Pregenerated sensors for PRR13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023048Ensembl transcript IDs: ENSMUST00000023810.12, ENSMUST00000164688.2, ENSMUST00000164957.8, ENSMUST00000171245.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTTTCCAGCAGCTCGACAGTTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTTACGAGGATGACAGCTaGAGCTTGGTGGGAGAGTGG | + |
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Preference number: 2 (lower is better) Translates to: LSSSSTVTEIQKPCREHSYEDDS*SLVGEW Trigger: CCACTCTCCCACCAAGCTTCAGCTGTCATCCTCGTA...ACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAACTGTCGAGCTGCTGGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR-3UTR TCA 90 bp | AGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACATACGAGGATGACAGCTaGAGCTTGGTGGGAGAGTGG | + |
|
Preference number: 2 (lower is better) Translates to: SPAGNTVAIKSLSCAAITYEDDS*SLVGEW Trigger: CCACTCTCCCACCAAGCTTCAGCTGTCATCCTCGTA...TGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACAACAGCTGAAGCTTGGTaGGAGAGTGGAGCTGGTGAG | + |
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Preference number: 2 (lower is better) Translates to: SPAGNTVAIKSLSCAAITTAEAW*ESGAGE Trigger: CTCACCAGCTCCACTCTCCCACCAAGCTTCAGCTGT...TGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR-3UTR CCA 90 bp | TTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCAACAGCTGAAGCTTGGTaGGAGAGTGGAGCTGGTGAG | + |
|
Preference number: 2 (lower is better) Translates to: LLRSKSPAGNTVAIKSLSTAEAW*ESGAGE Trigger: CTCACCAGCTCCACTCTCCCACCAAGCTTCAGCTGT...TGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR-3UTR TCA 90 bp | GCCGCCATTACAAAAGTAGAGGTTTTTCATCACAAACTGTCACAAACCCAAGTCTACGAGGATGACAGCTaGAGCTTGGTGGGAGAGTGG | + |
|
Preference number: 2 (lower is better) Translates to: AAITKVEVFHHKLSQTQVYEDDS*SLVGEW Trigger: CCACTCTCCCACCAAGCTTCAGCTGTCATCCTCGTA...GACTTGGGTTTGTGACAGTTTGTGATGAAAAACCTCTACTTTTGTAATGGCGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR-3UTR GCA 90 bp | AGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACACAGATCTTAAAATGGTaGTCCCCATTTAGCTCAGAG | + |
|
Preference number: 2 (lower is better) Translates to: SPAGNTVAIKSLSCAAITQILKW*SPFSSE Trigger: CTCTGAGCTAAATGGGGAGCACCATTTTAAGATCTG...TGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACAGTGCAGATCTTAAAATaGTGCTCCCCATTTAGCTCA | + |
|
Preference number: 2 (lower is better) Translates to: SPAGNTVAIKSLSCAAITVQILK*CSPFSS Trigger: TGAGCTAAATGGGGAGCACCATTTTAAGATCTGCAC...TGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGAGACTGCACTTTCCAGCAGCTCGACAGTTACTGAGATCCAAAAGCCCTGCGTGCAGATCTTAAAATaGTGCTCCCCATTTAGCTCA | + |
|
Preference number: 2 (lower is better) Translates to: KETALSSSSTVTEIQKPCVQILK*CSPFSS Trigger: TGAGCTAAATGGGGAGCACCATTTTAAGATCTGCAC...GCAGGGCTTTTGGATCTCAGTAACTGTCGAGCTGCTGGAAAGTGCAGTCTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR-3UTR GCA 90 bp | GCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACAAAAGTACAGATCTTAAAATGGTaGTCCCCATTTAGCTCAGAG | + |
|
Preference number: 2 (lower is better) Translates to: AGNTVAIKSLSCAAITKVQILKW*SPFSSE Trigger: CTCTGAGCTAAATGGGGAGCACCATTTTAAGATCTG...TACTTTTGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
||
| 3UTR-3UTR CCA 90 bp | TTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCAGTGCAGATCTTAAAATaGTGCTCCCCATTTAGCTCA | + |
|
Preference number: 2 (lower is better) Translates to: LLRSKSPAGNTVAIKSLSVQILK*CSPFSS Trigger: TGAGCTAAATGGGGAGCACCATTTTAAGATCTGCAC...TGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR-3UTR GCA 90 bp | GCCGCCATTACAAAAGTAGAGGTTTTTCATCACAAACTGTCACAAACCCAAGTCCAGATCTTAAAATGGTaGTCCCCATTTAGCTCAGAG | + |
|
Preference number: 2 (lower is better) Translates to: AAITKVEVFHHKLSQTQVQILKW*SPFSSE Trigger: CTCTGAGCTAAATGGGGAGCACCATTTTAAGATCTG...GACTTGGGTTTGTGACAGTTTGTGATGAAAAACCTCTACTTTTGTAATGGCGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR TCA 72 bp | GAGCAGAGGGCTAATGCCCCTCACTCCGTACGAGGATaGCAGCTGAAGCTTGGTGGGAGAGTGGAGCTGGTG | + |
|
Preference number: 3 (lower is better) Translates to: EQRANAPHSVRG*QLKLGGRVELV Trigger: CACCAGCTCCACTCTCCCACCAAGCTTCAGCTGTCATCCTCGTACGGAGTGAGGGGCATTAGCCCTCTGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| 3UTR TCA 72 bp | ATCAAGAAGGCCGCTTTGCTTTTGCTAGCTAGCCCTTaGCAGCCGGGACAGAACAGCAGGGGAAGGCACAGG | + |
|
Preference number: 3 (lower is better) Translates to: IKKAALLLLASP*QPGQNSRGRHR Trigger: CCTGTGCCTTCCCCTGCTGTTCTGTCCCGGCTGTCAAGGGCTAGCTAGCAAAAGCAAAGCGGCCTTCTTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | CCCTCACTCCGTACGAGGATGACAGCTGAAGCTTGGTGGGAGAGTGGAGCTGGTAAAGCTGGGTTTCCCTaGGGAATTCCGGGAGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: PSLRTRMTAEAWWESGAGKAGFP*GIPGGQ Trigger: CTGTCCTCCCGGAATTCCCCAGGGAAACCCAGCTTT...ACCAGCTCCACTCTCCCACCAAGCTTCAGCTGTCATCCTCGTACGGAGTGAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | CCCTCACTCCGTACGAGGATGACAGCTGAAGCTTGGTGGGAGAGTGGAGCTGGTTGGACACCCTGGTTGTaGTACAGGATAAGGGGGACG | + |
|
Preference number: 4 (lower is better) Translates to: PSLRTRMTAEAWWESGAGWTPWL*YRIRGT Trigger: CGTCCCCCTTATCCTGTACCACAACCAGGGTGTCCA...ACCAGCTCCACTCTCCCACCAAGCTTCAGCTGTCATCCTCGTACGGAGTGAGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | AGTGGGGCAGGGAGCAGAGGGCTAATGCCCCTCACTCCGTACGAGGATGACAGCGTATCCTGGACACCCTaGTTGTGGTACAGGATAAGG | + |
|
Preference number: 4 (lower is better) Translates to: SGAGSRGLMPLTPYEDDSVSWTP*LWYRIR Trigger: CCTTATCCTGTACCACAACCAGGGTGTCCAGGATAC...GCTGTCATCCTCGTACGGAGTGAGGGGCATTAGCCCTCTGCTCCCTGCCCCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR TCA 90 bp | CTTTCCAGCAGCTCGACAGTTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTGGGGAAAGGCAGGATTaGGAGGTGGTGGACAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LSSSSTVTEIQKPCREHSGERQD*EVVDRQ Trigger: CTGCCTGTCCACCACCTCTCAATCCTGCCTTTCCCC...ACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAACTGTCGAGCTGCTGGAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR GCA 90 bp | CTTTCCAGCAGCTCGACAGTTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTTTCCGGGACCCACCATaGCAGGAGCCGGAGGATTCA | + |
|
Preference number: 4 (lower is better) Translates to: LSSSSTVTEIQKPCREHSFRDPP*QEPEDS Trigger: TGAATCCTCCGGCTCCTGGCATGGTGGGTCCCGGAA...ACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAACTGTCGAGCTGCTGGAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | CTTTCCAGCAGCTCGACAGTTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTCATGCCAGGAGCAGGTaGTGGGTATGGGGGAGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: LSSSSTVTEIQKPCREHSHARSR*WVWGRV Trigger: TACCCTCCCCCATACCCACCACCTGCTCCTGGCATG...ACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAACTGTCGAGCTGCTGGAAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR TCA 90 bp | AGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACAGGGGAAAGGCAGGATTaGGAGGTGGTGGACAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: SPAGNTVAIKSLSCAAITGERQD*EVVDRQ Trigger: CTGCCTGTCCACCACCTCTCAATCCTGCCTTTCCCC...TGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR GCA 90 bp | AGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACATTCCGGGACCCACCATaGCAGGAGCCGGAGGATTCA | + |
|
Preference number: 4 (lower is better) Translates to: SPAGNTVAIKSLSCAAITFRDPP*QEPEDS Trigger: TGAATCCTCCGGCTCCTGGCATGGTGGGTCCCGGAA...TGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | AGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACACATGCCAGGAGCAGGTaGTGGGTATGGGGGAGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SPAGNTVAIKSLSCAAITHARSR*WVWGRV Trigger: TACCCTCCCCCATACCCACCACCTGCTCCTGGCATG...TGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | CCCTCACTCCGTACGAGGATGACAGCTGAAGCTTGGTGGGAGAGTGGAGCTGGTAACTTGGGGTGGATATaGATTCGGTCCAGCATTAGG | + |
|
Preference number: 4 (lower is better) Translates to: PSLRTRMTAEAWWESGAGNLGWI*IRSSIR Trigger: CCTAATGCTGGACCGAATCCATATCCACCCCAAGTT...ACCAGCTCCACTCTCCCACCAAGCTTCAGCTGTCATCCTCGTACGGAGTGAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | AAAGAGACTGCACTTTCCAGCAGCTCGACAGTTACTGAGATCCAAAAGCCCTGCCATGCCAGGAGCAGGTaGTGGGTATGGGGGAGGGTA | + |
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Preference number: 4 (lower is better) Translates to: KETALSSSSTVTEIQKPCHARSR*WVWGRV Trigger: TACCCTCCCCCATACCCACCACCTGCTCCTGGCATG...GCAGGGCTTTTGGATCTCAGTAACTGTCGAGCTGCTGGAAAGTGCAGTCTCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | CTTTCCAGCAGCTCGACAGTTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTCCTGGGCACACAACTTaGGGTGGATATGGATTCGGT | + |
|
Preference number: 4 (lower is better) Translates to: LSSSSTVTEIQKPCREHSPGHTT*GGYGFG Trigger: ACCGAATCCATATCCACCCCAAGTTGTGTGCCCAGG...ACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAACTGTCGAGCTGCTGGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR TCA 90 bp | GCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACAAAAGTAGGGGAAAGGCAGGATTaGGAGGTGGTGGACAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: AGNTVAIKSLSCAAITKVGERQD*EVVDRQ Trigger: CTGCCTGTCCACCACCTCTCAATCCTGCCTTTCCCC...TACTTTTGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | AAAGAGACTGCACTTTCCAGCAGCTCGACAGTTACTGAGATCCAAAAGCCCTGCTGGACACCCTGGTTGTaGTACAGGATAAGGGGGACG | + |
|
Preference number: 4 (lower is better) Translates to: KETALSSSSTVTEIQKPCWTPWL*YRIRGT Trigger: CGTCCCCCTTATCCTGTACCACAACCAGGGTGTCCA...GCAGGGCTTTTGGATCTCAGTAACTGTCGAGCTGCTGGAAAGTGCAGTCTCTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | TTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCACATGCCAGGAGCAGGTaGTGGGTATGGGGGAGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: LLRSKSPAGNTVAIKSLSHARSR*WVWGRV Trigger: TACCCTCCCCCATACCCACCACCTGCTCCTGGCATG...TGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | CTTTCCAGCAGCTCGACAGTTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTAACTTGGGGTGGATATaGATTCGGTCCAGCATTAGG | + |
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Preference number: 4 (lower is better) Translates to: LSSSSTVTEIQKPCREHSNLGWI*IRSSIR Trigger: CCTAATGCTGGACCGAATCCATATCCACCCCAAGTT...ACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAACTGTCGAGCTGCTGGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR TCA 90 bp | GCCGCCATTACAAAAGTAGAGGTTTTTCATCACAAACTGTCACAAACCCAAGTCGGGGAAAGGCAGGATTaGGAGGTGGTGGACAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: AAITKVEVFHHKLSQTQVGERQD*EVVDRQ Trigger: CTGCCTGTCCACCACCTCTCAATCCTGCCTTTCCCC...GACTTGGGTTTGTGACAGTTTGTGATGAAAAACCTCTACTTTTGTAATGGCGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR GCA 90 bp | GCCGCCATTACAAAAGTAGAGGTTTTTCATCACAAACTGTCACAAACCCAAGTCTTCCGGGACCCACCATaGCAGGAGCCGGAGGATTCA | + |
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Preference number: 4 (lower is better) Translates to: AAITKVEVFHHKLSQTQVFRDPP*QEPEDS Trigger: TGAATCCTCCGGCTCCTGGCATGGTGGGTCCCGGAA...GACTTGGGTTTGTGACAGTTTGTGATGAAAAACCTCTACTTTTGTAATGGCGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | AGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACAAACTTGGGGTGGATATaGATTCGGTCCAGCATTAGG | + |
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Preference number: 4 (lower is better) Translates to: SPAGNTVAIKSLSCAAITNLGWI*IRSSIR Trigger: CCTAATGCTGGACCGAATCCATATCCACCCCAAGTT...TGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | GCCGCCATTACAAAAGTAGAGGTTTTTCATCACAAACTGTCACAAACCCAAGTCAAAGCTGGGTTTCCCTaGGGAATTCCGGGAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: AAITKVEVFHHKLSQTQVKAGFP*GIPGGQ Trigger: CTGTCCTCCCGGAATTCCCCAGGGAAACCCAGCTTT...GACTTGGGTTTGTGACAGTTTGTGATGAAAAACCTCTACTTTTGTAATGGCGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | GCCGCCATTACAAAAGTAGAGGTTTTTCATCACAAACTGTCACAAACCCAAGTCTGGACACCCTGGTTGTaGTACAGGATAAGGGGGACG | + |
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Preference number: 4 (lower is better) Translates to: AAITKVEVFHHKLSQTQVWTPWL*YRIRGT Trigger: CGTCCCCCTTATCCTGTACCACAACCAGGGTGTCCA...GACTTGGGTTTGTGACAGTTTGTGATGAAAAACCTCTACTTTTGTAATGGCGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | TTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCAGTATCCTGGACACCCTaGTTGTGGTACAGGATAAGG | + |
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Preference number: 4 (lower is better) Translates to: LLRSKSPAGNTVAIKSLSVSWTP*LWYRIR Trigger: CCTTATCCTGTACCACAACCAGGGTGTCCAGGATAC...TGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | GCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACAAAAGTAGTATCCTGGACACCCTaGTTGTGGTACAGGATAAGG | + |
|
Preference number: 4 (lower is better) Translates to: AGNTVAIKSLSCAAITKVVSWTP*LWYRIR Trigger: CCTTATCCTGTACCACAACCAGGGTGTCCAGGATAC...TACTTTTGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | TTACTGAGATCCAAAAGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCAAACTTGGGGTGGATATaGATTCGGTCCAGCATTAGG | + |
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Preference number: 4 (lower is better) Translates to: LLRSKSPAGNTVAIKSLSNLGWI*IRSSIR Trigger: CCTAATGCTGGACCGAATCCATATCCACCCCAAGTT...TGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCTTTTGGATCTCAGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR GCA 90 bp | TTTTTCATCACAAACTGTCACAAACCCAAGTCACAAGTGTTACAAAAGAAAGTGTTCCGGGACCCACCATaGCAGGAGCCGGAGGATTCA | + |
|
Preference number: 4 (lower is better) Translates to: FFITNCHKPKSQVLQKKVFRDPP*QEPEDS Trigger: TGAATCCTCCGGCTCCTGGCATGGTGGGTCCCGGAA...CACTTTCTTTTGTAACACTTGTGACTTGGGTTTGTGACAGTTTGTGATGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | GCCGCCATTACAAAAGTAGAGGTTTTTCATCACAAACTGTCACAAACCCAAGTCGTATCCTGGACACCCTaGTTGTGGTACAGGATAAGG | + |
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Preference number: 4 (lower is better) Translates to: AAITKVEVFHHKLSQTQVVSWTP*LWYRIR Trigger: CCTTATCCTGTACCACAACCAGGGTGTCCAGGATAC...GACTTGGGTTTGTGACAGTTTGTGATGAAAAACCTCTACTTTTGTAATGGCGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CCA 90 bp | TTTTTCATCACAAACTGTCACAAACCCAAGTCACAAGTGTTACAAAAGAAAGTGAAAGCTGGGTTTCCCTaGGGAATTCCGGGAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: FFITNCHKPKSQVLQKKVKAGFP*GIPGGQ Trigger: CTGTCCTCCCGGAATTCCCCAGGGAAACCCAGCTTT...CACTTTCTTTTGTAACACTTGTGACTTGGGTTTGTGACAGTTTGTGATGAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CAA 90 bp | CCCTCACTCCGTACGAGGATGACAGCTGAAGCTTGGTGGGAGAGTGGAGCTGGTGGTGGACAGGCAGGATaGGAACCTCCTGGGCACACA | + |
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Preference number: 5 (lower is better) Translates to: PSLRTRMTAEAWWESGAGGGQAG*EPPGHT Trigger: TGTGTGCCCAGGAGGTTCCAATCCTGCCTGTCCACC...ACCAGCTCCACTCTCCCACCAAGCTTCAGCTGTCATCCTCGTACGGAGTGAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CAA 90 bp | AGCCCTGCCGGGAACACAGTTGCCATTAAATCACTCTCATGTGCCGCCATTACAGGTGGACAGGCAGGATaGGAACCTCCTGGGCACACA | + |
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Preference number: 5 (lower is better) Translates to: SPAGNTVAIKSLSCAAITGGQAG*EPPGHT Trigger: TGTGTGCCCAGGAGGTTCCAATCCTGCCTGTCCACC...TGTAATGGCGGCACATGAGAGTGATTTAATGGCAACTGTGTTCCCGGCAGGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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| CDS-3UTR CAA 90 bp | GCCGCCATTACAAAAGTAGAGGTTTTTCATCACAAACTGTCACAAACCCAAGTCGGTGGACAGGCAGGATaGGAACCTCCTGGGCACACA | + |
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Preference number: 5 (lower is better) Translates to: AAITKVEVFHHKLSQTQVGGQAG*EPPGHT Trigger: TGTGTGCCCAGGAGGTTCCAATCCTGCCTGTCCACC...GACTTGGGTTTGTGACAGTTTGTGATGAAAAACCTCTACTTTTGTAATGGCGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023810.12 ENSMUST00000164688.2 ENSMUST00000164957.8 ENSMUST00000171245.8 |
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