTCTCAACTACCCAGCTGATGCTCCATTGAATGGTCCCCCAGTCGCCCCTCTTCCTCCTCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS TCA 72 bp | CCGGAGGGTGGCACGGGTGTTCCAAGTTTGACTGCCTaGGGCAGACCTAAAATAGGTTTGTCTACAGGGAAC | + |
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Preference number: 6 (lower is better) Translates to: PEGGTGVPSLTA*GRPKIGLSTGN Trigger: GTTCCCTGTAGACAAACCTATTTTAGGTCTGCCTCAGGCAGTCAAACTTGGAACACCCGTGCCACCCTCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CAA 72 bp | AGAGACTGTGTTGCAGCAGGCTCACCTGAAGTAGGTTaGTTTTCGGGAGACAGGCCTGCAGGGGATTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: RDCVAAGSPEVG*FSGDRPAGDSA Trigger: AGCTGAATCCCCTGCAGGCCTGTCTCCCGAAAACAAACCTACTTCAGGTGAGCCTGCTGCAACACAGTCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 72 bp | GTAGGCTCAGCTGTAATAAGTTTTCCCACAACAGACTaGCTCGCCATAAGTTCAGCTGGAGGAGGTCGGCCT | + |
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Preference number: 6 (lower is better) Translates to: VGSAVISFPTTD*LAISSAGGGRP Trigger: AGGCCGACCTCCTCCAGCTGAACTTATGGCGAGCCAGTCTGTTGTGGGAAAACTTATTACAGCTGAGCCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 72 bp | GATGACAGAAATCTTTGGAGGTATGACAAAGGGGTATaGCCTGGGAGGAAAGTGTTTGGGAGGAGGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: DDRNLWRYDKGV*PGRKVFGRRKR Trigger: CCTCTTCCTCCTCCCAAACACTTTCCTCCCAGGCCATACCCCTTTGTCATACCTCCAAAGATTTCTGTCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS TCA 72 bp | CATAGCAGGAACTGCTACGGGCTCAGGTCTAACAGGTaGGATGACAGAAATCTTTGGAGGTATGACAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: HSRNCYGLRSNR*DDRNLWRYDKG Trigger: CCCTTTGTCATACCTCCAAAGATTTCTGTCATCTCACCTGTTAGACCTGAGCCCGTAGCAGTTCCTGCTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CAA 90 bp | GACTGGGGGACCATTCAATGGAGCATCAGCTGGGTAGTTGAGACTTaGGTATACATAGCGAAGTTTAGAAGGAGTGGCAATCCAAGGATA | + |
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Preference number: 6 (lower is better) Translates to: DWGTIQWSISWVVET*VYIAKFRRSGNPRI Trigger: TATCCTTGGATTGCCACTCCTTCTAAACTTCGCTATGTATACCAAAGTCTCAACTACCCAGCTGATGCTCCATTGAATGGTCCCCCAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS CCA 72 bp | GCTGGCAGATTTGGCCTCAACAGGCTCAAGTACCTGTaGTTTTGCTTCAGTAGGCTCAGCTGTAATAAGTTT | + |
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Preference number: 6 (lower is better) Translates to: AGRFGLNRLKYL*FCFSRLSCNKF Trigger: AAACTTATTACAGCTGAGCCTACTGAAGCAAAACCACAGGTACTTGAGCCTGTTGAGGCCAAATCTGCCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS TCA 72 bp | GCGATTTCCAAAGTAATCCTCTTCAGTGGACGAGGGTaGTTTCCTCTTTGCAAAAGCGACACACATGATGCA | + |
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Preference number: 6 (lower is better) Translates to: AISKVILFSGRG*FPLCKSDTHDA Trigger: TGCATCATGTGTGTCGCTTTTGCAAAGAGGAAATCACCCTCGTCCACTGAAGAGGATTACTTTGGAAATCGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002310.8 |
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| CDS GCA 72 bp | AGATTTGGCCTCAACAGGCTCAAGTACCTGTGGTTTTaGTTCAGTAGGCTCAGCTGTAATAAGTTTTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: RFGLNRLKYLWF*FSRLSCNKFSH Trigger: GTGGGAAAACTTATTACAGCTGAGCCTACTGAAGCAAAACCACAGGTACTTGAGCCTGTTGAGGCCAAATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002310.8 ENSMUST00000101056.8 |
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| CDS TCA 72 bp | AATCCTCTTCAGTGGACGAGGGTGATTTCTTATGAATaGAAGGATAACGTCTCCTCTTTGCAAAAGCGACAC | + |
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Preference number: 6 (lower is better) Translates to: NPLQWTRVISYE*KDNVSSLQKRH Trigger: GTGTCGCTTTTGCAAAGAGGAGACGTTATCCTTTCATTCATAAGAAATCACCCTCGTCCACTGAAGAGGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101056.8 |
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