RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRPF6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002455

Ensembl transcript IDs: ENSMUST00000002529.7, ENSMUST00000136481.8

Found 263 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTCGCTGCTCCGAGCCTTaGCCAGTAGCCTCCGGGCTC +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPRCSEP*PVASGL
Trigger: GAGCCCGGAGGCTACTGGCCAAGGCTCGGAGCAGCG...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTGGGCAGTGGGTGCGCTaGTCCGAGCCTTGGCCAGTA +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPGQWVR*SEPWPV
Trigger: TACTGGCCAAGGCTCGGAGCAGCGCACCCACTGCCC...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTGCACGCATGACAGCCTaGCACGTGGCCACACTCCCT +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPARMTA*HVATLP
Trigger: AGGGAGTGTGGCCACGTGCCAGGCTGTCATGCGTGC...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCACAGACTGCGGGAGATaGCGGACAGCTTGTGCCACC +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLTDCGR*RTACAT
Trigger: GGTGGCACAAGCTGTCCGTCATCTCCCGCAGTCTGT...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTCGATTACAGCACGCATaGCAGCCTGGCACGTGGCCA +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPRLQHA*QPGTWP
Trigger: TGGCCACGTGCCAGGCTGTCATGCGTGCTGTAATCG...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTCCCTGCCAGCCACTTTaGCTTGGCACCCATGAGCCA +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPPCQPL*LGTHEP
Trigger: TGGCTCATGGGTGCCAAGTCAAAGTGGCTGGCAGGG...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCAGCCAGTGGCACCCCTaGCCAGCCCGGGTACGTAGC +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTSQWHP*PARVRS
Trigger: GCTACGTACCCGGGCTGGGCAGGGGTGCCACTGGCT...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTCTTCGCTGTTGGGGTTaGCCTGAAAGGCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPLRCWG*PERPGP
Trigger: TGGCCCTGGCCTTTCAGGCCAACCCCAACAGCGAAG...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTAGCAGGCCCGATGTCTaGTCGGGTGGTGAAGCCAGT +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPSRPDV*SGGEAS
Trigger: ACTGGCTTCACCACCCGATCAGACATCGGGCCTGCT...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTACAGACTGCGGGAGATaGCGGACAGCTTGTGCCACC +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPTDCGR*RTACAT
Trigger: GGTGGCACAAGCTGTCCGTCATCTCCCGCAGTCTGT...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTTCCTCACACAGCTCCTaGGCCGCAGAGATGTTCCCC +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPSSHSS*AAEMFP
Trigger: GGGGAACATCTCTGCGGCGCAGGAGCTGTGTGAGGA...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCACTCCAGGGCATTGTaGGCCACACAACTGTCAGCG +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLHSRAL*ATQLSA
Trigger: CGCTGACAGTTGTGTGGCCCACAATGCCCTGGAGTG...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTTTCTTCCAGGCGAGCTaGTGCAATCCAAGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPFFQAS*CNPSWW
Trigger: CCACCAGCTTGGATTGCATCAGCTCGCCTGGAAGAA...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCTGTTGGGGTTGGCCTaGAAGGCCAGGGCCAGGATG +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTLLGLA*KARARM
Trigger: CATCCTGGCCCTGGCCTTTCAGGCCAACCCCAACAG...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTAGCCAGTGGCACCCCTaGCCAGCCCGGGTACGTAGC +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPISQWHP*PARVRS
Trigger: GCTACGTACCCGGGCTGGGCAGGGGTGCCACTGGCT...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCATGACGGACAGCTTGTaGCACCACAGCCTTGGCTGT +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLMTDSL*HHSLGC
Trigger: ACAGCCAAGGCTGTGGTGGCACAAGCTGTCCGTCAT...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCGTGGCCACACTCCCTaGCCTGTCACACTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTRGHTP*PVTLLS
Trigger: GCTGAGGAGTGTGACAGGGCAGGGAGTGTGGCCACG...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCGGGCAGTGGGTGCGCTaGTCCGAGCCTTGGCCAGTA +
Preference number: 4 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVGQWVR*SEPWPV
Trigger: TACTGGCCAAGGCTCGGAGCAGCGCACCCACTGCCC...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCTTCCCTGGTGGGGCATaGCGATCATCCACAGGATCA +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLFPGGA*RSSTGS
Trigger: TGATCCTGTGGATGATCGCCATGCCCCACCAGGGAA...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTAGTTCTCTTCCCTGGTaGGGCATGGCGATCATCCAC +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPSSLPW*GMAIIH
Trigger: GTGGATGATCGCCATGCCCCACCAGGGAAGAGAACT...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCGGCATCGCCAACTTCTaGGATGCTCAGCCACTCTTC +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLGIANF*DAQPLF
Trigger: GAAGAGTGGCTGAGCATCCCAGAAGTTGGCGATGCC...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTGGCATCGCCAACTTCTaGGATGCTCAGCCACTCTTC +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPGIANF*DAQPLF
Trigger: GAAGAGTGGCTGAGCATCCCAGAAGTTGGCGATGCC...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTCTGTCAGGTAGCCTTTaGGGTCCACAACAGTCTGCC +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPLSGSL*GPQQSA
Trigger: GGCAGACTGTTGTGGACCCCAAAGGCTACCTGACAG...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTCGCTGCTCCGAGCCTTaGCCAGTAGCCTCCGGGCTC +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPRCSEP*PVASGL
Trigger: GAGCCCGGAGGCTACTGGCCAAGGCTCGGAGCAGCG...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCAGCAGGCCCGATGTCTaGTCGGGTGGTGAAGCCAGT +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTSRPDV*SGGEAS
Trigger: ACTGGCTTCACCACCCGATCAGACATCGGGCCTGCT...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTGGCATCCCCCAGATCTaGGTCAATCTTCACAGTGCG +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPGIPQI*VNLHSA
Trigger: CGCACTGTGAAGATTGACTCAGATCTGGGGGATGCC...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCGCCAACTTCTGGGATaGTCAGCCACTCTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLRQLLG*SATLLL
Trigger: CAGAAGAAGAGTGGCTGAGCATCCCAGAAGTTGGCG...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTGGGACAGCACTCTACTaGTCGGCTCAGCATGATTCT +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPGTALY*SAQHDS
Trigger: AGAATCATGCTGAGCCGAGCAGTAGAGTGCTGTCCC...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACGTGGCCACACTCCCTaGCCTGTCACACTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSRGHTP*PVTLLS
Trigger: GCTGAGGAGTGTGACAGGGCAGGGAGTGTGGCCACG...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCGAGTTAGGGCACTCCTaGAGCGCCTTGGCCATGAGG +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTELGHS*SALAMR
Trigger: CCTCATGGCCAAGGCGCTGCAGGAGTGCCCTAACTC...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTTTCTCTGGGGCCTTaGCTCAAGGAAGACAGCTTC +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLLSLGP*LKEDSF
Trigger: GAAGCTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAG...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCTCACCTCCTCCTGTTaGTCCTCAGTTCCATGCTGC +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPLTSSC*SSVPCC
Trigger: GCAGCATGGAACTGAGGAGCAACAGGAGGAGGTGAG...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCATTCCACCTGGGTATaGAGTGTTCAGGCCTCCCGG +
Preference number: 4 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPHSTWV*SVQASR
Trigger: CCGGGAGGCCTGAACACTCCATACCCAGGTGGAATG...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTTCTGAGTGTTCCCATTaGCCTCCTCCAGTTTGGCAG +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPSECSH*PPPVWQ
Trigger: CTGCCAAACTGGAGGAGGCCAATGGGAACACTCAGA...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCATCTTCACAGTGCGATaGAACCACTCCCGAGCCTTG +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLIFTVR*NHSRAL
Trigger: CAAGGCTCGGGAGTGGTTCCATCGCACTGTGAAGAT...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTCTTGTAACTTTCCAGTaGCTTCTTCCAGGCGAGCTG +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPLVTFQ*LLPGEL
Trigger: CAGCTCGCCTGGAAGAAGTCACTGGAAAGTTACAAG...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCCCCTGCCAGCCACTTTaGCTTGGCACCCATGAGCCA +
Preference number: 4 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVPCQPL*LGTHEP
Trigger: TGGCTCATGGGTGCCAAGTCAAAGTGGCTGGCAGGG...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTCTGTTGGGGTTGGCCTaGAAGGCCAGGGCCAGGATG +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPILLGLA*KARARM
Trigger: CATCCTGGCCCTGGCCTTTCAGGCCAACCCCAACAG...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTTCCTCTGCCAGTTGGTaGTATCCTTGGACACAGCAC +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPSSASW*YPWTQH
Trigger: GTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGA...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTATCCACAGGATCATTTaGATCCCGAGCAGGCCCGAT +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPIHRII*IPSRPD
Trigger: ATCGGGCCTGCTCGGGATGCAAATGATCCTGTGGAT...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCCCTGCTCCTCAATCTaGCCCTTCATCATCCACAGC +
Preference number: 4 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPPCSSI*PFIIHS
Trigger: GCTGTGGATGATGAAGGGGCAGATTGAGGAGCAGGG...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTTCCATCAGTTCTCCCTaGTCCTCAATCTGCCCCTTC +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPSISSP*SSICPF
Trigger: GAAGGGGCAGATTGAGGAGCAGGGAGAACTGATGGA...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTAGGTGTCATTCCACCTaGGTATGGAGTGTTCAGGCC +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPRCHST*VWSVQA
Trigger: GGCCTGAACACTCCATACCCAGGTGGAATGACACCT...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTGTCAGGTAGCCTTTaGGGTCCACAACAGTCTGCC +
Preference number: 4 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPLSGSL*GPQQSA
Trigger: GGCAGACTGTTGTGGACCCCAAAGGCTACCTGACAG...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTGCACGCATGACAGCCTaGCACGTGGCCACACTCCCT +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPARMTA*HVATLP
Trigger: AGGGAGTGTGGCCACGTGCCAGGCTGTCATGCGTGC...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTAGATCTCTTCGCTGTTaGGGTTGGCCTGAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPRSLRC*GWPERP
Trigger: TGGCCTTTCAGGCCAACCCCAACAGCGAAGAGATCT...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCTCTTGGTCTTTCTCTaGGGCCTTGCCTCAAGGAAG +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPLLVFL*GLASRK
Trigger: CTTCCTTGAGGCAAGGCCCCAGAGAAAGACCAAGAG...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCTCATCATCAGCCGCCTaGTTTTTCTTCATCTGGTCC +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLSSSAA*FFFIWS
Trigger: GGACCAGATGAAGAAAAATCAGGCGGCTGATGATGA...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCTTGACTTGGCACCCATaGGCCATAGCACCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTLTWHP*AIAPLP
Trigger: AGGCAGAGGTGCTATGGCTCATGGGTGCCAAGTCAA...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCATGACGGACAGCTTGTaGCACCACAGCCTTGGCTGT +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTMTDSL*HHSLGC
Trigger: ACAGCCAAGGCTGTGGTGGCACAAGCTGTCCGTCAT...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCATCCAGGTGTGTTTaGGATCTTCCTCCTCAATCC +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPPSRCV*DLPPQS
Trigger: GGATTGAGGAGGAAGATCGCAAACACACCTGGATGG...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCGGCATATATGGCTCGTaGACACTCCAGGGCATTGTG +
Preference number: 4 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPGIYGS*TLQGIV
Trigger: CACAATGCCCTGGAGTGTGCACGAGCCATATATGCC...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCAGCCCTCTGCAAGAGTaGTTCCAGAGACTCCCTGGT +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTSPLQE*FQRLPG
Trigger: ACCAGGGAGTCTCTGGAAGCACTCTTGCAGAGGGCT...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCGAGCACGTGTCAGCTaGCCAATCTTTTCCTCTAGT +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPRARVS*PIFSSS
Trigger: ACTAGAGGAAAAGATTGGGCAGCTGACACGTGCTCG...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTGAGTTAGGGCACTCCTaGAGCGCCTTGGCCATGAGG +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPELGHS*SALAMR
Trigger: CCTCATGGCCAAGGCGCTGCAGGAGTGCCCTAACTC...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCTTCCCTGGTGGGGCATaGCGATCATCCACAGGATCA +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTFPGGA*RSSTGS
Trigger: TGATCCTGTGGATGATCGCCATGCCCCACCAGGGAA...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCAGGTGTCATTCCACCTaGGTATGGAGTGTTCAGGCC +
Preference number: 4 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPRCHST*VWSVQA
Trigger: GGCCTGAACACTCCATACCCAGGTGGAATGACACCT...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCACTGAGTCAGATACCTaGCTAAGCCTCATGTCCATC +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLTESDT*LSLMSI
Trigger: GATGGACATGAGGCTTAGCCAGGTATCTGACTCAGT...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTTGCAATCCAAGCTGGTaGGTGATGAGGGTTTGTTTC +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPCNPSW*VMRVCF
Trigger: GAAACAAACCCTCATCACCCACCAGCTTGGATTGCA...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCGGGCATAGGCATATATaGCTCGTGCACACTCCAGGG +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTGHRHI*LVHTPG
Trigger: CCCTGGAGTGTGCACGAGCCATATATGCCTATGCCC...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTCTTCGCTGTTGGGGTTaGCCTGAAAGGCCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPILRCWG*PERPGP
Trigger: TGGCCCTGGCCTTTCAGGCCAACCCCAACAGCGAAG...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCAGATCTCTTCGCTGTTaGGGTTGGCCTGAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPRSLRC*GWPERP
Trigger: TGGCCTTTCAGGCCAACCCCAACAGCGAAGAGATCT...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCATTGACTTGGCACCCATaGGCCATAGCACCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSLTWHP*AIAPLP
Trigger: AGGCAGAGGTGCTATGGCTCATGGGTGCCAAGTCAA...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCAGCAGCGCCTTGGCCATaGGGGTATTGGCAATGTTCT +
Preference number: 4 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSAAPWP*GYWQCS
Trigger: AGAACATTGCCAATACCCTCATGGCCAAGGCGCTGC...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCTCCTCTGCCAGTTGGTaGTATCCTTGGACACAGCAC +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTSSASW*YPWTQH
Trigger: GTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGA...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTAGGTCTGAAAATTGCTaGTGGATTTTGGGACGTTCC +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPRSENC*WILGRS
Trigger: GGAACGTCCCAAAATCCAGCAGCAATTTTCAGACCT...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCGCCAACTTCTGGGATaGTCAGCCACTCTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTRQLLG*SATLLL
Trigger: CAGAAGAAGAGTGGCTGAGCATCCCAGAAGTTGGCG...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTACCACACACTTTTCTTaGTGGGGAAGACTTGTAGGG +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPTTHFS*WGRLVG
Trigger: CCCTACAAGTCTTCCCCAGCAAGAAAAGTGTGTGGT...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCAGGATGCTCCTTGCTaGAGGTACATCCCCTGCCAG +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVAQDAPC*RYIPCQ
Trigger: CTGGCAGGGGATGTACCTGCAGCAAGGAGCATCCTG...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCAGTCAATCTTCACAGTaGGATGGAACCACTCCCGAG +
Preference number: 4 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPSQSSQ*DGTTPE
Trigger: CTCGGGAGTGGTTCCATCGCACTGTGAAGATTGACT...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACTCACCTCCTCCTGTTaGTCCTCAGTTCCATGCTGC +
Preference number: 4 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSLTSSC*SSVPCC
Trigger: GCAGCATGGAACTGAGGAGCAACAGGAGGAGGTGAG...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTGTTGACGTTTGTTTCTaGCATCGCCAACTTCTGGGA +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPVDVCF*HRQLLG
Trigger: TCCCAGAAGTTGGCGATGCCAGAAACAAACGTCAAC...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTTTTATGTCCCCGCCATaGGTTGGGATCATGGAATTT +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPFMSPP*VGIMEF
Trigger: AAATTCCATGATCCCAACCCATGGCGGGGACATAAA...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCATAGCTCTACACTGGTaGGACAGCACTCTACTGCTC +
Preference number: 4 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPIALHW*DSTLLL
Trigger: GAGCAGTAGAGTGCTGTCCCACCAGTGTAGAGCTAT...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCACACACTTTTCTTGCTaGGGAAGACTTGTAGGGCAT +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLTHFSC*GRLVGH
Trigger: ATGCCCTACAAGTCTTCCCCAGCAAGAAAAGTGTGT...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTTCCAGAGACTCCCTaGTACCATGATTCTTCTCAA +
Preference number: 4 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLLPETP*YHDSSQ
Trigger: TTGAGAAGAATCATGGTACCAGGGAGTCTCTGGAAG...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTCGATTACAGCACGCATaGCAGCCTGGCACGTGGCCA +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVRLQHA*QPGTWP
Trigger: TGGCCACGTGCCAGGCTGTCATGCGTGCTGTAATCG...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTGCAGCGCCTTGGCCATaGGGGTATTGGCAATGTTCT +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPAAPWP*GYWQCS
Trigger: AGAACATTGCCAATACCCTCATGGCCAAGGCGCTGC...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGGCATCCCCCAGATCTaGGTCAATCTTCACAGTGCG +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPIGIPQI*VNLHSA
Trigger: CGCACTGTGAAGATTGACTCAGATCTGGGGGATGCC...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTTGGAACATGCTCAAGTaGTTTCCGAAGAACACGCTT +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPWNMLK*FPKNTL
Trigger: AAGCGTGTTCTTCGGAAAGCACTTGAGCATGTTCCA...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTTCCTCACACAGCTCCTaGGCCGCAGAGATGTTCCCC +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVSSHSS*AAEMFP
Trigger: GGGGAACATCTCTGCGGCGCAGGAGCTGTGTGAGGA...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTCCCTGCTCCTCAATCTaGCCCTTCATCATCCACAGC +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPPCSSI*PFIIHS
Trigger: GCTGTGGATGATGAAGGGGCAGATTGAGGAGCAGGG...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTAGTTCTCTTCCCTGGTaGGGCATGGCGATCATCCAC +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPSSLPW*GMAIIH
Trigger: GTGGATGATCGCCATGCCCCACCAGGGAAGAGAACT...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTCACAGTTCTCTTCCCTaGTGGGGCATGGCGATCATC +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPHSSLP*WGMAII
Trigger: GATGATCGCCATGCCCCACCAGGGAAGAGAACTGTG...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCAGCTTCTCATAACGTaGGTTCCGTTGACGTTTGTT +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPQLLIT*VPLTFV
Trigger: AACAAACGTCAACGGAACCCACGTTATGAGAAGCTG...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTCATGGGTTGGGATCATaGAATTTAGATCTGTCAGGT +
Preference number: 4 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPHGLGS*NLDLSG
Trigger: ACCTGACAGATCTAAATTCCATGATCCCAACCCATG...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCAGCCATAGCTCTACACTaGTGGGACAGCACTCTACTG +
Preference number: 4 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSAIALH*WDSTLL
Trigger: CAGTAGAGTGCTGTCCCACCAGTGTAGAGCTATGGC...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGGGCATAGGCATATATaGCTCGTGCACACTCCAGGG +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPIGHRHI*LVHTPG
Trigger: CCCTGGAGTGTGCACGAGCCATATATGCCTATGCCC...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCCTCTTGGTCTTTCTCTaGGGCCTTGCCTCAAGGAAG +
Preference number: 4 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVLLVFL*GLASRK
Trigger: CTTCCTTGAGGCAAGGCCCCAGAGAAAGACCAAGAG...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTGGGCATCCACACTCTTaGTCTTTCTCTGGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVAGHPHS*SFSGAL
Trigger: CAAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCC...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTGGGCATCCACACTCTTaGTCTTTCTCTGGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPGHPHS*SFSGAL
Trigger: CAAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCC...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACTTGTAACTTTCCAGTaGCTTCTTCCAGGCGAGCTG +
Preference number: 4 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSLVTFQ*LLPGEL
Trigger: CAGCTCGCCTGGAAGAAGTCACTGGAAAGTTACAAG...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTGGCATATATGGCTCGTaGACACTCCAGGGCATTGTG +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPGIYGS*TLQGIV
Trigger: CACAATGCCCTGGAGTGTGCACGAGCCATATATGCC...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTTCCATCAGTTCTCCCTaGTCCTCAATCTGCCCCTTC +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPISISSP*SSICPF
Trigger: GAAGGGGCAGATTGAGGAGCAGGGAGAACTGATGGA...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTAATGTTCTTCAGCCCTaGCCGGTACTCCAGCCGCAC +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVNVLQP*PVLQPH
Trigger: GTGCGGCTGGAGTACCGGGCAGGGCTGAAGAACATT...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTCTTTCTCTGGGGCCTTaGCTCAAGGAAGACAGCTTC +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPILSLGP*LKEDSF
Trigger: GAAGCTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAG...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCAGCTTCTCATAACGTaGGTTCCGTTGACGTTTGTT +
Preference number: 4 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPQLLIT*VPLTFV
Trigger: AACAAACGTCAACGGAACCCACGTTATGAGAAGCTG...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTCATTCCACCTGGGTATaGAGTGTTCAGGCCTCCCGG +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVHSTWV*SVQASR
Trigger: CCGGGAGGCCTGAACACTCCATACCCAGGTGGAATG...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCAGGGTATTCCTTGCCTaGCCAATCTTCCTCATGTCC +
Preference number: 4 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVRVFLA*PIFLMS
Trigger: GGACATGAGGAAGATTGGCCAGGCAAGGAATACCCT...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCATGGGTTGGGATCATaGAATTTAGATCTGTCAGGT +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPHGLGS*NLDLSG
Trigger: ACCTGACAGATCTAAATTCCATGATCCCAACCCATG...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCAGACATCTTCACTCTTaGGGCACATCTCTGTCCCTT +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTRHLHS*GTSLSL
Trigger: AAGGGACAGAGATGTGCCCCAAGAGTGAAGATGTCT...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTGCCATAGCTCTACACTaGTGGGACAGCACTCTACTG +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVAAIALH*WDSTLL
Trigger: CAGTAGAGTGCTGTCCCACCAGTGTAGAGCTATGGC...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTTCTGAGTGTTCCCATTaGCCTCCTCCAGTTTGGCAG +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPSECSH*PPPVWQ
Trigger: CTGCCAAACTGGAGGAGGCCAATGGGAACACTCAGA...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTCACTCCAGGGCATTGTaGGCCACACAACTGTCAGCG +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVHSRAL*ATQLSA
Trigger: CGCTGACAGTTGTGTGGCCCACAATGCCCTGGAGTG...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTATCTTCACAGTGCGATaGAACCACTCCCGAGCCTTG +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVAIFTVR*NHSRAL
Trigger: CAAGGCTCGGGAGTGGTTCCATCGCACTGTGAAGAT...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTTTCTTCCAGGCGAGCTaGTGCAATCCAAGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVFFQAS*CNPSWW
Trigger: CCACCAGCTTGGATTGCATCAGCTCGCCTGGAAGAA...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTCCATCCAGGTGTGTTTaGGATCTTCCTCCTCAATCC +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPPSRCV*DLPPQS
Trigger: GGATTGAGGAGGAAGATCGCAAACACACCTGGATGG...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCGAGCACGTGTCAGCTaGCCAATCTTTTCCTCTAGT +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVARARVS*PIFSSS
Trigger: ACTAGAGGAAAAGATTGGGCAGCTGACACGTGCTCG...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTAGTCAATCTTCACAGTaGGATGGAACCACTCCCGAG +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVASQSSQ*DGTTPE
Trigger: CTCGGGAGTGGTTCCATCGCACTGTGAAGATTGACT...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCGTTGACGTTTGTTTCTaGCATCGCCAACTTCTGGGA +
Preference number: 4 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVVDVCF*HRQLLG
Trigger: TCCCAGAAGTTGGCGATGCCAGAAACAAACGTCAAC...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTAGGGTATTCCTTGCCTaGCCAATCTTCCTCATGTCC +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVARVFLA*PIFLMS
Trigger: GGACATGAGGAAGATTGGCCAGGCAAGGAATACCCT...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCAGACATCTTCACTCTTaGGGCACATCTCTGTCCCTT +
Preference number: 4 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVRHLHS*GTSLSL
Trigger: AAGGGACAGAGATGTGCCCCAAGAGTGAAGATGTCT...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTATAGCTCTACACTGGTaGGACAGCACTCTACTGCTC +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPIIALHW*DSTLLL
Trigger: GAGCAGTAGAGTGCTGTCCCACCAGTGTAGAGCTAT...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCACACACTTTTCTTGCTaGGGAAGACTTGTAGGGCAT +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTTHFSC*GRLVGH
Trigger: ATGCCCTACAAGTCTTCCCCAGCAAGAAAAGTGTGT...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCTCATCATCCACAGCTTaGGGAAATCTTCATAGTGCC +
Preference number: 4 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTSSSTA*GNLHSA
Trigger: GGCACTATGAAGATTTCCCCAAGCTGTGGATGATGA...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTGTAGTCGTGCTTTCTTaGTGTCATTTATGTCCCCGC +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVAVVVLS*CHLCPR
Trigger: GCGGGGACATAAATGACATCAAGAAAGCACGACTAC...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTATCCACAGGATCATTTaGATCCCGAGCAGGCCCGAT +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVIHRII*IPSRPD
Trigger: ATCGGGCCTGCTCGGGATGCAAATGATCCTGTGGAT...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCATTCTTCTGTGACTTCTaGCAGCTTCCTCTTAAGGTC +
Preference number: 4 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSFFCDF*QLPLKV
Trigger: GACCTTAAGAGGAAGCTGGCAGAAGTCACAGAAGAA...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTCATCAGGGTATTCCTTaGCTGGCCAATCTTCCTCAT +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPIHQGIP*LANLPH
Trigger: ATGAGGAAGATTGGCCAGGCAAGGAATACCCTGATG...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTCATCAGGGTATTCCTTaGCTGGCCAATCTTCCTCAT +
Preference number: 4 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPHQGIP*LANLPH
Trigger: ATGAGGAAGATTGGCCAGGCAAGGAATACCCTGATG...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTACTGAGTCAGATACCTaGCTAAGCCTCATGTCCATC +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVATESDT*LSLMSI
Trigger: GATGGACATGAGGCTTAGCCAGGTATCTGACTCAGT...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTTGCAATCCAAGCTGGTaGGTGATGAGGGTTTGTTTC +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVACNPSW*VMRVCF
Trigger: GAAACAAACCCTCATCACCCACCAGCTTGGATTGCA...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCAGAGCCAAAGCGGTGTaGAATGAGGACATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVRAKAV*NEDISS
Trigger: TGAAGAAATGTCCTCATTCCACACCGCTTTGGCTCT...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTTGCATAAATAGCATCTaGTTCCTCATCATCTTTTTC +
Preference number: 4 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPCINSI*FLIIFF
Trigger: GAAAAAGATGATGAGGAAGCAGATGCTATTTATGCA...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTTTCTTCTGTGACTTCTaGCAGCTTCCTCTTAAGGTC +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPIFFCDF*QLPLKV
Trigger: GACCTTAAGAGGAAGCTGGCAGAAGTCACAGAAGAA...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTTTTATGTCCCCGCCATaGGTTGGGATCATGGAATTT +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPIFMSPP*VGIMEF
Trigger: AAATTCCATGATCCCAACCCATGGCGGGGACATAAA...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTCTTCCAGAGACTCCCTaGTACCATGATTCTTCTCAA +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPILPETP*YHDSSQ
Trigger: TTGAGAAGAATCATGGTACCAGGGAGTCTCTGGAAG...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CCA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTTCATCATCCACAGCTTaGGGAAATCTTCATAGTGCC +
Preference number: 4 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVASSSTA*GNLHSA
Trigger: GGCACTATGAAGATTTCCCCAAGCTGTGGATGATGA...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR TCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTTCATCATCAGCCGCCTaGTTTTTCTTCATCTGGTCC +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVSSSAA*FFFIWS
Trigger: GGACCAGATGAAGAAAAATCAGGCGGCTGATGATGA...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTAGGTCTGAAAATTGCTaGTGGATTTTGGGACGTTCC +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVRSENC*WILGRS
Trigger: GGAACGTCCCAAAATCCAGCAGCAATTTTCAGACCT...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTTTAAGGTCTGAAAATTaGTGCTGGATTTTGGGACGT +
Preference number: 4 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPILRSEN*CWILGR
Trigger: ACGTCCCAAAATCCAGCAGCAATTTTCAGACCTTAA...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR GCA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTCCTTTTATCCAGAGCTaGATAAATAGCATCTGCTTC +
Preference number: 4 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVPFIQS*INSICF
Trigger: GAAGCAGATGCTATTTATGCAGCTCTGGATAAAAGG...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS TCA 90 bp TTGCTGCAGGTACATCCCCTGCCAGCCACTTTGACTTGGCACCCATaGGCCATAGCACCTCTGCCTTGGGGCAGTGGGCTACAGCCCTCT +
Preference number: 5 (lower is better)
Translates to: LLQVHPLPATLTWHP*AIAPLPWGSGLQPS
Trigger: AGAGGGCTGTAGCCCACTGCCCCAAGGCAGAGGTGCTATGGCTCATGGGTGCCAAGTCAAAGTGGCTGGCAGGGGATGTACCTGCAGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 90 bp ACCGATTACAGCACGCATGACAGCCTGGCACGTGGCCACACTCCCTaGCCTGTCACACTCCTCAGCATCCTGGATCCACTGTTCGCGGTT +
Preference number: 5 (lower is better)
Translates to: TDYSTHDSLARGHTP*PVTLLSILDPLFAV
Trigger: AACCGCGAACAGTGGATCCAGGATGCTGAGGAGTGTGACAGGGCAGGGAGTGTGGCCACGTGCCAGGCTGTCATGCGTGCTGTAATCGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTGCGCTGCTCCGAGCCTaGGCCAGTAGCCTCCGGGCT +
Preference number: 5 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPALLRA*ASSLRA
Trigger: AGCCCGGAGGCTACTGGCCAAGGCTCGGAGCAGCGC...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp CAGCTCCCCTGTACCAGGTGTCATCAATCCAGGTGTCATTCCACCTaGGTATGGAGTGTTCAGGCCTCCCGGGTAGGGTGTGTTCAGACC +
Preference number: 5 (lower is better)
Translates to: QLPCTRCHQSRCHST*VWSVQASRVGCVQT
Trigger: GGTCTGAACACACCCTACCCGGGAGGCCTGAACACTCCATACCCAGGTGGAATGACACCTGGATTGATGACACCTGGTACAGGGGAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp TCTTCCTCCTCAATCCCAATACCGATTACAGCACGCATGACAGCCTaGCACGTGGCCACACTCCCTGCCCTGTCACACTCCTCAGCATCC +
Preference number: 5 (lower is better)
Translates to: SSSSIPIPITARMTA*HVATLPALSHSSAS
Trigger: GGATGCTGAGGAGTGTGACAGGGCAGGGAGTGTGGCCACGTGCCAGGCTGTCATGCGTGCTGTAATCGGTATTGGGATTGAGGAGGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp TTTGACTTGGCACCCATGAGCCATAGCACCTCTGCCTTGGGGCAGTaGGCTACAGCCCTCTGCAAGAGTGCTTCCAGAGACTCCCTGGTA +
Preference number: 5 (lower is better)
Translates to: FDLAPMSHSTSALGQ*ATALCKSASRDSLV
Trigger: TACCAGGGAGTCTCTGGAAGCACTCTTGCAGAGGGCTGTAGCCCACTGCCCCAAGGCAGAGGTGCTATGGCTCATGGGTGCCAAGTCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS TCA 90 bp CGGCCACCAGGACTAGGATTTCCCCAATCTTCCTCTGCCAGTTGGTaGTATCCTTGGACACAGCACACCACAGCTCTCCATGTCGGGGCT +
Preference number: 5 (lower is better)
Translates to: RPPGLGFPQSSSASW*YPWTQHTTALHVGA
Trigger: AGCCCCGACATGGAGAGCTGTGGTGTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGAAGATTGGGGAAATCCTAGTCCTGGTGGCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCATAGCACCTCTGCCTaGGGGCAGTGGGCTACAGCC +
Preference number: 5 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLHSTSA*GQWATA
Trigger: GGCTGTAGCCCACTGCCCCAAGGCAGAGGTGCTATG...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS TCA 90 bp GCCCGTAGGGAGGTGATGGCTCGGTCAATGATCTTTTCCACCATCTaGGTGTTCCCATTGGCCTCCTCCAGTTTGGCAGCTGTGATCCAG +
Preference number: 5 (lower is better)
Translates to: ARREVMARSMIFSTI*VFPLASSSLAAVIQ
Trigger: CTGGATCACAGCTGCCAAACTGGAGGAGGCCAATGGGAACACTCAGATGGTGGAAAAGATCATTGACCGAGCCATCACCTCCCTACGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 90 bp GATATCCTTGGACACAGCACACCACAGCTCTCCATGTCGGGGCTCTaGATTCTCACAGCGTTTCCTCACCTCCTCCTGTTGCTCCTCAGT +
Preference number: 5 (lower is better)
Translates to: DILGHSTPQLSMSGL*ILTAFPHLLLLLLS
Trigger: ACTGAGGAGCAACAGGAGGAGGTGAGGAAACGCTGTGAGAATGCAGAGCCCCGACATGGAGAGCTGTGGTGTGCTGTGTCCAAGGATATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 90 bp TTGATGCGGGCGGCCACCAGGACTAGGATTTCCCCAATCTTCCTCTaGCAGTTGGTGATATCCTTGGACACAGCACACCACAGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: LMRAATRTRISPIFL*QLVISLDTAHHSSP
Trigger: TGGAGAGCTGTGGTGTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGAAGATTGGGGAAATCCTAGTCCTGGTGGCCGCCCGCATCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp CCCTGTACCAGGTGTCATCAATCCAGGTGTCATTCCACCTGGGTATaGAGTGTTCAGGCCTCCCGGGTAGGGTGTGTTCAGACCTCCAAA +
Preference number: 5 (lower is better)
Translates to: PCTRCHQSRCHSTWV*SVQASRVGCVQTSK
Trigger: TTTGGAGGTCTGAACACACCCTACCCGGGAGGCCTGAACACTCCATACCCAGGTGGAATGACACCTGGATTGATGACACCTGGTACAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTGAGATGACGGACAGCTaGTGCCACCACAGCCTTGGC +
Preference number: 5 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPEMTDS*CHHSLG
Trigger: GCCAAGGCTGTGGTGGCACAAGCTGTCCGTCATCTC...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp GGCAGTGGGCTACAGCCCTCTGCAAGAGTGCTTCCAGAGACTCCCTaGTACCATGATTCTTCTCAAAGTAGGCAGCTCGTAACCACACAC +
Preference number: 5 (lower is better)
Translates to: GSGLQPSARVLPETP*YHDSSQSRQLVTTH
Trigger: GTGTGTGGTTACGAGCTGCCTACTTTGAGAAGAATCATGGTACCAGGGAGTCTCTGGAAGCACTCTTGCAGAGGGCTGTAGCCCACTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp GCACATGGGGGTCATGTTCACACTTCTTCAGGGCATCCACACTCTTaGTCTTTCTCTGGGGCCTTGCCTCAAGGAAGACAGCTTCAGACC +
Preference number: 5 (lower is better)
Translates to: AHGGHVHTSSGHPHS*SFSGALPQGRQLQT
Trigger: GGTCTGAAGCTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCCTGAAGAAGTGTGAACATGACCCCCATGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTGCCAGCCACTTTGACTaGGCACCCATGAGCCATAGC +
Preference number: 5 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPASHFD*APMSHS
Trigger: GCTATGGCTCATGGGTGCCAAGTCAAAGTGGCTGGC...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGCGCTGCTCCGAGCCTaGGCCAGTAGCCTCCGGGCT +
Preference number: 5 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPIALLRA*ASSLRA
Trigger: AGCCCGGAGGCTACTGGCCAAGGCTCGGAGCAGCGC...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCCTCACCTCCTCCTGTaGCTCCTCAGTTCCATGCTG +
Preference number: 5 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLPHLLL*LLSSML
Trigger: CAGCATGGAACTGAGGAGCAACAGGAGGAGGTGAGG...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp CGCCATGGGTTGGGATCATGGAATTTAGATCTGTCAGGTAGCCTTTaGGGTCCACAACAGTCTGCCCACTCACTGAGTCAGATACCTGGC +
Preference number: 5 (lower is better)
Translates to: RHGLGSWNLDLSGSL*GPQQSAHSLSQIPG
Trigger: GCCAGGTATCTGACTCAGTGAGTGGGCAGACTGTTGTGGACCCCAAAGGCTACCTGACAGATCTAAATTCCATGATCCCAACCCATGGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp TCAGTTCTCCCTGCTCCTCAATCTGCCCCTTCATCATCCACAGCTTaGGGAAATCTTCATAGTGCCTCAGAGCCTCCTCACACAGCTCCT +
Preference number: 5 (lower is better)
Translates to: SVLPAPQSAPSSSTA*GNLHSASEPPHTAP
Trigger: AGGAGCTGTGTGAGGAGGCTCTGAGGCACTATGAAGATTTCCCCAAGCTGTGGATGATGAAGGGGCAGATTGAGGAGCAGGGAGAACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp AAGGCCCAGGCATCCCCCAGATCTGAGTCAATCTTCACAGTGCGATaGAACCACTCCCGAGCCTTGGTGATCTTTCTTTCACTCCAGAAC +
Preference number: 5 (lower is better)
Translates to: KAQASPRSESIFTVR*NHSRALVIFLSLQN
Trigger: GTTCTGGAGTGAAAGAAAGATCACCAAGGCTCGGGAGTGGTTCCATCGCACTGTGAAGATTGACTCAGATCTGGGGGATGCCTGGGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCACTCCTGCAGCGCCTaGGCCATGAGGGTATTGGCA +
Preference number: 5 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPHSCSA*AMRVLA
Trigger: TGCCAATACCCTCATGGCCAAGGCGCTGCAGGAGTG...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTAGGGCATCCACACTCTaGGTCTTTCTCTGGGGCCTT +
Preference number: 5 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPRASTL*VFLWGL
Trigger: AAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCCT...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS TCA 90 bp CTGCAGTTCAAATTTGTAGAAGAAGGCCCAGGCATCCCCCAGATCTaGGTCAATCTTCACAGTGCGATGGAACCACTCCCGAGCCTTGGT +
Preference number: 5 (lower is better)
Translates to: LQFKFVEEGPGIPQI*VNLHSAMEPLPSLG
Trigger: ACCAAGGCTCGGGAGTGGTTCCATCGCACTGTGAAGATTGACTCAGATCTGGGGGATGCCTGGGCCTTCTTCTACAAATTTGAACTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp ACACACTTTTCTTGCTGGGGAAGACTTGTAGGGCATAGGCATATATaGCTCGTGCACACTCCAGGGCATTGTGGGCCACACAACTGTCAG +
Preference number: 5 (lower is better)
Translates to: THFSCWGRLVGHRHI*LVHTPGHCGPHNCQ
Trigger: CTGACAGTTGTGTGGCCCACAATGCCCTGGAGTGTGCACGAGCCATATATGCCTATGCCCTACAAGTCTTCCCCAGCAAGAAAAGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCATCCACAGGATCATTaGCATCCCGAGCAGGCCCGA +
Preference number: 5 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPHPQDH*HPEQAR
Trigger: TCGGGCCTGCTCGGGATGCAAATGATCCTGTGGATG...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTTTGGCCTCCTCCAGTTaGGCAGCTGTGATCCAGATG +
Preference number: 5 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPLASSS*AAVIQM
Trigger: CATCTGGATCACAGCTGCCAAACTGGAGGAGGCCAA...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCGCCAGCCACTTTGACTaGGCACCCATGAGCCATAGC +
Preference number: 5 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPASHFD*APMSHS
Trigger: GCTATGGCTCATGGGTGCCAAGTCAAAGTGGCTGGC...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp ATAACGTGGGTTCCGTTGACGTTTGTTTCTGGCATCGCCAACTTCTaGGATGCTCAGCCACTCTTCTTCTGTGACTTCTGCCAGCTTCCT +
Preference number: 5 (lower is better)
Translates to: ITWVPLTFVSGIANF*DAQPLFFCDFCQLP
Trigger: AGGAAGCTGGCAGAAGTCACAGAAGAAGAGTGGCTGAGCATCCCAGAAGTTGGCGATGCCAGAAACAAACGTCAACGGAACCCACGTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCTGTCCCCGCCATGGGTaGGGATCATGGAATTTAGAT +
Preference number: 5 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLCPRHG*GSWNLD
Trigger: ATCTAAATTCCATGATCCCAACCCATGGCGGGGACA...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCTTGGCCTCCTCCAGTTaGGCAGCTGTGATCCAGATG +
Preference number: 5 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPLASSS*AAVIQM
Trigger: CATCTGGATCACAGCTGCCAAACTGGAGGAGGCCAA...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCATAGCACCTCTGCCTaGGGGCAGTGGGCTACAGCC +
Preference number: 5 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVAHSTSA*GQWATA
Trigger: GGCTGTAGCCCACTGCCCCAAGGCAGAGGTGCTATG...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTGCTCGCTCGTATTCATaGTTCTCTGACTCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPARSYS*FSDSSF
Trigger: GAAGCTGGAGTCAGAGAACAATGAATACGAGCGAGC...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTAACCACTCCCGAGCCTaGGTGATCTTTCTTTCACTC +
Preference number: 5 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPNHSRA*VIFLSL
Trigger: GAGTGAAAGAAAGATCACCAAGGCTCGGGAGTGGTT...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTGAGATGACGGACAGCTaGTGCCACCACAGCCTTGGC +
Preference number: 5 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPEMTDS*CHHSLG
Trigger: GCCAAGGCTGTGGTGGCACAAGCTGTCCGTCATCTC...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCTTGATCTCTACACCATaGGCCCGTAGGGAGGTGATG +
Preference number: 5 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPLISTP*ARREVM
Trigger: CATCACCTCCCTACGGGCCAATGGTGTAGAGATCAA...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTTCCATCCAGGTGTGTTaGCGATCTTCCTCCTCAATC +
Preference number: 5 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPSIQVC*RSSSSI
Trigger: GATTGAGGAGGAAGATCGCAAACACACCTGGATGGA...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTGCTCGCTCGTATTCATaGTTCTCTGACTCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPARSYS*FSDSSF
Trigger: GAAGCTGGAGTCAGAGAACAATGAATACGAGCGAGC...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTCACTCCTGCAGCGCCTaGGCCATGAGGGTATTGGCA +
Preference number: 5 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPIHSCSA*AMRVLA
Trigger: TGCCAATACCCTCATGGCCAAGGCGCTGCAGGAGTG...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 90 bp GTGTTCCCATTGGCCTCCTCCAGTTTGGCAGCTGTGATCCAGATGTaGCGATCTGTAGGAATGTTCTCACGTGCTTTATTTAAGACCTTG +
Preference number: 5 (lower is better)
Translates to: VFPLASSSLAAVIQM*RSVGMFSRALFKTL
Trigger: CAAGGTCTTAAATAAAGCACGTGAGAACATTCCTACAGATCGGCACATCTGGATCACAGCTGCCAAACTGGAGGAGGCCAATGGGAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTCATCCACAGGATCATTaGCATCCCGAGCAGGCCCGA +
Preference number: 5 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPHPQDH*HPEQAR
Trigger: TCGGGCCTGCTCGGGATGCAAATGATCCTGTGGATG...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCTGTCCCCGCCATGGGTaGGGATCATGGAATTTAGAT +
Preference number: 5 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPCPRHG*GSWNLD
Trigger: ATCTAAATTCCATGATCCCAACCCATGGCGGGGACA...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCTCCATCCAGGTGTGTTaGCGATCTTCCTCCTCAATC +
Preference number: 5 (lower is better)
Translates to: KDSVGFVPIVHVLLLLSPSIQVC*RSSSSI
Trigger: GATTGAGGAGGAAGATCGCAAACACACCTGGATGGA...GGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTATAGCCCAGGGTTCTTaGGGTTTTTCAGACGAGATT +
Preference number: 5 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPIAQGS*GFSDEI
Trigger: AATCTCGTCTGAAAAACCCAAAGAACCCTGGGCTAT...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 90 bp CATGATTCTTCTCAAAGTAGGCAGCTCGTAACCACACACTTTTCTTaGTGGGGAAGACTTGTAGGGCATAGGCATATATGGCTCGTGCAC +
Preference number: 5 (lower is better)
Translates to: HDSSQSRQLVTTHFS*WGRLVGHRHIWLVH
Trigger: GTGCACGAGCCATATATGCCTATGCCCTACAAGTCTTCCCCAGCAAGAAAAGTGTGTGGTTACGAGCTGCCTACTTTGAGAAGAATCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp GATTCTTCTCAAAGTAGGCAGCTCGTAACCACACACTTTTCTTGCTaGGGAAGACTTGTAGGGCATAGGCATATATGGCTCGTGCACACT +
Preference number: 5 (lower is better)
Translates to: DSSQSRQLVTTHFSC*GRLVGHRHIWLVHT
Trigger: AGTGTGCACGAGCCATATATGCCTATGCCCTACAAGTCTTCCCCAGCAAGAAAAGTGTGTGGTTACGAGCTGCCTACTTTGAGAAGAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCATCAGGGTATTCCTaGCCTGGCCAATCTTCCTCA +
Preference number: 5 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSPSGYS*PGQSSS
Trigger: TGAGGAAGATTGGCCAGGCAAGGAATACCCTGATGG...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp GACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCACAATCGAACAGAGTTaGGAACATGCTCAAGTGCTT +
Preference number: 5 (lower is better)
Translates to: DSVGFVPIVHVLLLLSPLTIEQS*EHAQVL
Trigger: AAGCACTTGAGCATGTTCCAAACTCTGTTCGATTGT...GAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCCTACAATCGAACAGAGTTaGGAACATGCTCAAGTGCTT +
Preference number: 5 (lower is better)
Translates to: QCRVCAHCPCVAPIVTPPTIEQS*EHAQVL
Trigger: AAGCACTTGAGCATGTTCCAAACTCTGTTCGATTGT...AGGAGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCTTGGCCATGAGGGTATaGGCAATGTTCTTCAGCCCT +
Preference number: 5 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTLAMRV*AMFFSP
Trigger: AGGGCTGAAGAACATTGCCAATACCCTCATGGCCAA...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCATCTTTCTCTGGGGCCTaGCCTCAAGGAAGACAGCTT +
Preference number: 5 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSSFSGA*PQGRQL
Trigger: AAGCTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAGA...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTAGGGCATCCACACTCTaGGTCTTTCTCTGGGGCCTT +
Preference number: 5 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPRASTL*VFLWGL
Trigger: AAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCCT...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp ATCTTTCTTTCACTCCAGAACAACTTAGCCACAGCTAAAAGCACATaGGGGTCATGTTCACACTTCTTCAGGGCATCCACACTCTTGGTC +
Preference number: 5 (lower is better)
Translates to: IFLSLQNNLATAKST*GSCSHFFRASTLLV
Trigger: GACCAAGAGTGTGGATGCCCTGAAGAAGTGTGAACATGACCCCCATGTGCTTTTAGCTGTGGCTAAGTTGTTCTGGAGTGAAAGAAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCCCTCATAAGTTTCTAGTCTaGCCAAAGCAAGCCATAGCT +
Preference number: 5 (lower is better)
Translates to: RQCRVCAHCPCVAPIVTPHKFLV*PKQAIA
Trigger: AGCTATGGCTTGCTTTGGCAAGACTAGAAACTTATG...AGGGGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCTTGGCCATGAGGGTATaGGCAATGTTCTTCAGCCCT +
Preference number: 5 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVLAMRV*AMFFSP
Trigger: AGGGCTGAAGAACATTGCCAATACCCTCATGGCCAA...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTTCTTTCTCTGGGGCCTaGCCTCAAGGAAGACAGCTT +
Preference number: 5 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVASFSGA*PQGRQL
Trigger: AAGCTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAGA...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTCCTCACCTCCTCCTGTaGCTCCTCAGTTCCATGCTG +
Preference number: 5 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVPHLLL*LLSSML
Trigger: CAGCATGGAACTGAGGAGCAACAGGAGGAGGTGAGG...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 90 bp GCTCAGCATGATTCTAGCATCTTCAGGCTCTTCAAGCTCAACAGCTaGTTTCCACAATCGAACAGAGTTTGGAACATGCTCAAGTGCTTT +
Preference number: 5 (lower is better)
Translates to: AQHDSSIFRLFKLNS*FPQSNRVWNMLKCF
Trigger: AAAGCACTTGAGCATGTTCCAAACTCTGTTCGATTGTGGAAAGCAGCTGTTGAGCTTGAAGAGCCTGAAGATGCTAGAATCATGCTGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp GTCGGGGATCCACAGAAGTATGGTTCTCTCCAGTCTGTAAATGTTTaGCAAAGAAACTATCAGGAACAGGAGTCAGCTTCTCATAACGTG +
Preference number: 5 (lower is better)
Translates to: VGDPQKYGSLQSVNV*QRNYQEQESASHNV
Trigger: CACGTTATGAGAAGCTGACTCCTGTTCCTGATAGTTTCTTTGCCAAACATTTACAGACTGGAGAGAACCATACTTCTGTGGATCCCCGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp GTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCAATAACGTGGGTTCCGTaGACGTTTGTTTCTGGCATC +
Preference number: 5 (lower is better)
Translates to: VKDSVGFVPIVHVLLLLSITWVP*TFVSGI
Trigger: GATGCCAGAAACAAACGTCAACGGAACCCACGTTAT...TGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCACCAGTAGTCGTGCTTTCTaGATGTCATTTATGTCCCCG +
Preference number: 5 (lower is better)
Translates to: KRQCRVCAHCPCVAPIVTSSRAF*MSFMSP
Trigger: CGGGGACATAAATGACATCAAGAAAGCACGACTACT...GGTGACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCAACCACACACTTTTCTaGCTGGGGAAGACTTGTAGG +
Preference number: 5 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVNHTLF*LGKTCR
Trigger: CCTACAAGTCTTCCCCAGCAAGAAAAGTGTGTGGTT...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTAACCACTCCCGAGCCTaGGTGATCTTTCTTTCACTC +
Preference number: 5 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPNHSRA*VIFLSL
Trigger: GAGTGAAAGAAAGATCACCAAGGCTCGGGAGTGGTT...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp ATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTATAACGTGGGTTCCGTaGACGTTTGTTTCTGGCATC +
Preference number: 5 (lower is better)
Translates to: MSKRQCRVCAHCPCVAPIITWVP*TFVSGI
Trigger: GATGCCAGAAACAAACGTCAACGGAACCCACGTTAT...AATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AAACCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTTTGATCTCTACACCATaGGCCCGTAGGGAGGTGATG +
Preference number: 5 (lower is better)
Translates to: KPLMSKRQCRVCAHCPCVLISTP*ARREVM
Trigger: CATCACCTCCCTACGGGCCAATGGTGTAGAGATCAA...AACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTAACCACACACTTTTCTaGCTGGGGAAGACTTGTAGG +
Preference number: 5 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVANHTLF*LGKTCR
Trigger: CCTACAAGTCTTCCCCAGCAAGAAAAGTGTGTGGTT...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 90 bp TCTGTGACTTCTGCCAGCTTCCTCTTAAGGTCTGAAAATTGCTGCTaGATTTTGGGACGTTCCATTCGGTATTTCTCAATCTCTTCTTTC +
Preference number: 5 (lower is better)
Translates to: SVTSASFLLRSENCC*ILGRSIRYFSISSF
Trigger: GAAAGAAGAGATTGAGAAATACCGAATGGAACGTCCCAAAATCCAGCAGCAATTTTCAGACCTTAAGAGGAAGCTGGCAGAAGTCACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp TTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTAGTAGTCGTGCTTTCTaGATGTCATTTATGTCCCCG +
Preference number: 5 (lower is better)
Translates to: LMSKRQCRVCAHCPCVAPSSRAF*MSFMSP
Trigger: CGGGGACATAAATGACATCAAGAAAGCACGACTACT...AGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp AGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTCCTATTGTCCATAAGTTTCTAGTCTaGCCAAAGCAAGCCATAGCT +
Preference number: 5 (lower is better)
Translates to: SKRQCRVCAHCPCVAPIVHKFLV*PKQAIA
Trigger: AGCTATGGCTTGCTTTGGCAAGACTAGAAACTTATG...GACAATAGGAGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS-3UTR CAA 90 bp CCTTTAATGAGTAAAAGACAGTGTAGGGTTTGTGCCCATTGTCCATGTGTTGCTATAGCCCAGGGTTCTTaGGGTTTTTCAGACGAGATT +
Preference number: 5 (lower is better)
Translates to: PLMSKRQCRVCAHCPCVAIAQGS*GFSDEI
Trigger: AATCTCGTCTGAAAAACCCAAAGAACCCTGGGCTAT...AGCAACACATGGACAATGGGCACAAACCCTACACTGTCTTTTACTCATTAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS TCA 72 bp CACAGGATCATTTGCATCCCGAGCAGGCCCGATGTCTaGTCGGGTGGTGAAGCCAGTGGCACCCCTGCCCAG +
Preference number: 6 (lower is better)
Translates to: HRIICIPSRPDV*SGGEASGTPAQ
Trigger: CTGGGCAGGGGTGCCACTGGCTTCACCACCCGATCAGACATCGGGCCTGCTCGGGATGCAAATGATCCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp ATGAATACACGGGCAGTGGGTGCGCTGCTCCGAGCCTaGGCCAGTAGCCTCCGGGCTCGCTCGTATTCATTG +
Preference number: 6 (lower is better)
Translates to: MNTRAVGALLRA*ASSLRARSYSL
Trigger: CAATGAATACGAGCGAGCCCGGAGGCTACTGGCCAAGGCTCGGAGCAGCGCACCCACTGCCCGTGTATTCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp AGGATGCTCCTTGCTGCAGGTACATCCCCTGCCAGCCACTTTGACTaGGCACCCATGAGCCATAGCACCTCTGCCTTGGGGCAGTGGGCT +
Preference number: 6 (lower is better)
Translates to: RMLLAAGTSPASHFD*APMSHSTSALGQWA
Trigger: AGCCCACTGCCCCAAGGCAGAGGTGCTATGGCTCATGGGTGCCAAGTCAAAGTGGCTGGCAGGGGATGTACCTGCAGCAAGGAGCATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS TCA 72 bp GTACATCCCCTGCCAGCCACTTTGACTTGGCACCCATaGGCCATAGCACCTCTGCCTTGGGGCAGTGGGCTA +
Preference number: 6 (lower is better)
Translates to: VHPLPATLTWHP*AIAPLPWGSGL
Trigger: TAGCCCACTGCCCCAAGGCAGAGGTGCTATGGCTCATGGGTGCCAAGTCAAAGTGGCTGGCAGGGGATGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp CTTGCTGCAGGTACATCCCCTGCCAGCCACTTTGACTaGGCACCCATGAGCCATAGCACCTCTGCCTTGGGG +
Preference number: 6 (lower is better)
Translates to: LAAGTSPASHFD*APMSHSTSALG
Trigger: CCCCAAGGCAGAGGTGCTATGGCTCATGGGTGCCAAGTCAAAGTGGCTGGCAGGGGATGTACCTGCAGCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp GCCTTGGCCAGTAGCCTCCGGGCTCGCTCGTATTCATaGTTCTCTGACTCCAGCTTCACAGCCGCCAACCAG +
Preference number: 6 (lower is better)
Translates to: ALASSLRARSYS*FSDSSFTAANQ
Trigger: CTGGTTGGCGGCTGTGAAGCTGGAGTCAGAGAACAATGAATACGAGCGAGCCCGGAGGCTACTGGCCAAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp TTAGGGCACTCCTGCAGCGCCTTGGCCATGAGGGTATaGGCAATGTTCTTCAGCCCTGCCCGGTACTCCAGC +
Preference number: 6 (lower is better)
Translates to: LGHSCSALAMRV*AMFFSPARYSS
Trigger: GCTGGAGTACCGGGCAGGGCTGAAGAACATTGCCAATACCCTCATGGCCAAGGCGCTGCAGGAGTGCCCTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp CTGCTCCGAGCCTTGGCCAGTAGCCTCCGGGCTCGCTCGTATTCATaGTTCTCTGACTCCAGCTTCACAGCCGCCAACCAGATCTCTTCG +
Preference number: 6 (lower is better)
Translates to: LLRALASSLRARSYS*FSDSSFTAANQISS
Trigger: CGAAGAGATCTGGTTGGCGGCTGTGAAGCTGGAGTCAGAGAACAATGAATACGAGCGAGCCCGGAGGCTACTGGCCAAGGCTCGGAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp ATACCAGAGTTAGGGCACTCCTGCAGCGCCTTGGCCATGAGGGTATaGGCAATGTTCTTCAGCCCTGCCCGGTACTCCAGCCGCACTGAC +
Preference number: 6 (lower is better)
Translates to: IPELGHSCSALAMRV*AMFFSPARYSSRTD
Trigger: GTCAGTGCGGCTGGAGTACCGGGCAGGGCTGAAGAACATTGCCAATACCCTCATGGCCAAGGCGCTGCAGGAGTGCCCTAACTCTGGTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp ACAGACTTCATGAATACACGGGCAGTGGGTGCGCTGCTCCGAGCCTaGGCCAGTAGCCTCCGGGCTCGCTCGTATTCATTGTTCTCTGAC +
Preference number: 6 (lower is better)
Translates to: TDFMNTRAVGALLRA*ASSLRARSYSLFSD
Trigger: GTCAGAGAACAATGAATACGAGCGAGCCCGGAGGCTACTGGCCAAGGCTCGGAGCAGCGCACCCACTGCCCGTGTATTCATGAAGTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp GCTTCAGACCACAGGATACCAGAGTTAGGGCACTCCTGCAGCGCCTaGGCCATGAGGGTATTGGCAATGTTCTTCAGCCCTGCCCGGTAC +
Preference number: 6 (lower is better)
Translates to: ASDHRIPELGHSCSA*AMRVLAMFFSPARY
Trigger: GTACCGGGCAGGGCTGAAGAACATTGCCAATACCCTCATGGCCAAGGCGCTGCAGGAGTGCCCTAACTCTGGTATCCTGTGGTCTGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp CGGGCGGCCACCAGGACTAGGATTTCCCCAATCTTCCTCTGCCAGTaGGTGATATCCTTGGACACAGCACACCACAGCTCTCCATGTCGG +
Preference number: 6 (lower is better)
Translates to: RAATRTRISPIFLCQ*VISLDTAHHSSPCR
Trigger: CCGACATGGAGAGCTGTGGTGTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGAAGATTGGGGAAATCCTAGTCCTGGTGGCCGCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS TCA 72 bp TGTTCCCCAGAACCCACTCCAGCTTCACAGACTTCATaGATACACGGGCAGTGGGTGCGCTGCTCCGAGCCT +
Preference number: 6 (lower is better)
Translates to: CSPEPTPASQTS*IHGQWVRCSEP
Trigger: AGGCTCGGAGCAGCGCACCCACTGCCCGTGTATTCATGAAGTCTGTGAAGCTGGAGTGGGTTCTGGGGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp GGACACAGCACACCACAGCTCTCCATGTCGGGGCTCTaGATTCTCACAGCGTTTCCTCACCTCCTCCTGTTG +
Preference number: 6 (lower is better)
Translates to: GHSTPQLSMSGL*ILTAFPHLLLL
Trigger: CAACAGGAGGAGGTGAGGAAACGCTGTGAGAATGCAGAGCCCCGACATGGAGAGCTGTGGTGTGCTGTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp TCAATCCCAATACCGATTACAGCACGCATGACAGCCTaGCACGTGGCCACACTCCCTGCCCTGTCACACTCC +
Preference number: 6 (lower is better)
Translates to: SIPIPITARMTA*HVATLPALSHS
Trigger: GGAGTGTGACAGGGCAGGGAGTGTGGCCACGTGCCAGGCTGTCATGCGTGCTGTAATCGGTATTGGGATTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp TGCCTTGGGGCAGTGGGCTACAGCCCTCTGCAAGAGTaGTTCCAGAGACTCCCTGGTACCATGATTCTTCTC +
Preference number: 6 (lower is better)
Translates to: CLGAVGYSPLQE*FQRLPGTMILL
Trigger: GAGAAGAATCATGGTACCAGGGAGTCTCTGGAAGCACTCTTGCAGAGGGCTGTAGCCCACTGCCCCAAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp GCTTCAGACCACAGGATACCAGAGTTAGGGCACTCCTaGAGCGCCTTGGCCATGAGGGTATTGGCAATGTTC +
Preference number: 6 (lower is better)
Translates to: ASDHRIPELGHS*SALAMRVLAMF
Trigger: GAACATTGCCAATACCCTCATGGCCAAGGCGCTGCAGGAGTGCCCTAACTCTGGTATCCTGTGGTCTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp CAGGGCATCCACACTCTTGGTCTTTCTCTGGGGCCTTaGCTCAAGGAAGACAGCTTCAGACCACAGGATACC +
Preference number: 6 (lower is better)
Translates to: QGIHTLGLSLGP*LKEDSFRPQDT
Trigger: GGTATCCTGTGGTCTGAAGCTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp GCGGCCACCAGGACTAGGATTTCCCCAATCTTCCTCTaGCAGTTGGTGATATCCTTGGACACAGCACACCAC +
Preference number: 6 (lower is better)
Translates to: AATRTRISPIFL*QLVISLDTAHH
Trigger: GTGGTGTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGAAGATTGGGGAAATCCTAGTCCTGGTGGCCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp AGGTGTCATCAATCCAGGTGTCATTCCACCTGGGTATaGAGTGTTCAGGCCTCCCGGGTAGGGTGTGTTCAG +
Preference number: 6 (lower is better)
Translates to: RCHQSRCHSTWV*SVQASRVGCVQ
Trigger: CTGAACACACCCTACCCGGGAGGCCTGAACACTCCATACCCAGGTGGAATGACACCTGGATTGATGACACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp TGTACCAGGTGTCATCAATCCAGGTGTCATTCCACCTaGGTATGGAGTGTTCAGGCCTCCCGGGTAGGGTGT +
Preference number: 6 (lower is better)
Translates to: CTRCHQSRCHST*VWSVQASRVGC
Trigger: ACACCCTACCCGGGAGGCCTGAACACTCCATACCCAGGTGGAATGACACCTGGATTGATGACACCTGGTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp TCTTGCTGGGGAAGACTTGTAGGGCATAGGCATATATaGCTCGTGCACACTCCAGGGCATTGTGGGCCACAC +
Preference number: 6 (lower is better)
Translates to: SCWGRLVGHRHI*LVHTPGHCGPH
Trigger: GTGTGGCCCACAATGCCCTGGAGTGTGCACGAGCCATATATGCCTATGCCCTACAAGTCTTCCCCAGCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp TCACACTCCTCAGCATCCTGGATCCACTGTTCGCGGTaGATCTCTACACCATTGGCCCGTAGGGAGGTGATG +
Preference number: 6 (lower is better)
Translates to: SHSSASWIHCSR*ISTPLARREVM
Trigger: CATCACCTCCCTACGGGCCAATGGTGTAGAGATCAACCGCGAACAGTGGATCCAGGATGCTGAGGAGTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp CACAGGATACCAGAGTTAGGGCACTCCTGCAGCGCCTaGGCCATGAGGGTATTGGCAATGTTCTTCAGCCCT +
Preference number: 6 (lower is better)
Translates to: HRIPELGHSCSA*AMRVLAMFFSP
Trigger: AGGGCTGAAGAACATTGCCAATACCCTCATGGCCAAGGCGCTGCAGGAGTGCCCTAACTCTGGTATCCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp TCCTCAGCATCCTGGATCCACTGTTCGCGGTTGATCTCTACACCATaGGCCCGTAGGGAGGTGATGGCTCGGTCAATGATCTTTTCCACC +
Preference number: 6 (lower is better)
Translates to: SSASWIHCSRLISTP*ARREVMARSMIFST
Trigger: GGTGGAAAAGATCATTGACCGAGCCATCACCTCCCTACGGGCCAATGGTGTAGAGATCAACCGCGAACAGTGGATCCAGGATGCTGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp TACCTGGCTAAGCCTCATGTCCATCAGGGTATTCCTTaGCTGGCCAATCTTCCTCATGTCCAGCTCCCCTGT +
Preference number: 6 (lower is better)
Translates to: YLAKPHVHQGIP*LANLPHVQLPC
Trigger: ACAGGGGAGCTGGACATGAGGAAGATTGGCCAGGCAAGGAATACCCTGATGGACATGAGGCTTAGCCAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp CCTGCTCCTCAATCTGCCCCTTCATCATCCACAGCTTaGGGAAATCTTCATAGTGCCTCAGAGCCTCCTCAC +
Preference number: 6 (lower is better)
Translates to: PAPQSAPSSSTA*GNLHSASEPPH
Trigger: GTGAGGAGGCTCTGAGGCACTATGAAGATTTCCCCAAGCTGTGGATGATGAAGGGGCAGATTGAGGAGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp TCAGGGCATCCACACTCTTGGTCTTTCTCTGGGGCCTaGCCTCAAGGAAGACAGCTTCAGACCACAGGATAC +
Preference number: 6 (lower is better)
Translates to: SGHPHSWSFSGA*PQGRQLQTTGY
Trigger: GTATCCTGTGGTCTGAAGCTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp ATTTCCCCAATCTTCCTCTGCCAGTTGGTGATATCCTaGGACACAGCACACCACAGCTCTCCATGTCGGGGC +
Preference number: 6 (lower is better)
Translates to: ISPIFLCQLVIS*DTAHHSSPCRG
Trigger: GCCCCGACATGGAGAGCTGTGGTGTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGAAGATTGGGGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp AGCACATGGGGGTCATGTTCACACTTCTTCAGGGCATCCACACTCTaGGTCTTTCTCTGGGGCCTTGCCTCAAGGAAGACAGCTTCAGAC +
Preference number: 6 (lower is better)
Translates to: STWGSCSHFFRASTL*VFLWGLASRKTASD
Trigger: GTCTGAAGCTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCCTGAAGAAGTGTGAACATGACCCCCATGTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp AGGACTAGGATTTCCCCAATCTTCCTCTGCCAGTTGGTGATATCCTaGGACACAGCACACCACAGCTCTCCATGTCGGGGCTCTGCATTC +
Preference number: 6 (lower is better)
Translates to: RTRISPIFLCQLVIS*DTAHHSSPCRGSAF
Trigger: GAATGCAGAGCCCCGACATGGAGAGCTGTGGTGTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGAAGATTGGGGAAATCCTAGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp TCCACAACAGTCTGCCCACTCACTGAGTCAGATACCTaGCTAAGCCTCATGTCCATCAGGGTATTCCTTGCC +
Preference number: 6 (lower is better)
Translates to: STTVCPLTESDT*LSLMSIRVFLA
Trigger: GGCAAGGAATACCCTGATGGACATGAGGCTTAGCCAGGTATCTGACTCAGTGAGTGGGCAGACTGTTGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp GGTCATGTTCACACTTCTTCAGGGCATCCACACTCTTaGTCTTTCTCTGGGGCCTTGCCTCAAGGAAGACAG +
Preference number: 6 (lower is better)
Translates to: GHVHTSSGHPHS*SFSGALPQGRQ
Trigger: CTGTCTTCCTTGAGGCAAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCCTGAAGAAGTGTGAACATGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp GGGTCATGTTCACACTTCTTCAGGGCATCCACACTCTaGGTCTTTCTCTGGGGCCTTGCCTCAAGGAAGACA +
Preference number: 6 (lower is better)
Translates to: GSCSHFFRASTL*VFLWGLASRKT
Trigger: TGTCTTCCTTGAGGCAAGGCCCCAGAGAAAGACCAAGAGTGTGGATGCCCTGAAGAAGTGTGAACATGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp GCATTGTGGGCCACACAACTGTCAGCGTCTTCCATCCAGGTGTGTTaGCGATCTTCCTCCTCAATCCCAATACCGATTACAGCACGCATG +
Preference number: 6 (lower is better)
Translates to: ALWATQLSASSIQVC*RSSSSIPIPITARM
Trigger: CATGCGTGCTGTAATCGGTATTGGGATTGAGGAGGAAGATCGCAAACACACCTGGATGGAAGACGCTGACAGTTGTGTGGCCCACAATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS TCA 72 bp GGACTAGGATTTCCCCAATCTTCCTCTGCCAGTTGGTaGTATCCTTGGACACAGCACACCACAGCTCTCCAT +
Preference number: 6 (lower is better)
Translates to: GLGFPQSSSASW*YPWTQHTTALH
Trigger: ATGGAGAGCTGTGGTGTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGAAGATTGGGGAAATCCTAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp CGAGATTTCTCTAAAATGGCCCGAGCACGTGTCAGCTaGCCAATCTTTTCCTCTAGTCGGGAAAGCAAGAGC +
Preference number: 6 (lower is better)
Translates to: RDFSKMARARVS*PIFSSSRESKS
Trigger: GCTCTTGCTTTCCCGACTAGAGGAAAAGATTGGGCAGCTGACACGTGCTCGGGCCATTTTAGAGAAATCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp GCTTCTCATAACGTGGGTTCCGTTGACGTTTGTTTCTaGCATCGCCAACTTCTGGGATGCTCAGCCACTCTT +
Preference number: 6 (lower is better)
Translates to: ASHNVGSVDVCF*HRQLLGCSATL
Trigger: AAGAGTGGCTGAGCATCCCAGAAGTTGGCGATGCCAGAAACAAACGTCAACGGAACCCACGTTATGAGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp GCATCCCCCAGATCTGAGTCAATCTTCACAGTGCGATaGAACCACTCCCGAGCCTTGGTGATCTTTCTTTCA +
Preference number: 6 (lower is better)
Translates to: ASPRSESIFTVR*NHSRALVIFLS
Trigger: TGAAAGAAAGATCACCAAGGCTCGGGAGTGGTTCCATCGCACTGTGAAGATTGACTCAGATCTGGGGGATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp CCAGCCGCACTGACTCCAACCATAGCCCAGGGTTCTTaGGGTTTTTCAGACGAGATTTCTCTAAAATGGCCC +
Preference number: 6 (lower is better)
Translates to: PAALTPTIAQGS*GFSDEISLKWP
Trigger: GGGCCATTTTAGAGAAATCTCGTCTGAAAAACCCAAAGAACCCTGGGCTATGGTTGGAGTCAGTGCGGCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp ACCAGGACTAGGATTTCCCCAATCTTCCTCTGCCAGTaGGTGATATCCTTGGACACAGCACACCACAGCTCT +
Preference number: 6 (lower is better)
Translates to: TRTRISPIFLCQ*VISLDTAHHSS
Trigger: AGAGCTGTGGTGTGCTGTGTCCAAGGATATCACCAACTGGCAGAGGAAGATTGGGGAAATCCTAGTCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp GAAACTATCAGGAACAGGAGTCAGCTTCTCATAACGTGGGTTCCGTaGACGTTTGTTTCTGGCATCGCCAACTTCTGGGATGCTCAGCCA +
Preference number: 6 (lower is better)
Translates to: ETIRNRSQLLITWVP*TFVSGIANFWDAQP
Trigger: TGGCTGAGCATCCCAGAAGTTGGCGATGCCAGAAACAAACGTCAACGGAACCCACGTTATGAGAAGCTGACTCCTGTTCCTGATAGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp CCACACAACTGTCAGCGTCTTCCATCCAGGTGTGTTTaGGATCTTCCTCCTCAATCCCAATACCGATTACAG +
Preference number: 6 (lower is better)
Translates to: PHNCQRLPSRCV*DLPPQSQYRLQ
Trigger: CTGTAATCGGTATTGGGATTGAGGAGGAAGATCGCAAACACACCTGGATGGAAGACGCTGACAGTTGTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp TTGGGATCATGGAATTTAGATCTGTCAGGTAGCCTTTaGGGTCCACAACAGTCTGCCCACTCACTGAGTCAG +
Preference number: 6 (lower is better)
Translates to: LGSWNLDLSGSL*GPQQSAHSLSQ
Trigger: CTGACTCAGTGAGTGGGCAGACTGTTGTGGACCCCAAAGGCTACCTGACAGATCTAAATTCCATGATCCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp AGGAACAGGAGTCAGCTTCTCATAACGTGGGTTCCGTaGACGTTTGTTTCTGGCATCGCCAACTTCTGGGAT +
Preference number: 6 (lower is better)
Translates to: RNRSQLLITWVP*TFVSGIANFWD
Trigger: ATCCCAGAAGTTGGCGATGCCAGAAACAAACGTCAACGGAACCCACGTTATGAGAAGCTGACTCCTGTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp GAAACTATCAGGAACAGGAGTCAGCTTCTCATAACGTaGGTTCCGTTGACGTTTGTTTCTGGCATCGCCAAC +
Preference number: 6 (lower is better)
Translates to: ETIRNRSQLLIT*VPLTFVSGIAN
Trigger: GTTGGCGATGCCAGAAACAAACGTCAACGGAACCCACGTTATGAGAAGCTGACTCCTGTTCCTGATAGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp CAAAGTAGGCAGCTCGTAACCACACACTTTTCTTGCTaGGGAAGACTTGTAGGGCATAGGCATATATGGCTC +
Preference number: 6 (lower is better)
Translates to: QSRQLVTTHFSC*GRLVGHRHIWL
Trigger: GAGCCATATATGCCTATGCCCTACAAGTCTTCCCCAGCAAGAAAAGTGTGTGGTTACGAGCTGCCTACTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp TCACTCCAGAACAACTTAGCCACAGCTAAAAGCACATaGGGGTCATGTTCACACTTCTTCAGGGCATCCACA +
Preference number: 6 (lower is better)
Translates to: SLQNNLATAKST*GSCSHFFRAST
Trigger: TGTGGATGCCCTGAAGAAGTGTGAACATGACCCCCATGTGCTTTTAGCTGTGGCTAAGTTGTTCTGGAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp CAGGCTCTTCAAGCTCAACAGCTGCTTTCCACAATCGAACAGAGTTaGGAACATGCTCAAGTGCTTTCCGAAGAACACGCTTCTTTGCTC +
Preference number: 6 (lower is better)
Translates to: QALQAQQLLSTIEQS*EHAQVLSEEHASLL
Trigger: GAGCAAAGAAGCGTGTTCTTCGGAAAGCACTTGAGCATGTTCCAAACTCTGTTCGATTGTGGAAAGCAGCTGTTGAGCTTGAAGAGCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp AGATCTGAGTCAATCTTCACAGTGCGATGGAACCACTCCCGAGCCTaGGTGATCTTTCTTTCACTCCAGAACAACTTAGCCACAGCTAAA +
Preference number: 6 (lower is better)
Translates to: RSESIFTVRWNHSRA*VIFLSLQNNLATAK
Trigger: TTTAGCTGTGGCTAAGTTGTTCTGGAGTGAAAGAAAGATCACCAAGGCTCGGGAGTGGTTCCATCGCACTGTGAAGATTGACTCAGATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp TCTCAAAGTAGGCAGCTCGTAACCACACACTTTTCTTaGTGGGGAAGACTTGTAGGGCATAGGCATATATGG +
Preference number: 6 (lower is better)
Translates to: SQSRQLVTTHFS*WGRLVGHRHIW
Trigger: CCATATATGCCTATGCCCTACAAGTCTTCCCCAGCAAGAAAAGTGTGTGGTTACGAGCTGCCTACTTTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp CAAGCTCAACAGCTGCTTTCCACAATCGAACAGAGTTaGGAACATGCTCAAGTGCTTTCCGAAGAACACGCT +
Preference number: 6 (lower is better)
Translates to: QAQQLLSTIEQS*EHAQVLSEEHA
Trigger: AGCGTGTTCTTCGGAAAGCACTTGAGCATGTTCCAAACTCTGTTCGATTGTGGAAAGCAGCTGTTGAGCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp ACAGCTGCTTTCCACAATCGAACAGAGTTTGGAACATaGTCAAGTGCTTTCCGAAGAACACGCTTCTTTGCT +
Preference number: 6 (lower is better)
Translates to: TAAFHNRTEFGT*SSAFRRTRFFA
Trigger: AGCAAAGAAGCGTGTTCTTCGGAAAGCACTTGAGCATGTTCCAAACTCTGTTCGATTGTGGAAAGCAGCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp GATTCTAGCATCTTCAGGCTCTTCAAGCTCAACAGCTaGTTTCCACAATCGAACAGAGTTTGGAACATGCTC +
Preference number: 6 (lower is better)
Translates to: DSSIFRLFKLNS*FPQSNRVWNML
Trigger: GAGCATGTTCCAAACTCTGTTCGATTGTGGAAAGCAGCTGTTGAGCTTGAAGAGCCTGAAGATGCTAGAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CCA 72 bp AAGCTCAACAGCTGCTTTCCACAATCGAACAGAGTTTaGAACATGCTCAAGTGCTTTCCGAAGAACACGCTT +
Preference number: 6 (lower is better)
Translates to: KLNSCFPQSNRV*NMLKCFPKNTL
Trigger: AAGCGTGTTCTTCGGAAAGCACTTGAGCATGTTCCAAACTCTGTTCGATTGTGGAAAGCAGCTGTTGAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS TCA 72 bp GTATCATTCAGATCTTCATCATCATCATCAGCCGCCTaGTTTTTCTTCATCTGGTCCCCCACAGTTCTCTTC +
Preference number: 6 (lower is better)
Translates to: VSFRSSSSSSAA*FFFIWSPTVLF
Trigger: GAAGAGAACTGTGGGGGACCAGATGAAGAAAAATCAGGCGGCTGATGATGATGATGAAGATCTGAATGATAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS GCA 72 bp ACTTCTGCCAGCTTCCTCTTAAGGTCTGAAAATTGCTaGTGGATTTTGGGACGTTCCATTCGGTATTTCTCA +
Preference number: 6 (lower is better)
Translates to: TSASFLLRSENC*WILGRSIRYFS
Trigger: TGAGAAATACCGAATGGAACGTCCCAAAATCCAGCAGCAATTTTCAGACCTTAAGAGGAAGCTGGCAGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp TTAAGACCTTGCGAGCATTTTCATAAGTTTCTAGTCTaGCCAAAGCAAGCCATAGCTCTACACTGGTGGGAC +
Preference number: 6 (lower is better)
Translates to: LRPCEHFHKFLV*PKQAIALHWWD
Trigger: GTCCCACCAGTGTAGAGCTATGGCTTGCTTTGGCAAGACTAGAAACTTATGAAAATGCTCGCAAGGTCTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp ACTTCTGCCAGCTTCCTCTTAAGGTCTGAAAATTGCTGCTGGATTTaGGGACGTTCCATTCGGTATTTCTCAATCTCTTCTTTCTCCCTT +
Preference number: 6 (lower is better)
Translates to: TSASFLLRSENCCWI*GRSIRYFSISSFSL
Trigger: AAGGGAGAAAGAAGAGATTGAGAAATACCGAATGGAACGTCCCAAAATCCAGCAGCAATTTTCAGACCTTAAGAGGAAGCTGGCAGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 90 bp GTGCTTTATTTAAGACCTTGCGAGCATTTTCATAAGTTTCTAGTCTaGCCAAAGCAAGCCATAGCTCTACACTGGTGGGACAGCACTCTA +
Preference number: 6 (lower is better)
Translates to: VLYLRPCEHFHKFLV*PKQAIALHWWDSTL
Trigger: TAGAGTGCTGTCCCACCAGTGTAGAGCTATGGCTTGCTTTGGCAAGACTAGAAACTTATGAAAATGCTCGCAAGGTCTTAAATAAAGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8
CDS CAA 72 bp AGCTTCCTCTTAAGGTCTGAAAATTGCTGCTGGATTTaGGGACGTTCCATTCGGTATTTCTCAATCTCTTCT +
Preference number: 6 (lower is better)
Translates to: SFLLRSENCCWI*GRSIRYFSISS
Trigger: AGAAGAGATTGAGAAATACCGAATGGAACGTCCCAAAATCCAGCAGCAATTTTCAGACCTTAAGAGGAAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002529.7
ENSMUST00000136481.8