Pregenerated sensors for PRR15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045725Ensembl transcript IDs: ENSMUST00000059138.6
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTTTGCTCTCCACAGTCCTCAGTACGAACACTCAGTTCCTTATTTaGGAAGCAGGAAGAGGGGTCACCTACTTATGGCCTCTGAAATAC | + |
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Preference number: 1 (lower is better) Translates to: PLLSTVLSTNTQFLI*EAGRGVTYLWPLKY Trigger: GTATTTCAGAGGCCATAAGTAGGTGACCCCTCTTCCTGCTTCTCAAATAAGGAACTGAGTGTTCGTACTGAGGACTGTGGAGAGCAAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| 3UTR-3UTR CCA 90 bp | CTGTCCTTTGCTCTCCACAGTCCTCAGTACGAACACTCAGTTCCTTATTTGAGAGGGGTCACCTACTTATaGCCTCTGAAATACCCATCC | + |
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Preference number: 2 (lower is better) Translates to: LSFALHSPQYEHSVPYLRGVTYL*PLKYPS Trigger: GGATGGGTATTTCAGAGGCCATAAGTAGGTGACCCC...TCTCAAATAAGGAACTGAGTGTTCGTACTGAGGACTGTGGAGAGCAAAGGACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| 3UTR CAA 90 bp | TCCTTTGCTCTCCACAGTCCTCAGTACGAACACTCAGTTCCTTATTaGAGAAGCAGGAAGAGGGGTCACCTACTTATGGCCTCTGAAATA | + |
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Preference number: 2 (lower is better) Translates to: SFALHSPQYEHSVPY*RSRKRGHLLMASEI Trigger: TATTTCAGAGGCCATAAGTAGGTGACCCCTCTTCCTGCTTCTCAAATAAGGAACTGAGTGTTCGTACTGAGGACTGTGGAGAGCAAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| 3UTR-3UTR GCA 90 bp | AAAAATACTTACTCAGTCTCTGAGTCATGGAATTTTGAGGCCTCAGCTGACACTGTTTTTCTCTTTCTGTaGAATCCTGGAAGCTTGTTC | + |
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Preference number: 2 (lower is better) Translates to: KNTYSVSESWNFEASADTVFLFL*NPGSLF Trigger: GAACAAGCTTCCAGGATTGCACAGAAAGAGAAAAAC...AGTGTCAGCTGAGGCCTCAAAATTCCATGACTCAGAGACTGAGTAAGTATTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| 3UTR TCA 72 bp | TCCACAGTCCTCAGTACGAACACTCAGTTCCTTATTTaGGAAGCAGGAAGAGGGGTCACCTACTTATGGCCT | + |
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Preference number: 3 (lower is better) Translates to: STVLSTNTQFLI*EAGRGVTYLWP Trigger: AGGCCATAAGTAGGTGACCCCTCTTCCTGCTTCTCAAATAAGGAACTGAGTGTTCGTACTGAGGACTGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR CCA 90 bp | GAACACTCAGTTCCTTATTTGAGAAGCAGGAAGAGGGGTCACCTACTTATGGCCTTCCTGGCCAGTCTCTaGCCGAACCTGAGGCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: EHSVPYLRSRKRGHLLMAFLASL*PNLRLH Trigger: GTGCAGCCTCAGGTTCGGCCAGAGACTGGCCAGGAA...GGCCATAAGTAGGTGACCCCTCTTCCTGCTTCTCAAATAAGGAACTGAGTGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR TCA 90 bp | TTTGCTCTCCACAGTCCTCAGTACGAACACTCAGTTCCTTATTTGAGAAGCAGGCTCACACAACTTATCTaGCCTGAGGGACTCTCCGGG | + |
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Preference number: 4 (lower is better) Translates to: FALHSPQYEHSVPYLRSRLTQLI*PEGLSG Trigger: CCCGGAGAGTCCCTCAGGTCAGATAAGTTGTGTGAG...CCTGCTTCTCAAATAAGGAACTGAGTGTTCGTACTGAGGACTGTGGAGAGCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| 3UTR CAA 72 bp | CTCCACAGTCCTCAGTACGAACACTCAGTTCCTTATTaGAGAAGCAGGAAGAGGGGTCACCTACTTATGGCC | + |
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Preference number: 4 (lower is better) Translates to: LHSPQYEHSVPY*RSRKRGHLLMA Trigger: GGCCATAAGTAGGTGACCCCTCTTCCTGCTTCTCAAATAAGGAACTGAGTGTTCGTACTGAGGACTGTGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR CCA 90 bp | TTTGCTCTCCACAGTCCTCAGTACGAACACTCAGTTCCTTATTTGAGAAGCAGGGGAGTGCTGATTTTCTaGCAAGCTGCTAGTCCGATC | + |
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Preference number: 4 (lower is better) Translates to: FALHSPQYEHSVPYLRSRGVLIF*QAASPI Trigger: GATCGGACTAGCAGCTTGCCAGAAAATCAGCACTCC...CCTGCTTCTCAAATAAGGAACTGAGTGTTCGTACTGAGGACTGTGGAGAGCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR CCA 90 bp | ACCCATCCAGCCTTGTCATTGCCACAGGTGACACCTCCGAATGACTTTTGTAAAGGTCCCCAAGGATATTaGAGTGCTGATTTTCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: THPALSLPQVTPPNDFCKGPQGY*SADFLA Trigger: TGCCAGAAAATCAGCACTCCAATATCCTTGGGGACC...TTTACAAAAGTCATTCGGAGGTGTCACCTGTGGCAATGACAAGGCTGGATGGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR CCA 90 bp | CTGTCCTTTGCTCTCCACAGTCCTCAGTACGAACACTCAGTTCCTTATTTGAGACTTCAGGGAGCAGTGTaGCACGCATTTTCCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LSFALHSPQYEHSVPYLRLQGAV*HAFSSS Trigger: AGAAGAGGAAAATGCGTGCCACACTGCTCCCTGAAG...TCTCAAATAAGGAACTGAGTGTTCGTACTGAGGACTGTGGAGAGCAAAGGACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR TCA 90 bp | TTTGCTCTCCACAGTCCTCAGTACGAACACTCAGTTCCTTATTTGAGAAGCAGGTATTGCTTGTCCTCCTaGGGGTCATCTGGAAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: FALHSPQYEHSVPYLRSRYCLSS*GSSGKS Trigger: TGACTTTCCAGATGACCCTCAGGAGGACAAGCAATA...CCTGCTTCTCAAATAAGGAACTGAGTGTTCGTACTGAGGACTGTGGAGAGCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR CCA 90 bp | AACTTGGGTGAAGCATCAAGTACTGGGTCTAGGGGTAATAGTGTTTTTCTCTTTCTCCTGAGGGTCATCTaGAAAGTCAGCCTCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: NLGEASSTGSRGNSVFLFLLRVI*KVSLLR Trigger: CCTGAGGAGGCTGACTTTCCAGATGACCCTCAGGAG...AAAGAGAAAAACACTATTACCCCTAGACCCAGTACTTGATGCTTCACCCAAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR GCA 90 bp | GGTGAAGCATCAAGTACTGGGTCTAGGGGTAATAGTGTTTTTCTCTTTCTGTGCAATTGCGCCGACTATTaGCTGTTTTCTCCTCACACA | + |
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Preference number: 4 (lower is better) Translates to: GEASSTGSRGNSVFLFLCNCADY*LFSPHT Trigger: TGTGTGAGGAGAAAACAGGCAATAGTCGGCGCAATT...GCACAGAAAGAGAAAAACACTATTACCCCTAGACCCAGTACTTGATGCTTCACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| 3UTR CAA 72 bp | AATCTTGAAGGCCTTAGTCAACTGCATACTCTGAACTaGGGTGAAGCATCAAGTACTGGGTCTAGGGGTAAT | + |
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Preference number: 4 (lower is better) Translates to: NLEGLSQLHTLN*GEASSTGSRGN Trigger: ATTACCCCTAGACCCAGTACTTGATGCTTCACCCAAGTTCAGAGTATGCAGTTGACTAAGGCCTTCAAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR CCA 90 bp | AACTTGGGTGAAGCATCAAGTACTGGGTCTAGGGGTAATAGTGTTTTTCTCTTTCCTTGCTTTTCTTCCTaGTCAGAGATTTCCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: NLGEASSTGSRGNSVFLFPCFSS*SEISTR Trigger: CCTGGTGGAAATCTCTGACCAGGAAGAAAAGCAAGG...AAAGAGAAAAACACTATTACCCCTAGACCCAGTACTTGATGCTTCACCCAAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS TCA 90 bp | TGTCTCCTTCAGGGAGCAGTGTGGCACGCATTTTCCTCTTCTCCTTaGATCTGCCAGAGCGTGAGATCTTCAAATTGCGCCGACTATTGC | + |
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Preference number: 5 (lower is better) Translates to: CLLQGAVWHAFSSSP*ICQSVRSSNCADYC Trigger: GCAATAGTCGGCGCAATTTGAAGATCTCACGCTCTGGCAGATTCAAGGAGAAGAGGAAAATGCGTGCCACACTGCTCCCTGAAGGAGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS TCA 90 bp | CAGTGTGGCACGCATTTTCCTCTTCTCCTTGAATCTGCCAGAGCGTaGGATCTTCAAATTGCGCCGACTATTGCCTGTTTTCTCCTCACA | + |
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Preference number: 5 (lower is better) Translates to: QCGTHFPLLLESARA*DLQIAPTIACFLLT Trigger: TGTGAGGAGAAAACAGGCAATAGTCGGCGCAATTTGAAGATCTCACGCTCTGGCAGATTCAAGGAGAAGAGGAAAATGCGTGCCACACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS-3UTR CAA 90 bp | ATACTTACTCAGTCTCTGAGTCATGGAATTTTGAGGCCTCAGCTGACACTTCACATTTTCCTCTTCTCCTaGAATCTGCCAGAGCGTGAG | + |
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Preference number: 5 (lower is better) Translates to: ILTQSLSHGILRPQLTLHIFLFS*NLPERE Trigger: CTCACGCTCTGGCAGATTCAAGGAGAAGAGGAAAAT...GTGAAGTGTCAGCTGAGGCCTCAAAATTCCATGACTCAGAGACTGAGTAAGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS TCA 72 bp | GGTGGTGAGGGTTCCTGGCCAGTCTCTGGCCGAACCTaGGGCTGCACCCCCACCGTAACTTCCTTGCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: GGEGSWPVSGRT*GCTPTVTSLLF Trigger: GAAAAGCAAGGAAGTTACGGTGGGGGTGCAGCCTCAGGTTCGGCCAGAGACTGGCCAGGAACCCTCACCACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS TCA 72 bp | CAGGGAGCAGTGTGGCACGCATTTTCCTCTTCTCCTTaGATCTGCCAGAGCGTGAGATCTTCAAATTGCGCC | + |
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Preference number: 6 (lower is better) Translates to: QGAVWHAFSSSP*ICQSVRSSNCA Trigger: GGCGCAATTTGAAGATCTCACGCTCTGGCAGATTCAAGGAGAAGAGGAAAATGCGTGCCACACTGCTCCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS CAA 72 bp | TCAGGGAGCAGTGTGGCACGCATTTTCCTCTTCTCCTaGAATCTGCCAGAGCGTGAGATCTTCAAATTGCGC | + |
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Preference number: 6 (lower is better) Translates to: SGSSVARIFLFS*NLPEREIFKLR Trigger: GCGCAATTTGAAGATCTCACGCTCTGGCAGATTCAAGGAGAAGAGGAAAATGCGTGCCACACTGCTCCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS CAA 90 bp | TTGTCTCCTTCAGGGAGCAGTGTGGCACGCATTTTCCTCTTCTCCTaGAATCTGCCAGAGCGTGAGATCTTCAAATTGCGCCGACTATTG | + |
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Preference number: 6 (lower is better) Translates to: LSPSGSSVARIFLFS*NLPEREIFKLRRLL Trigger: CAATAGTCGGCGCAATTTGAAGATCTCACGCTCTGGCAGATTCAAGGAGAAGAGGAAAATGCGTGCCACACTGCTCCCTGAAGGAGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS CAA 72 bp | TTCTCCTTGAATCTGCCAGAGCGTGAGATCTTCAAATaGCGCCGACTATTGCCTGTTTTCTCCTCACACAAC | + |
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Preference number: 6 (lower is better) Translates to: FSLNLPEREIFK*RRLLPVFSSHN Trigger: GTTGTGTGAGGAGAAAACAGGCAATAGTCGGCGCAATTTGAAGATCTCACGCTCTGGCAGATTCAAGGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS TCA 72 bp | ACGCATTTTCCTCTTCTCCTTGAATCTGCCAGAGCGTaGGATCTTCAAATTGCGCCGACTATTGCCTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: THFPLLLESARA*DLQIAPTIACF Trigger: AAAACAGGCAATAGTCGGCGCAATTTGAAGATCTCACGCTCTGGCAGATTCAAGGAGAAGAGGAAAATGCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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| CDS CAA 90 bp | ATTTTCCTCTTCTCCTTGAATCTGCCAGAGCGTGAGATCTTCAAATaGCGCCGACTATTGCCTGTTTTCTCCTCACACAACTTATCTGAC | + |
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Preference number: 6 (lower is better) Translates to: IFLFSLNLPEREIFK*RRLLPVFSSHNLSD Trigger: GTCAGATAAGTTGTGTGAGGAGAAAACAGGCAATAGTCGGCGCAATTTGAAGATCTCACGCTCTGGCAGATTCAAGGAGAAGAGGAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059138.6 |
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