Pregenerated sensors for PRR23A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091080Ensembl transcript IDs: ENSMUST00000170349.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGCGGGCTCGGCGGGCGCTTCCAGCTCTGGCTGAGCCAGGGGCTCTaGGCACGCGGGCTCCTGGTGGAGGCGGCGGCGCTTGGCAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: SGLGGRFQLWLSQGL*ARGLLVEAAALGRA Trigger: AGCCCTGCCAAGCGCCGCCGCCTCCACCAGGAGCCCGCGTGCCCAGAGCCCCTGGCTCAGCCAGAGCTGGAAGCGCCCGCCGAGCCCGCT 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CCA 90 bp | TCGCTTCCGGGCCTTGCAAGGAGCCCGGGGAGAGCATGGAGGGCGTaGCGGAAGCTGCTCTTGGGGACTCTGGGAAGGAGATGGAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: SLPGLARSPGRAWRA*RKLLLGTLGRRWRQ Trigger: CTGCCTCCATCTCCTTCCCAGAGTCCCCAAGAGCAGCTTCCGCCACGCCCTCCATGCTCTCCCCGGGCTCCTTGCAAGGCCCGGAAGCGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CCA 90 bp | CAAGGAGCCCGGGGAGAGCATGGAGGGCGTGGCGGAAGCTGCTCTTaGGGACTCTGGGAAGGAGATGGAGGCAGAGGCTGCAGTGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: QGARGEHGGRGGSCS*GLWEGDGGRGCSGE Trigger: CTCACCACTGCAGCCTCTGCCTCCATCTCCTTCCCAGAGTCCCCAAGAGCAGCTTCCGCCACGCCCTCCATGCTCTCCCCGGGCTCCTTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CCA 90 bp | GGAAGGCCCTGGGACTTGTTCCTGCAACAAAGGACTGGGCACCCCTaGGATGGAGGAAAAGTTCCCATTGGCCTGATCATCTGGAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: GRPWDLFLQQRTGHP*DGGKVPIGLIIWRP Trigger: AGGCCTCCAGATGATCAGGCCAATGGGAACTTTTCCTCCATCCCAGGGGTGCCCAGTCCTTTGTTGCAGGAACAAGTCCCAGGGCCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS GCA 90 bp | GGAGAATATCGCTCTGCTCCAGTGGAAGGCCCTGGGACTTGTTCCTaGAACAAAGGACTGGGCACCCCTGGGATGGAGGAAAAGTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: GEYRSAPVEGPGTCS*NKGLGTPGMEEKFP Trigger: TGGGAACTTTTCCTCCATCCCAGGGGTGCCCAGTCCTTTGTTGCAGGAACAAGTCCCAGGGCCTTCCACTGGAGCAGAGCGATATTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS TCA 90 bp | AAAGGACTGGGCACCCCTGGGATGGAGGAAAAGTTCCCATTGGCCTaGTCATCTGGAGGCCTAGCCCAGGGTTCCAGCAATTCCAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: KGLGTPGMEEKFPLA*SSGGLAQGSSNSKS Trigger: AGACTTGGAATTGCTGGAACCCTGGGCTAGGCCTCCAGATGATCAGGCCAATGGGAACTTTTCCTCCATCCCAGGGGTGCCCAGTCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CCA 72 bp | GGCGGGCGCTTCCAGCTCTGGCTGAGCCAGGGGCTCTaGGCACGCGGGCTCCTGGTGGAGGCGGCGGCGCTT | + |
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Preference number: 6 (lower is better) Translates to: GGRFQLWLSQGL*ARGLLVEAAAL Trigger: AAGCGCCGCCGCCTCCACCAGGAGCCCGCGTGCCCAGAGCCCCTGGCTCAGCCAGAGCTGGAAGCGCCCGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS GCA 72 bp | GGAGCCCGGGGAGAGCATGGAGGGCGTGGCGGAAGCTaGTCTTGGGGACTCTGGGAAGGAGATGGAGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: GARGEHGGRGGS*SWGLWEGDGGR Trigger: TCTGCCTCCATCTCCTTCCCAGAGTCCCCAAGAGCAGCTTCCGCCACGCCCTCCATGCTCTCCCCGGGCTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CCA 72 bp | GGCCTTGCAAGGAGCCCGGGGAGAGCATGGAGGGCGTaGCGGAAGCTGCTCTTGGGGACTCTGGGAAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: GLARSPGRAWRA*RKLLLGTLGRR Trigger: TCTCCTTCCCAGAGTCCCCAAGAGCAGCTTCCGCCACGCCCTCCATGCTCTCCCCGGGCTCCTTGCAAGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CAA 72 bp | CCGGGGAGAGCATGGAGGGCGTGGCGGAAGCTGCTCTaGGGGACTCTGGGAAGGAGATGGAGGCAGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PGRAWRAWRKLL*GTLGRRWRQRL Trigger: CAGCCTCTGCCTCCATCTCCTTCCCAGAGTCCCCAAGAGCAGCTTCCGCCACGCCCTCCATGCTCTCCCCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CAA 90 bp | GAGTCCTTCGGGGACCAGGAGGATGGTGTGTTCTTGGAGCGACACTaGCAGGACCGAGGTGGGCTCAGGCTCCAACAGCAGGTCGATGCC | + |
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Preference number: 6 (lower is better) Translates to: ESFGDQEDGVFLERH*QDRGGLRLQQQVDA Trigger: GGCATCGACCTGCTGTTGGAGCCTGAGCCCACCTCGGTCCTGCAAGTGTCGCTCCAAGAACACACCATCCTCCTGGTCCCCGAAGGACTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CAA 72 bp | GGGGACCAGGAGGATGGTGTGTTCTTGGAGCGACACTaGCAGGACCGAGGTGGGCTCAGGCTCCAACAGCAG | + |
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Preference number: 6 (lower is better) Translates to: GDQEDGVFLERH*QDRGGLRLQQQ Trigger: CTGCTGTTGGAGCCTGAGCCCACCTCGGTCCTGCAAGTGTCGCTCCAAGAACACACCATCCTCCTGGTCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS GCA 72 bp | CGCTCTGCTCCAGTGGAAGGCCCTGGGACTTGTTCCTaGAACAAAGGACTGGGCACCCCTGGGATGGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: RSAPVEGPGTCS*NKGLGTPGMEE Trigger: TTCCTCCATCCCAGGGGTGCCCAGTCCTTTGTTGCAGGAACAAGTCCCAGGGCCTTCCACTGGAGCAGAGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CCA 72 bp | TGGTGTGTTCTTGGAGCGACACTTGCAGGACCGAGGTaGGCTCAGGCTCCAACAGCAGGTCGATGCCATCCA | + |
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Preference number: 6 (lower is better) Translates to: WCVLGATLAGPR*AQAPTAGRCHP Trigger: TGGATGGCATCGACCTGCTGTTGGAGCCTGAGCCCACCTCGGTCCTGCAAGTGTCGCTCCAAGAACACACCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CAA 72 bp | AGAATATCGCTCTGCTCCAGTGGAAGGCCCTGGGACTaGTTCCTGCAACAAAGGACTGGGCACCCCTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: RISLCSSGRPWD*FLQQRTGHPWD Trigger: ATCCCAGGGGTGCCCAGTCCTTTGTTGCAGGAACAAGTCCCAGGGCCTTCCACTGGAGCAGAGCGATATTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CAA 90 bp | AAACCTAGGAGAATATCGCTCTGCTCCAGTGGAAGGCCCTGGGACTaGTTCCTGCAACAAAGGACTGGGCACCCCTGGGATGGAGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: KPRRISLCSSGRPWD*FLQQRTGHPWDGGK Trigger: TTTTCCTCCATCCCAGGGGTGCCCAGTCCTTTGTTGCAGGAACAAGTCCCAGGGCCTTCCACTGGAGCAGAGCGATATTCTCCTAGGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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| CDS CAA 72 bp | CAATTCCAAGTCTGCATCCTCATCACAGACATCTTCTaGGTAGAAGTACTCACAGAAGGTTTCCTCCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: QFQVCILITDIF*VEVLTEGFLLE Trigger: CTCCAGGAGGAAACCTTCTGTGAGTACTTCTACCAAGAAGATGTCTGTGATGAGGATGCAGACTTGGAATTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170349.3 |
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