RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRPSAP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015869

Ensembl transcript IDs: ENSMUST00000106391.8, ENSMUST00000135196.2, ENSMUST00000152496.8

Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCAGGGAGAGGACAACTGCACACACCAGTGCCAGGGCGGCTCAGCTaGCTTCCCAGAGCAGACACCAGTGAACAAACCGTCAGGGTCTGC +
Preference number: 1 (lower is better)
Translates to: AGRGQLHTPVPGRLS*LPRADTSEQTVRVC
Trigger: GCAGACCCTGACGGTTTGTTCACTGGTGTCTGCTCTGGGAAGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR GCA 90 bp GACTCCCTGACAGATTCAGTTGACCTTGTGCAGGGAGAGGACAACTaGACACACCAGTGCCAGGGCGGCTCAGCTGCCTTCCCAGAGCAG +
Preference number: 1 (lower is better)
Translates to: DSLTDSVDLVQGEDN*THQCQGGSAAFPEQ
Trigger: CTGCTCTGGGAAGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAAGGTCAACTGAATCTGTCAGGGAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR GCA 90 bp TGCTCAGCACTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTaGCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTACTGG +
Preference number: 1 (lower is better)
Translates to: CSALRARLMTGTGGP*HAPSLGRSGFLSYW
Trigger: CCAGTAAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAGTGCTGAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR GCA 90 bp GATTCAGTTGACCTTGTGCAGGGAGAGGACAACTGCACACACCAGTaGCAGGGCGGCTCAGCTGCCTTCCCAGAGCAGACACCAGTGAAC +
Preference number: 1 (lower is better)
Translates to: DSVDLVQGEDNCTHQ*QGGSAAFPEQTPVN
Trigger: GTTCACTGGTGTCTGCTCTGGGAAGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAAGGTCAACTGAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR TCA 90 bp TGCCTGCTTATTCAGCAGAACACATTCCAGATAGGTACTGCACTCTaGATATGGGGAGAGAAGGGAGCCAGCAGCCTGGTAGAGACTCCC +
Preference number: 1 (lower is better)
Translates to: CLLIQQNTFQIGTAL*IWGEKGASSLVETP
Trigger: GGGAGTCTCTACCAGGCTGCTGGCTCCCTTCTCTCCCCATATTCAGAGTGCAGTACCTATCTGGAATGTGTTCTGCTGAATAAGCAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR GCA 90 bp CAGGCTTCTTGTCTTACTGGAAGGTGTTACCAGCCTACAACTGGATaGCTGCTTATTCAGCAGAACACATTCCAGATAGGTACTGCACTC +
Preference number: 1 (lower is better)
Translates to: QASCLTGRCYQPTTG*LLIQQNTFQIGTAL
Trigger: GAGTGCAGTACCTATCTGGAATGTGTTCTGCTGAATAAGCAGGCATCCAGTTGTAGGCTGGTAACACCTTCCAGTAAGACAAGAAGCCTG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR-3UTR CCA 90 bp AAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCTTACCAGCCTACAACTaGATGCCTGCTTATTCAGCA +
Preference number: 2 (lower is better)
Translates to: KADDRDRRAVPCTQSWAVLPAYN*MPAYSA
Trigger: TGCTGAATAAGCAGGCATCCAGTTGTAGGCTGGTAA...GACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR-3UTR TCA 90 bp TGGGCGGTCAGGCTTCTTGTCTTACTGGAAGGTGTTACCAGCCTACAACTGGATCTGGTAGAGACTCCCTaGCTGCAGCCCATTTGCAGG +
Preference number: 2 (lower is better)
Translates to: WAVRLLVLLEGVTSLQLDLVETP*LQPICR
Trigger: CCTGCAAATGGGCTGCAGTCAGGGAGTCTCTACCAG...ATCCAGTTGTAGGCTGGTAACACCTTCCAGTAAGACAAGAAGCCTGACCGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR-3UTR GCA 90 bp TTGTGCAGGGAGAGGACAACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCCTCTACAACTGGATGCCTaGTTATTCAGCAGAACACAT +
Preference number: 2 (lower is better)
Translates to: LCRERTTAHTSARAAQLPLQLDA*LFSRTH
Trigger: ATGTGTTCTGCTGAATAAGCAGGCATCCAGTTGTAG...AGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR-3UTR CCA 90 bp ACTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTCTGGCTTCTTGTCTTACTaGAAGGTGTTACCAGCCTAC +
Preference number: 2 (lower is better)
Translates to: TKSKADDRDRRAVPCTQSGFLSY*KVLPAY
Trigger: GTAGGCTGGTAACACCTTCCAGTAAGACAAGAAGCC...AGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR-3UTR GCA 90 bp AACTTTTATTTGCAGCTTCCGAGTGACACGGTTCTGAGGGACAGGGTGCTACTCCAGCCTACAACTGGATaGCTGCTTATTCAGCAGAAC +
Preference number: 2 (lower is better)
Translates to: NFYLQLPSDTVLRDRVLLQPTTG*LLIQQN
Trigger: GTTCTGCTGAATAAGCAGGCATCCAGTTGTAGGCTG...GAGTAGCACCCTGTCCCTCAGAACCGTGTCACTCGGAAGCTGCAAATAAAAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR TCA 72 bp GGAGAGAAGGGAGCCAGCAGCCTGGTAGAGACTCCCTaGCTGCAGCCCATTTGCAGGCTGACACCCCGCTGT +
Preference number: 3 (lower is better)
Translates to: GEKGASSLVETP*LQPICRLTPRC
Trigger: ACAGCGGGGTGTCAGCCTGCAAATGGGCTGCAGTCAGGGAGTCTCTACCAGGCTGCTGGCTCCCTTCTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR GCA 72 bp CTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTaGCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTG +
Preference number: 3 (lower is better)
Translates to: LRARLMTGTGGP*HAPSLGRSGFL
Trigger: CAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR GCA 72 bp AGCAAGGCTGATGACAGGGACAGGAGGGCCGTGCCATaGACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTA +
Preference number: 3 (lower is better)
Translates to: SKADDRDRRAVP*TQSWAVRLLVL
Trigger: TAAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR CCA 72 bp GACAGGGACAGGAGGGCCGTGCCATGCACCCAGTCTTaGGCGGTCAGGCTTCTTGTCTTACTGGAAGGTGTT +
Preference number: 3 (lower is better)
Translates to: DRDRRAVPCTQS*AVRLLVLLEGV
Trigger: AACACCTTCCAGTAAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR GCA 72 bp ACAGATTCAGTTGACCTTGTGCAGGGAGAGGACAACTaGACACACCAGTGCCAGGGCGGCTCAGCTGCCTTC +
Preference number: 3 (lower is better)
Translates to: TDSVDLVQGEDN*THQCQGGSAAF
Trigger: GAAGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAAGGTCAACTGAATCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR CCA 72 bp GCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTACTaGAAGGTGTTACCAGCCTACAACTGGATGCCTGCT +
Preference number: 3 (lower is better)
Translates to: APSLGRSGFLSY*KVLPAYNWMPA
Trigger: AGCAGGCATCCAGTTGTAGGCTGGTAACACCTTCCAGTAAGACAAGAAGCCTGACCGCCCAAGACTGGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR TCA 72 bp AAGGGAGACAAGGAACTTTTATTTGCAGCTTCCGAGTaGCACGGTTCTGAGGGACAGGGTGCTACTCTCTCA +
Preference number: 3 (lower is better)
Translates to: KGDKELLFAASE*HGSEGQGATLS
Trigger: TGAGAGAGTAGCACCCTGTCCCTCAGAACCGTGTCACTCGGAAGCTGCAAATAAAAGTTCCTTGTCTCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR GCA 72 bp CCTGCTTATTCAGCAGAACACATTCCAGATAGGTACTaGACTCTGAATATGGGGAGAGAAGGGAGCCAGCAG +
Preference number: 3 (lower is better)
Translates to: PAYSAEHIPDRY*TLNMGREGSQQ
Trigger: CTGCTGGCTCCCTTCTCTCCCCATATTCAGAGTGCAGTACCTATCTGGAATGTGTTCTGCTGAATAAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp TTGTGCAGGGAGAGGACAACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCCTCCGTGCAGGCGGCCGTaGAGTTGGCCGAGAAGACTC +
Preference number: 4 (lower is better)
Translates to: LCRERTTAHTSARAAQLPPCRRP*SWPRRL
Trigger: GAGTCTTCTCGGCCAACTCCACGGCCGCCTGCACGG...AGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp GGACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTGGGCAGCTCCAGGCCTaGGTGCACCGTGGCGTTCTT +
Preference number: 4 (lower is better)
Translates to: GQEGRAMHPVLGGQASCLGQLQA*VHRGVL
Trigger: AAGAACGCCACGGTGCACCCAGGCCTGGAGCTGCCC...AAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR GCA 90 bp AGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTACTGGCTTGGCCAGTTCCGTaGAGGCGGCCGTGGAGTTGG +
Preference number: 4 (lower is better)
Translates to: RRAVPCTQSWAVRLLVLLAWPVP*RRPWSW
Trigger: CCAACTCCACGGCCGCCTGCACGGAACTGGCCAAGC...CAGTAAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR GCA 90 bp GGACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTAGCTCCAGGCCTGGGTaGACCGTGGCGTTCTTGACC +
Preference number: 4 (lower is better)
Translates to: GQEGRAMHPVLGGQASCLSSRPG*TVAFLT
Trigger: GGTCAAGAACGCCACGGTGCACCCAGGCCTGGAGCT...AAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR GCA 90 bp ACTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTCTAGACTCGGTAGCCGGTaGGGGCTGCGTTCATGGCCG +
Preference number: 4 (lower is better)
Translates to: TKSKADDRDRRAVPCTQSRLGSR*GLRSWP
Trigger: CGGCCATGAACGCAGCCCGCACCGGCTACCGAGTCT...AGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR CAA 72 bp CAGCAGCCTGGTAGAGACTCCCTGACTGCAGCCCATTaGCAGGCTGACACCCCGCTGTGTCTGTCCGCCTCT +
Preference number: 4 (lower is better)
Translates to: QQPGRDSLTAAH*QADTPLCLSAS
Trigger: AGAGGCGGACAGACACAGCGGGGTGTCAGCCTGCAAATGGGCTGCAGTCAGGGAGTCTCTACCAGGCTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR TCA 90 bp CCTTGTGCAGGGAGAGGACAACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCTCAGTGCATACGCCATaGTCAGCAGCTCCATCACAG +
Preference number: 4 (lower is better)
Translates to: PCAGRGQLHTPVPGRLSCSVHTP*SAAPSQ
Trigger: CTGTGATGGAGCTGCTGATCATGGCGTATGCACTGA...GCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR GCA 90 bp ACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCCTTCCCAGAGCAGACACCAGCAATGGAGCCCCTCTTaGGCATCTTGCTTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: TAHTSARAAQLPSQSRHQQWSPS*ASCFAC
Trigger: GCAAGCAAAGCAAGATGCGCAAGAGGGGCTCCATTG...CTGGTGTCTGCTCTGGGAAGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp GGACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTCAGCTTTCGCCAGCATaGATGCCAGGAGCTTGCACA +
Preference number: 4 (lower is better)
Translates to: GQEGRAMHPVLGGQASCLQLSPA*MPGACT
Trigger: TGTGCAAGCTCCTGGCATCCATGCTGGCGAAAGCTG...AAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR GCA 90 bp CAGGGAGAGGACAACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCCTTCCCATTTCGCCAGCATGGATaGCAGGAGCTTGCACACAAT +
Preference number: 4 (lower is better)
Translates to: QGEDNCTHQCQGGSAAFPFRQHG*QELAHN
Trigger: ATTGTGTGCAAGCTCCTGGCATCCATGCTGGCGAAA...TGGGAAGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp AGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTACTGGGAGCTTGCACACAATaGAGCCCCTCTTGCGCATCT +
Preference number: 4 (lower is better)
Translates to: RRAVPCTQSWAVRLLVLLGACTQ*SPSCAS
Trigger: AGATGCGCAAGAGGGGCTCCATTGTGTGCAAGCTCC...CAGTAAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR TCA 90 bp ACACCAGTGCCAGGGCGGCTCAGCTGCCTTCCCAGAGCAGACACCAGTGAACAACTGAAGCAGGAAAGGTaGGGCTCTAAGGTTGTCCAC +
Preference number: 4 (lower is better)
Translates to: TPVPGRLSCLPRADTSEQLKQER*GSKVVH
Trigger: GTGGACAACCTTAGAGCCTCACCTTTCCTGCTTCAG...TTGTTCACTGGTGTCTGCTCTGGGAAGGCAGCTGAGCCGCCCTGGCACTGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR GCA 90 bp ACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTACCCCTCTTGCGCATCTTaGTTTGCTTGCTGTAGGGGA +
Preference number: 4 (lower is better)
Translates to: TGGPCHAPSLGRSGFLSYPSCAS*FACCRG
Trigger: TCCCCTACAGCAAGCAAAGCAAGATGCGCAAGAGGG...GTAAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp AAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCTCCGACCACTGTTATTaGTGGCTTCTCTTTGGCCAT +
Preference number: 4 (lower is better)
Translates to: KADDRDRRAVPCTQSWAVSDHCY*WLLFGH
Trigger: ATGGCCAAAGAGAAGCCACCAATAACAGTGGTCGGA...GACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR TCA 90 bp GGACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTTCTTCCTGGATATACTaGAGCAGGAAAGGTGAGGCT +
Preference number: 4 (lower is better)
Translates to: GQEGRAMHPVLGGQASCLSSWIY*SRKGEA
Trigger: AGCCTCACCTTTCCTGCTTCAGTATATCCAGGAAGA...AAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
3UTR CAA 72 bp CCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTaGTCTTACTGGAAGGTGTTACCAGCCTACAACTGG +
Preference number: 4 (lower is better)
Translates to: PCHAPSLGRSGF*SYWKVLPAYNW
Trigger: CCAGTTGTAGGCTGGTAACACCTTCCAGTAAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR GCA 90 bp ACTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTCTGGACTGAGCCCTTTTTaGAGCATCAGGAGACTTAGC +
Preference number: 4 (lower is better)
Translates to: TKSKADDRDRRAVPCTQSGLSPF*SIRRLS
Trigger: GCTAAGTCTCCTGATGCTGCAAAAAGGGCTCAGTCC...AGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp ACTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTCTTTGGTGGCTTCTCTTTaGCCATCATTAAGGGCAGCT +
Preference number: 4 (lower is better)
Translates to: TKSKADDRDRRAVPCTQSLVASL*PSLRAA
Trigger: AGCTGCCCTTAATGATGGCCAAAGAGAAGCCACCAA...AGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp ACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTACGACCACTGTTATTGGTaGCTTCTCTTTGGCCATCAT +
Preference number: 4 (lower is better)
Translates to: TGGPCHAPSLGRSGFLSYDHCYW*LLFGHH
Trigger: ATGATGGCCAAAGAGAAGCCACCAATAACAGTGGTC...GTAAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp GCACTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTATAGACTCTCCATTGTaGATTCTCCGAATCGCCTCA +
Preference number: 4 (lower is better)
Translates to: ALRARLMTGTGGPCHAPSIDSPL*ILRIAS
Trigger: TGAGGCGATTCGGAGAATCCACAATGGAGAGTCTAT...ACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp TTGTGCAGGGAGAGGACAACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCCTCTCTTGTTTCTCCATTaGTCTCCTGATATACAACAG +
Preference number: 4 (lower is better)
Translates to: LCRERTTAHTSARAAQLPLLFLH*SPDIQQ
Trigger: CTGTTGTATATCAGGAGACCAATGGAGAAACAAGAG...AGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp GGACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTCCTTGTATTTCCTTTTaGTGGAGGTCCATAGTGATA +
Preference number: 4 (lower is better)
Translates to: GQEGRAMHPVLGGQASCLPCISF*WRSIVI
Trigger: TATCACTATGGACCTCCACCAAAAGGAAATACAAGG...AAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR GCA 90 bp AACTTTTATTTGCAGCTTCCGAGTGACACGGTTCTGAGGGACAGGGTGCTACTCTGGATGCCAGGAGCTTaGACACAATGGAGCCCCTCT +
Preference number: 4 (lower is better)
Translates to: NFYLQLPSDTVLRDRVLLWMPGA*TQWSPS
Trigger: AGAGGGGCTCCATTGTGTGCAAGCTCCTGGCATCCA...GAGTAGCACCCTGTCCCTCAGAACCGTGTCACTCGGAAGCTGCAAATAAAAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp TATTCAGCAGAACACATTCCAGATAGGTACTGCACTCTGAATATGGGGAGAGAAAGGCGGCCGTGGAGTTaGCCGAGAAGACTCGGTAGC +
Preference number: 4 (lower is better)
Translates to: YSAEHIPDRYCTLNMGRERRPWS*PRRLGS
Trigger: GCTACCGAGTCTTCTCGGCCAACTCCACGGCCGCCT...TTCTCTCCCCATATTCAGAGTGCAGTACCTATCTGGAATGTGTTCTGCTGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CCA 90 bp ACTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTCTTGTATTTCCTTTTGGTaGAGGTCCATAGTGATAATG +
Preference number: 4 (lower is better)
Translates to: TKSKADDRDRRAVPCTQSCISFW*RSIVIM
Trigger: CATTATCACTATGGACCTCCACCAAAAGGAAATACA...AGACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR TCA 90 bp TGGGCGGTCAGGCTTCTTGTCTTACTGGAAGGTGTTACCAGCCTACAACTGGATCAGAAAGAATCAGGCTaGTGTCCACAGTCTTTATCT +
Preference number: 4 (lower is better)
Translates to: WAVRLLVLLEGVTSLQLDQKESG*CPQSLS
Trigger: AGATAAAGACTGTGGACATCAGCCTGATTCTTTCTG...ATCCAGTTGTAGGCTGGTAACACCTTCCAGTAAGACAAGAAGCCTGACCGCCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR GCA 90 bp CCTGCTTATTCAGCAGAACACATTCCAGATAGGTACTGCACTCTGAATATGGGGGCATCTTGCTTTGCTTaGTGTAGGGGAAGTAGGGGA +
Preference number: 4 (lower is better)
Translates to: PAYSAEHIPDRYCTLNMGASCFA*CRGSRG
Trigger: TCCCCTACTTCCCCTACAGCAAGCAAAGCAAGATGC...CCCCATATTCAGAGTGCAGTACCTATCTGGAATGTGTTCTGCTGAATAAGCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR TCA 90 bp CCTGCTTATTCAGCAGAACACATTCCAGATAGGTACTGCACTCTGAATATGGGGTCCATAGTGATAATGTaGGTTAAACCAGCTTTCGCC +
Preference number: 4 (lower is better)
Translates to: PAYSAEHIPDRYCTLNMGSIVIM*VKPAFA
Trigger: GGCGAAAGCTGGTTTAACTCACATTATCACTATGGA...CCCCATATTCAGAGTGCAGTACCTATCTGGAATGTGTTCTGCTGAATAAGCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS GCA 90 bp GGCGGCCGTGGAGTTGGCCGAGAAGACTCGGTAGCCGGTGCGGGCTaGGTTCATGGCCGGCGAGGCGGCGGGCCGAGCCCGCGGGACACG +
Preference number: 5 (lower is better)
Translates to: GGRGVGREDSVAGAG*VHGRRGGGPSPRDT
Trigger: CGTGTCCCGCGGGCTCGGCCCGCCGCCTCGCCGGCCATGAACGCAGCCCGCACCGGCTACCGAGTCTTCTCGGCCAACTCCACGGCCGCC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106391.8
ENSMUST00000135196.2
CDS GCA 90 bp CCGTGCAGGCGGCCGTGGAGTTGGCCGAGAAGACTCGGTAGCCGGTaGGGGCTGCGTTCATGGCCGGCGAGGCGGCGGGCCGAGCCCGCG +
Preference number: 5 (lower is better)
Translates to: PCRRPWSWPRRLGSR*GLRSWPARRRAEPA
Trigger: CGCGGGCTCGGCCCGCCGCCTCGCCGGCCATGAACGCAGCCCGCACCGGCTACCGAGTCTTCTCGGCCAACTCCACGGCCGCCTGCACGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106391.8
ENSMUST00000135196.2
CDS CCA 90 bp TGGAGTTGGCCGAGAAGACTCGGTAGCCGGTGCGGGCTGCGTTCATaGCCGGCGAGGCGGCGGGCCGAGCCCGCGGGACACGCAGAGCAG +
Preference number: 5 (lower is better)
Translates to: WSWPRRLGSRCGLRS*PARRRAEPAGHAEQ
Trigger: CTGCTCTGCGTGTCCCGCGGGCTCGGCCCGCCGCCTCGCCGGCCATGAACGCAGCCCGCACCGGCTACCGAGTCTTCTCGGCCAACTCCA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106391.8
ENSMUST00000135196.2
CDS CCA 90 bp GGGCAGCTCCAGGCCTGGGTGCACCGTGGCGTTCTTGACCATGGGTaGGGAGTGCCGACCGTCGTCCATATCCAGCTCTGTACACTGCGC +
Preference number: 5 (lower is better)
Translates to: GQLQAWVHRGVLDHG*GVPTVVHIQLCTLR
Trigger: GCGCAGTGTACAGAGCTGGATATGGACGACGGTCGGCACTCCCCACCCATGGTCAAGAACGCCACGGTGCACCCAGGCCTGGAGCTGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS GCA 90 bp GGTGGCTTCTCTTTGGCCATCATTAAGGGCAGCTCCAGGCCTGGGTaGACCGTGGCGTTCTTGACCATGGGTGGGGAGTGCCGACCGTCG +
Preference number: 5 (lower is better)
Translates to: GGFSLAIIKGSSRPG*TVAFLTMGGECRPS
Trigger: CGACGGTCGGCACTCCCCACCCATGGTCAAGAACGCCACGGTGCACCCAGGCCTGGAGCTGCCCTTAATGATGGCCAAAGAGAAGCCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS TCA 90 bp CCATCATTAAGGGCAGCTCCAGGCCTGGGTGCACCGTGGCGTTCTTaGCCATGGGTGGGGAGTGCCGACCGTCGTCCATATCCAGCTCTG +
Preference number: 5 (lower is better)
Translates to: PSLRAAPGLGAPWRS*PWVGSADRRPYPAL
Trigger: CAGAGCTGGATATGGACGACGGTCGGCACTCCCCACCCATGGTCAAGAACGCCACGGTGCACCCAGGCCTGGAGCTGCCCTTAATGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp GCACTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTATGGATGCCAGGAGCTaGCACACAATGGAGCCCCTC +
Preference number: 5 (lower is better)
Translates to: ALRARLMTGTGGPCHAPSMDARS*HTMEPL
Trigger: GAGGGGCTCCATTGTGTGCAAGCTCCTGGCATCCAT...ACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp CCTTGTGCAGGGAGAGGACAACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCGCCATAGACTCTCCATaGTGGATTCTCCGAATCGCC +
Preference number: 5 (lower is better)
Translates to: PCAGRGQLHTPVPGRLSCAIDSP*WILRIA
Trigger: GGCGATTCGGAGAATCCACAATGGAGAGTCTATGGC...GCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp CCTTGTGCAGGGAGAGGACAACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCATTGGTGGCTTCTCTTaGGCCATCATTAAGGGCAGC +
Preference number: 5 (lower is better)
Translates to: PCAGRGQLHTPVPGRLSCIGGFS*AIIKGS
Trigger: GCTGCCCTTAATGATGGCCAAAGAGAAGCCACCAAT...GCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp GGACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTCTCCGACCACTGTTATaGGTGGCTTCTCTTTGGCCA +
Preference number: 5 (lower is better)
Translates to: GQEGRAMHPVLGGQASCLLRPLL*VASLWP
Trigger: TGGCCAAAGAGAAGCCACCAATAACAGTGGTCGGAG...AAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp TTGTGCAGGGAGAGGACAACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCCTCTTGCGCATCTTGCTTaGCTTGCTGTAGGGGAAGTA +
Preference number: 5 (lower is better)
Translates to: LCRERTTAHTSARAAQLPLAHLA*LAVGEV
Trigger: TACTTCCCCTACAGCAAGCAAAGCAAGATGCGCAAG...AGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGTTGTCCTCTCCCTGCACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp ACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCCTTCCCAGAGCAGACACCAGGCCTTGTATTTCCTTTaGGTGGAGGTCCATAGTGAT +
Preference number: 5 (lower is better)
Translates to: TAHTSARAAQLPSQSRHQALYFL*VEVHSD
Trigger: ATCACTATGGACCTCCACCAAAAGGAAATACAAGGC...CTGGTGTCTGCTCTGGGAAGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp GCACTAAGAGCAAGGCTGATGACAGGGACAGGAGGGCCGTGCCATGCACCCAGTCATGAGGGACAGTGTTaGTCACCACCACCTCATCAA +
Preference number: 5 (lower is better)
Translates to: ALRARLMTGTGGPCHAPSHEGQC*SPPPHQ
Trigger: TTGATGAGGTGGTGGTGACAAACACTGTCCCTCATG...ACTGGGTGCATGGCACGGCCCTCCTGTCCCTGTCATCAGCCTTGCTCTTAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp ACTGCACACACCAGTGCCAGGGCGGCTCAGCTGCCTTCCCAGAGCAGACACCAGAAAGCTGAAAAAGCCTaGTATTTCCTTTTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: TAHTSARAAQLPSQSRHQKAEKA*YFLLVE
Trigger: CTCCACCAAAAGGAAATACAAGGCTTTTTCAGCTTT...CTGGTGTCTGCTCTGGGAAGGCAGCTGAGCCGCCCTGGCACTGGTGTGTGCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp GGACAGGAGGGCCGTGCCATGCACCCAGTCTTGGGCGGTCAGGCTTCTTGTCTTCCACGAACAGATTCTTaGATTTCAACTCTTGTTTCT +
Preference number: 5 (lower is better)
Translates to: GQEGRAMHPVLGGQASCLPRTDS*ISTLVS
Trigger: AGAAACAAGAGTTGAAATCAAAGAATCTGTTCGTGG...AAGACAAGAAGCCTGACCGCCCAAGACTGGGTGCATGGCACGGCCCTCCTGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS-3UTR CAA 90 bp TGGGCGGTCAGGCTTCTTGTCTTACTGGAAGGTGTTACCAGCCTACAACTGGATGGTGAGGCTCTAAGGTaGTCCACGGGAAAGCTGAAA +
Preference number: 5 (lower is better)
Translates to: WAVRLLVLLEGVTSLQLDGEALR*STGKLK
Trigger: TTTCAGCTTTCCCGTGGACAACCTTAGAGCCTCACC...ATCCAGTTGTAGGCTGGTAACACCTTCCAGTAAGACAAGAAGCCTGACCGCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS GCA 72 bp GGAGTTGGCCGAGAAGACTCGGTAGCCGGTGCGGGCTaGGTTCATGGCCGGCGAGGCGGCGGGCCGAGCCCG +
Preference number: 6 (lower is better)
Translates to: GVGREDSVAGAG*VHGRRGGGPSP
Trigger: CGGGCTCGGCCCGCCGCCTCGCCGGCCATGAACGCAGCCCGCACCGGCTACCGAGTCTTCTCGGCCAACTCC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106391.8
ENSMUST00000135196.2
CDS GCA 72 bp CGGCCGTGGAGTTGGCCGAGAAGACTCGGTAGCCGGTaGGGGCTGCGTTCATGGCCGGCGAGGCGGCGGGCC +
Preference number: 6 (lower is better)
Translates to: RPWSWPRRLGSR*GLRSWPARRRA
Trigger: GGCCCGCCGCCTCGCCGGCCATGAACGCAGCCCGCACCGGCTACCGAGTCTTCTCGGCCAACTCCACGGCCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106391.8
ENSMUST00000135196.2
CDS CCA 72 bp TGCGCTTGGCCAGTTCCGTGCAGGCGGCCGTGGAGTTaGCCGAGAAGACTCGGTAGCCGGTGCGGGCTGCGT +
Preference number: 6 (lower is better)
Translates to: CAWPVPCRRPWS*PRRLGSRCGLR
Trigger: ACGCAGCCCGCACCGGCTACCGAGTCTTCTCGGCCAACTCCACGGCCGCCTGCACGGAACTGGCCAAGCGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106391.8
ENSMUST00000135196.2
CDS TCA 72 bp AGGGCAGCTCCAGGCCTGGGTGCACCGTGGCGTTCTTaGCCATGGGTGGGGAGTGCCGACCGTCGTCCATAT +
Preference number: 6 (lower is better)
Translates to: RAAPGLGAPWRS*PWVGSADRRPY
Trigger: ATATGGACGACGGTCGGCACTCCCCACCCATGGTCAAGAACGCCACGGTGCACCCAGGCCTGGAGCTGCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS CCA 72 bp CAGGCCTGGGTGCACCGTGGCGTTCTTGACCATGGGTaGGGAGTGCCGACCGTCGTCCATATCCAGCTCTGT +
Preference number: 6 (lower is better)
Translates to: QAWVHRGVLDHG*GVPTVVHIQLC
Trigger: ACAGAGCTGGATATGGACGACGGTCGGCACTCCCCACCCATGGTCAAGAACGCCACGGTGCACCCAGGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS CAA 90 bp GCCATCATTAAGGGCAGCTCCAGGCCTGGGTGCACCGTGGCGTTCTaGACCATGGGTGGGGAGTGCCGACCGTCGTCCATATCCAGCTCT +
Preference number: 6 (lower is better)
Translates to: AIIKGSSRPGCTVAF*TMGGECRPSSISSS
Trigger: AGAGCTGGATATGGACGACGGTCGGCACTCCCCACCCATGGTCAAGAACGCCACGGTGCACCCAGGCCTGGAGCTGCCCTTAATGATGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS GCA 72 bp TCTTTGGCCATCATTAAGGGCAGCTCCAGGCCTGGGTaGACCGTGGCGTTCTTGACCATGGGTGGGGAGTGC +
Preference number: 6 (lower is better)
Translates to: SLAIIKGSSRPG*TVAFLTMGGEC
Trigger: GCACTCCCCACCCATGGTCAAGAACGCCACGGTGCACCCAGGCCTGGAGCTGCCCTTAATGATGGCCAAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS CAA 72 bp TCGCAATGCGTCCCCCGACGTCTCCGACCACTGTTATaGGTGGCTTCTCTTTGGCCATCATTAAGGGCAGCT +
Preference number: 6 (lower is better)
Translates to: SQCVPRRLRPLL*VASLWPSLRAA
Trigger: AGCTGCCCTTAATGATGGCCAAAGAGAAGCCACCAATAACAGTGGTCGGAGACGTCGGGGGACGCATTGCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS TCA 72 bp TATTCCTGGCGCAGGCGGTCTTCAGTGCATACGCCATaGTCAGCAGCTCCATCACAGCCGTATTCACATCTC +
Preference number: 6 (lower is better)
Translates to: YSWRRRSSVHTP*SAAPSQPYSHL
Trigger: GAGATGTGAATACGGCTGTGATGGAGCTGCTGATCATGGCGTATGCACTGAAGACCGCCTGCGCCAGGAATA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106391.8
ENSMUST00000135196.2
ENSMUST00000152496.8
CDS CAA 72 bp GACACTGTAGTTTCTGAAGTTCATGAGGGACAGTGTTaGTCACCACCACCTCATCAATGGGGGACTCCTCAA +
Preference number: 6 (lower is better)
Translates to: DTVVSEVHEGQC*SPPPHQWGTPQ
Trigger: TTGAGGAGTCCCCCATTGATGAGGTGGTGGTGACAAACACTGTCCCTCATGAACTTCAGAAACTACAGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8
CDS TCA 72 bp TGTGGATTCTCCGAATCGCCTCAGAAAGAATCAGGCTaGTGTCCACAGTCTTTATCTTGGGACACTGTAGTT +
Preference number: 6 (lower is better)
Translates to: CGFSESPQKESG*CPQSLSWDTVV
Trigger: AACTACAGTGTCCCAAGATAAAGACTGTGGACATCAGCCTGATTCTTTCTGAGGCGATTCGGAGAATCCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106391.8