Pregenerated sensors for PRPMP5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000107874Ensembl transcript IDs: ENSMUST00000048686.9
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGGCATGGAATGAAAAATaGGGCATTTATTTACCTTCT | + |
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Preference number: 2 (lower is better) Translates to: DVSMIYISRNKVVITEFWAWNEK*GIYLPS Trigger: AGAAGGTAAATAAATGCCCCATTTTTCATTCCATGC...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGCCTAGGGTGTCCCTGTaGGCCTCCCTGTGGGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: DVSMIYISRNKVVITEFWPRVSL*ASLWGW Trigger: CCACCCCCACAGGGAGGCCCACAGGGACACCCTAGG...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGCCTAAGGGGACTCTGTaGGCCTCCCTGTGGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: DVSMIYISRNKVVITEFWPKGTL*ASLWWW Trigger: CCACCACCACAGGGAGGCCCACAGAGTCCCCTTAGG...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGCTGGGGGCCTCTCTGTaGGGGTGGGCCTTGTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: DVSMIYISRNKVVITEFWLGASL*GWALLV Trigger: AACCAACAAGGCCCACCCCCACAGAGAGGCCCCCAG...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR TCA 90 bp | GTTTTGGATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATGTTGGTTTCCAGGCTaGGGAGGTCTCTGCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: VLDVSMIYISRNKVVITECWFPG*GGLCWG Trigger: CCCCCAGCAGAGACCTCCTCAGCCTGGAAACCAACA...TTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATCCAAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTTTGGATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAAGGGGGTGGGCCTTGTTaGTTTCCAGGCCTAAGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: VLDVSMIYISRNKVVITEGGGPC*FPGLRG Trigger: TCCCCTTAGGCCTGGAAACCAACAAGGCCCACCCCC...TTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATCCAAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATGCCTCCCTGTGGGGGTaGTCCTTCATGGTTCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNASLWG*SFMVPR Trigger: CCTGGGAACCATGAAGGACCACCCCCACAGGGAGGC...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATGGGGGTGGGCCTTGTTaGTTTCCAGGCCTAGGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNGGGPC*FPGLGG Trigger: ACCCCCTAGGCCTGGAAACCAACAAGGCCCACCCCC...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGGCCTCCCTGTGGTGGTaGGCCTTGTTGTTTTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: DVSMIYISRNKVVITEFWASLWW*ALLFSR Trigger: CCTGGAAAACAACAAGGCCCACCACCACAGGGAGGC...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATGGGGGTGGTCCTTCATaGTTCCCAGGCCTAAGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNGGGPS*FPGLRG Trigger: ACCCCTTAGGCCTGGGAACCATGAAGGACCACCCCC...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATCTGTGGGCCTCCCTGTaGGGGTGGTCCTTCATGGTT | + |
|
Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNLWASL*GWSFMV Trigger: AACCATGAAGGACCACCCCCACAGGGAGGCCCACAG...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATGCCTCTCTGTGGGGGTaGGCCTTGTTGGTTTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNASLWG*ALLVSR Trigger: CCTGGAAACCAACAAGGCCCACCCCCACAGAGAGGC...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGCTGAGGGCTTCCTGGTaGGGGTGGTCCTTGTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: DVSMIYISRNKVVITEFWLRASW*GWSLLV Trigger: AACCAACAAGGACCACCCCCACCAGGAAGCCCTCAG...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATTCCCTGAGGGCTTCCTaGTGGGGGTGGTCCTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNSLRAS*WGWSLL Trigger: CAACAAGGACCACCCCCACCAGGAAGCCCTCAGGGA...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR GCA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGCCATACCCTTGGCTCTaGTCTCCCATCTCTAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: DVSMIYISRNKVVITEFWPYPWL*SPISRS Trigger: GCTCCTAGAGATGGGAGAGCAGAGCCAAGGGTATGG...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATGCTTCCTGGTGGGGGTaGTCCTTGTTGGTTTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNASWWG*SLLVSR Trigger: CCTGGAAACCAACAAGGACCACCCCCACCAGGAAGC...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR GCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATCAGGACCAGCAAAGCTaGTGTGAGCAGGACAACCAG | + |
|
Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNQDQQS*CEQDNQ Trigger: CTGGTTGTCCTGCTCACAGCAGCTTTGCTGGTCCTG...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTTTGGATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAAAGGAGGGTGCTGTGGTaGTTCCTCTGGTCTATTCAC | + |
|
Preference number: 4 (lower is better) Translates to: VLDVSMIYISRNKVVITERRVLW*FLWSIH Trigger: GTGAATAGACCAGAGGAACCACCACAGCACCCTCCT...TTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATCCAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTTTGGATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAAGTGAGGAGGGTGCTGTaGTGGTTCCTCTGGTCTATT | + |
|
Preference number: 4 (lower is better) Translates to: VLDVSMIYISRNKVVITEVRRVL*WFLWSI Trigger: AATAGACCAGAGGAACCACCACAGCACCCTCCTCAC...TTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATCCAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATCTGAAGACCTCCCTGTaGAGGTGGGCCTTGTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNLKTSL*RWALLV Trigger: AACCAACAAGGCCCACCTCCACAGGGAGGTCTTCAG...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR TCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATTCTTCATCTTGTCTCTaGGCTGAGCTCAGGACCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNSSSCL*AELRTS Trigger: GCTGGTCCTGAGCTCAGCTCAGAGACAAGATGAAGA...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATCATTTTCATCAGAACTaGGAGGTCTTGGGGGCATTC | + |
|
Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNHFHQN*EVLGAF Trigger: GAATGCCCCCAAGACCTCCCAGTTCTGATGAAAATG...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CCA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATTCCAGGAGGTGGTTTTaGAAAATGATGACCATACCC | + |
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Preference number: 4 (lower is better) Translates to: VRASQLTESEFKSHTPQNSRRWF*KMMTIP Trigger: GGGTATGGTCATCATTTTCCAAAACCACCTCCTGGA...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| 3UTR CAA 72 bp | CTTAGTTTCTTGAATAACTCTGTTAGAGCTTCACAGTaGACTGAGAGTGAATTTAAATCACATACACCACAG | + |
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Preference number: 4 (lower is better) Translates to: LSFLNNSVRASQ*TESEFKSHTPQ Trigger: CTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAACAGAGTTATTCAAGAAACTAAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| 3UTR CAA 72 bp | TGCGTAATTTCAACATGTCCTAAATATCTTAGTTTCTaGAATAACTCTGTTAGAGCTTCACAGTTGACTGAG | + |
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Preference number: 4 (lower is better) Translates to: CVISTCPKYLSF*NNSVRASQLTE Trigger: CTCAGTCAACTGTGAAGCTCTAACAGAGTTATTCAAGAAACTAAGATATTTAGGACATGTTGAAATTACGCA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 90 bp | GCCTTGTTGGTTACCAGGCCTAGGGTGTCCCTGTGGGCCTCCCTGTaGGGGTGGTCCTTCATGGTTCCCAGGCCTAAGGGGTCCCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: ALLVTRPRVSLWASL*GWSFMVPRPKGSLW Trigger: CCACAGGGACCCCTTAGGCCTGGGAACCATGAAGGACCACCCCCACAGGGAGGCCCACAGGGACACCCTAGGCCTGGTAACCAACAAGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS TCA 90 bp | TGCTGGGGGCCTCCCTGTGGGGGAGGACCATGGTGGTGTCCTGGGTaGGGAGGGTGCTGTGGTGGTTCCTCTGGTCTATTCACATCTTCC | + |
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Preference number: 5 (lower is better) Translates to: CWGPPCGGGPWWCPG*GGCCGGSSGLFTSS Trigger: GGAAGATGTGAATAGACCAGAGGAACCACCACAGCACCCTCCTCACCCAGGACACCACCATGGTCCTCCCCCACAGGGAGGCCCCCAGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 90 bp | CTGTGGGGGAGGACCATGGTGGTGTCCTGGGTGAGGAGGGTGCTGTaGTGGTTCCTCTGGTCTATTCACATCTTCCTCACTGCCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: LWGRTMVVSWVRRVL*WFLWSIHIFLTAIF Trigger: GAAGATGGCAGTGAGGAAGATGTGAATAGACCAGAGGAACCACCACAGCACCCTCCTCACCCAGGACACCACCATGGTCCTCCCCCACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 90 bp | TGGGGGAGGACCATGGTGGTGTCCTGGGTGAGGAGGGTGCTGTGGTaGTTCCTCTGGTCTATTCACATCTTCCTCACTGCCATCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: WGRTMVVSWVRRVLW*FLWSIHIFLTAIFI Trigger: GATGAAGATGGCAGTGAGGAAGATGTGAATAGACCAGAGGAACCACCACAGCACCCTCCTCACCCAGGACACCACCATGGTCCTCCCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CAA 90 bp | GTTTTGGATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATGGGGGTGGGCCTTGTaGGTTTCCAGGCCTAAGGGG | + |
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Preference number: 5 (lower is better) Translates to: VLDVSMIYISRNKVVITEWGWAL*VSRPKG Trigger: CCCCTTAGGCCTGGAAACCAACAAGGCCCACCCCCA...TTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATCCAAAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CAA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGTGGGGGTGGGCCTTGTaGGTTTCCAGGCTGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: DVSMIYISRNKVVITEFWWGWAL*VSRLRR Trigger: CCTCCTCAGCCTGGAAACCAACAAGGCCCACCCCCA...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CAA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATTGGGGGTGGGCCTTGTaGGTTTCCAGGCCTAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: VRASQLTESEFKSHTPQNWGWAL*VSRPRG Trigger: CCCCCTAGGCCTGGAAACCAACAAGGCCCACCCCCA...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CAA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGCTGTGGGGGTGGGCCTaGTTGGTTTCCAGGCCTAGG | + |
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Preference number: 5 (lower is better) Translates to: DVSMIYISRNKVVITEFWLWGWA*LVSRPR Trigger: CCTAGGCCTGGAAACCAACAAGGCCCACCCCCACAG...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CAA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATCTGTGGGGGTGGGCCTaGTTGGTTTCCAGGCCTAAG | + |
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Preference number: 5 (lower is better) Translates to: VRASQLTESEFKSHTPQNLWGWA*LVSRPK Trigger: CTTAGGCCTGGAAACCAACAAGGCCCACCCCCACAG...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CAA 90 bp | GTTAGAGCTTCACAGTTGACTGAGAGTGAATTTAAATCACATACACCACAGAATATGATGACCATACCCTaGGCTCTGCTCTCCCATCTC | + |
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Preference number: 5 (lower is better) Translates to: VRASQLTESEFKSHTPQNMMTIP*ALLSHL Trigger: GAGATGGGAGAGCAGAGCCAAGGGTATGGTCATCAT...ATTCTGTGGTGTATGTGATTTAAATTCACTCTCAGTCAACTGTGAAGCTCTAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CAA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGCTCCAGGAGGTGGTTTaGGAAAATGATGACCATACC | + |
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Preference number: 5 (lower is better) Translates to: DVSMIYISRNKVVITEFWLQEVV*ENDDHT Trigger: GGTATGGTCATCATTTTCCAAAACCACCTCCTGGAG...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS-3UTR CAA 90 bp | GATGTATCCATGATCTATATCTCTAGGAACAAGGTGGTCATCACTGAATTTTGGGTGACCACAGGTAACTaGGCTGTTCATTGTTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: DVSMIYISRNKVVITEFWVTTGN*AVHCFH Trigger: ATGGAAACAATGAACAGCCAAGTTACCTGTGGTCAC...CCAAAATTCAGTGATGACCACCTTGTTCCTAGAGATATAGATCATGGATACATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 72 bp | TGTCCCTGTGGGCCTCCCTGTGGGGGTGGTCCTTCATaGTTCCCAGGCCTAAGGGGTCCCTGTGGGCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: CPCGPPCGGGPS*FPGLRGPCGPP Trigger: GGGAGGCCCACAGGGACCCCTTAGGCCTGGGAACCATGAAGGACCACCCCCACAGGGAGGCCCACAGGGACA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 72 bp | GGGGCCTCCCTGTGGGGGAGGACCATGGTGGTGTCCTaGGTGAGGAGGGTGCTGTGGTGGTTCCTCTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: GASLWGRTMVVS*VRRVLWWFLWS Trigger: AGACCAGAGGAACCACCACAGCACCCTCCTCACCCAGGACACCACCATGGTCCTCCCCCACAGGGAGGCCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 72 bp | AGGCCTAGGGTGTCCCTGTGGGCCTCCCTGTGGGGGTaGTCCTTCATGGTTCCCAGGCCTAAGGGGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: RPRVSLWASLWG*SFMVPRPKGSL Trigger: CAGGGACCCCTTAGGCCTGGGAACCATGAAGGACCACCCCCACAGGGAGGCCCACAGGGACACCCTAGGCCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 72 bp | GTTACCAGGCCTAGGGTGTCCCTGTGGGCCTCCCTGTaGGGGTGGTCCTTCATGGTTCCCAGGCCTAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: VTRPRVSLWASL*GWSFMVPRPKG Trigger: CCCCTTAGGCCTGGGAACCATGAAGGACCACCCCCACAGGGAGGCCCACAGGGACACCCTAGGCCTGGTAAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 72 bp | TGGGCCTTGTTGGTTACCAGGCCTAGGGTGTCCCTGTaGGCCTCCCTGTGGGGGTGGTCCTTCATGGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: WALLVTRPRVSL*ASLWGWSFMVP Trigger: GGGAACCATGAAGGACCACCCCCACAGGGAGGCCCACAGGGACACCCTAGGCCTGGTAACCAACAAGGCCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CAA 72 bp | AGGTCTCTGAAGACCTCCCTGTGGAGGTGGGCCTTGTaGGTTACCAGGCCTAGGGTGTCCCTGTGGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RSLKTSLWRWAL*VTRPRVSLWAS Trigger: GGAGGCCCACAGGGACACCCTAGGCCTGGTAACCAACAAGGCCCACCTCCACAGGGAGGTCTTCAGAGACCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CAA 72 bp | AGGAGGTCTCTGAAGACCTCCCTGTGGAGGTGGGCCTaGTTGGTTACCAGGCCTAGGGTGTCCCTGTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: RRSLKTSLWRWA*LVTRPRVSLWA Trigger: GGCCCACAGGGACACCCTAGGCCTGGTAACCAACAAGGCCCACCTCCACAGGGAGGTCTTCAGAGACCTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 72 bp | AGGCTGAGGAGGTCTCTGAAGACCTCCCTGTGGAGGTaGGCCTTGTTGGTTACCAGGCCTAGGGTGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: RLRRSLKTSLWR*ALLVTRPRVSL Trigger: CAGGGACACCCTAGGCCTGGTAACCAACAAGGCCCACCTCCACAGGGAGGTCTTCAGAGACCTCCTCAGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CCA 72 bp | GTGTCCTGGGTGAGGAGGGTGCTGTGGTGGTTCCTCTaGTCTATTCACATCTTCCTCACTGCCATCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: VSWVRRVLWWFL*SIHIFLTAIFI Trigger: GATGAAGATGGCAGTGAGGAAGATGTGAATAGACCAGAGGAACCACCACAGCACCCTCCTCACCCAGGACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CAA 72 bp | TGGGAGGTCTTGGGGGCATTCCTCCAGGAGGTGGTTTaGGAAAATGATGACCATACCCTTGGCTCTGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: WEVLGAFLQEVV*ENDDHTLGSAL Trigger: GAGAGCAGAGCCAAGGGTATGGTCATCATTTTCCAAAACCACCTCCTGGAGGAATGCCCCCAAGACCTCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CAA 72 bp | ACTTGGCTGTTCATTGTTTCCATATTGGGGTGGGCCTaGATGGTTTCGTGGCTGAGGAGGTCTCTGAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: TWLFIVSILGWA*MVSWLRRSLRA Trigger: GGCCCTCAGAGACCTCCTCAGCCACGAAACCATCAAGGCCCACCCCAATATGGAAACAATGAACAGCCAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS TCA 72 bp | GTCTTCGTAGGTGATCTCTTCATCTTGTCTCTGAGCTaGGCTCAGGACCAGCAAAGCTGCTGTGAGCAGGAC | + |
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Preference number: 6 (lower is better) Translates to: VFVGDLFILSLS*AQDQQSCCEQD Trigger: GTCCTGCTCACAGCAGCTTTGCTGGTCCTGAGCTCAGCTCAGAGACAAGATGAAGAGATCACCTACGAAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS CAA 90 bp | CATCAGAACTGGGAGGTCTTGGGGGCATTCCTCCAGGAGGTGGTTTaGGAAAATGATGACCATACCCTTGGCTCTGCTCTCCCATCTCTA | + |
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Preference number: 6 (lower is better) Translates to: HQNWEVLGAFLQEVV*ENDDHTLGSALPSL Trigger: TAGAGATGGGAGAGCAGAGCCAAGGGTATGGTCATCATTTTCCAAAACCACCTCCTGGAGGAATGCCCCCAAGACCTCCCAGTTCTGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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| CDS TCA 72 bp | CCATCTCTAGGAGCTGAGAATTTGAGTCTTCGTAGGTaGTCTCTTCATCTTGTCTCTGAGCTGAGCTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PSLGAENLSLRR*SLHLVSELSSG Trigger: TCCTGAGCTCAGCTCAGAGACAAGATGAAGAGATCACCTACGAAGACTCAAATTCTCAGCTCCTAGAGATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048686.9 |
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