RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRPF40B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023007

Ensembl transcript IDs: ENSMUST00000023745.13, ENSMUST00000118287.9, ENSMUST00000126955.2, ENSMUST00000128352.8, ENSMUST00000134034.8, ENSMUST00000136980.8, ENSMUST00000140806.8, ENSMUST00000145482.8, ENSMUST00000150636.8

Found 509 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGGGCTGGGCAGCCTCCAGCACATCACAGTCTTCACTTCGACCTaGTTCAGGTTCCAGGAGGGCCATAGGCACTGGGATGGGACCCGG +
Preference number: 1 (lower is better)
Translates to: QGLGSLQHITVFTST*FRFQEGHRHWDGTR
Trigger: CCGGGTCCCATCCCAGTGCCTATGGCCCTCCTGGAACCTGAACCAGGTCGAAGTGAAGACTGTGATGTGCTGGAGGCTGCCCAGCCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR CCA 90 bp TGCCCTCGGCCACCCAGGCTGTGTCCAAGCAGCCTGTCTCTTTCCTaGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTG +
Preference number: 1 (lower is better)
Translates to: CPRPPRLCPSSLSLS*RPLLTLSTGITHPV
Trigger: CACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGCCTGGGTGGCCGAGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR CCA 90 bp GTCTTCACTTCGACCTGGTTCAGGTTCCAGGAGGGCCATAGGCACTaGGATGGGACCCGGAGGTATAGGTGGAGGGTCAGGCTGTGGCTG +
Preference number: 1 (lower is better)
Translates to: VFTSTWFRFQEGHRH*DGTRRYRWRVRLWL
Trigger: CAGCCACAGCCTGACCCTCCACCTATACCTCCGGGTCCCATCCCAGTGCCTATGGCCCTCCTGGAACCTGAACCAGGTCGAAGTGAAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR CCA 90 bp TGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGTCATTGGTaGTCGTCCAGCTGCTGTAGGAGTGTCCGCCTTCGCCTCTCCAGC +
Preference number: 1 (lower is better)
Translates to: CLTKSKAESSSWGHW*SSSCCRSVRLRLSS
Trigger: GCTGGAGAGGCGAAGGCGGACACTCCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
3UTR CCA 90 bp CACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGTCATTaGTGGTCGTCCAGCTGCTGTAGGAGTGTCCGCCTTCGCCTCTCC +
Preference number: 1 (lower is better)
Translates to: HCLTKSKAESSSWGH*WSSSCCRSVRLRLS
Trigger: GGAGAGGCGAAGGCGGACACTCCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
3UTR CCA 90 bp CCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTaGGGTCATTGGTGGTCGTCCAGCTGCTGTAGGAGTGTCCGCCTT +
Preference number: 1 (lower is better)
Translates to: PWSHCLTKSKAESSS*GHWWSSSCCRSVRL
Trigger: AAGGCGGACACTCCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
3UTR GCA 90 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTaGCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGTCATTGG +
Preference number: 1 (lower is better)
Translates to: RRRSLRQMLRRPWSH*LTKSKAESSSWGHW
Trigger: CCAATGACCCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
3UTR CCA 90 bp GACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTaGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGG +
Preference number: 1 (lower is better)
Translates to: DQTRRRSLRQMLRRP*SHCLTKSKAESSSW
Trigger: CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
3UTR CCA 90 bp TGCCTTCTCCCGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTaGCTTAGCTTCCTCCTCTTCCTGTGGCTGCCGATGCTGTCCAGT +
Preference number: 1 (lower is better)
Translates to: CLLPVAPTEARSLWF*LSFLLFLWLPMLSS
Trigger: ACTGGACAGCATCGGCAGCCACAGGAAGAGGAGGAAGCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR CCA 90 bp AAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTaGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGG +
Preference number: 1 (lower is better)
Translates to: KQPVSFLETPSHTIY*HHPPRGIDCPSLVW
Trigger: CCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR TCA 90 bp GGACTCCTGACTCTGGTTGTTGTAGTAGTAAGGCTTCCCTGTATCTaGCTTATACTCTTTCCAGGGACACTGGGACAGCAGCAGCTCTGC +
Preference number: 1 (lower is better)
Translates to: GLLTLVVVVVRLPCI*LILFPGTLGQQQLC
Trigger: GCAGAGCTGCTGCTGTCCCAGTGTCCCTGGAAAGAGTATAAGTCAGATACAGGGAAGCCTTACTACTACAACAACCAGAGTCAGGAGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR-3UTR CCA 90 bp TGCCTTCTCCCGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGCTTAGCCCCTGCTCCAGGGGCTaGGCAGCCTCCAGCACATCA +
Preference number: 2 (lower is better)
Translates to: CLLPVAPTEARSLWFWLSPCSRG*AASSTS
Trigger: TGATGTGCTGGAGGCTGCCCAGCCCCTGGAGCAGGG...GCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR-3UTR GCA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTGGTGGTCGTCCAGCTaGTGTAGGAGTGTCCGCCTT +
Preference number: 2 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKWWSSS*CRSVRL
Trigger: AAGGCGGACACTCCTACAGCAGCTGGACGACCACCA...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
3UTR-3UTR CCA 90 bp CAAGAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCAGCCTGTCTCTTTCCTaGAGACCCCTTCTCACACTA +
Preference number: 2 (lower is better)
Translates to: QEQALMLEGEDPALGHPGSLSLS*RPLLTL
Trigger: TAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCT...GCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR-3UTR CCA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTAGCCTGTCTCTTTCCTaGAGACCCCTTCTCACACTA +
Preference number: 2 (lower is better)
Translates to: EQALMLEGEDPALGHPGCSLSLS*RPLLTL
Trigger: TAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCT...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR-3UTR GCA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGGCTGAGGGCAAGGACTaGACTAGTCTGAGAACTAGG +
Preference number: 2 (lower is better)
Translates to: LLASPTPWYRLPISGLGLAEGKD*TSLRTR
Trigger: CCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGC...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR-3UTR TCA 90 bp CAGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGGAACTAGGGGACCCTTaGACACCAAAAGCAACCTTG +
Preference number: 2 (lower is better)
Translates to: QNTYIGSQGRGSSGGAPGELGDP*TPKATL
Trigger: CAAGGTTGCTTTTGGTGTTCAAGGGTCCCCTAGTTC...CCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR-3UTR CCA 90 bp AGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCAGCCTGTCTCTTTCCTaGAGACCCCTTCTCACACTA +
Preference number: 2 (lower is better)
Translates to: RTHTSGPRGEEVVVEPQGSLSLS*RPLLTL
Trigger: TAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCT...GCCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR-3UTR CCA 90 bp TGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCAGCTCGTGGGGTCATTaGTGGTCGTCCAGCTGCTGT +
Preference number: 2 (lower is better)
Translates to: CPSSLSLSWRPLLTLSTGSSWGH*WSSSCC
Trigger: ACAGCAGCTGGACGACCACCAATGACCCCACGAGCT...GCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126955.2
3UTR-3UTR TCA 90 bp ACCCAGGCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTGAACTAGGGGACCCTTaGACACCAAAAGCAACCTTG +
Preference number: 2 (lower is better)
Translates to: TQAVSKQPVSFLETPSHTELGDP*TPKATL
Trigger: CAAGGTTGCTTTTGGTGTTCAAGGGTCCCCTAGTTC...AGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGCCTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR-3UTR GCA 90 bp GCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCGCTGAGGGCAAGGACTaGACTAGTCTGAGAACTAGG +
Preference number: 2 (lower is better)
Translates to: ACLFPGDPFSHYLLASPTAEGKD*TSLRTR
Trigger: CCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGC...GGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR-3UTR GCA 90 bp TGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCGCTGAGGGCAAGGACTaGACTAGTCTGAGAACTAGG +
Preference number: 2 (lower is better)
Translates to: CPSSLSLSWRPLLTLSTGAEGKD*TSLRTR
Trigger: CCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGC...GCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR-3UTR CCA 90 bp GAAGGGACAGCCTTGTCCCTTAGCAGTTCTTTGAAAGCCTGTTTTGCCTTCTCCTCTTTCCAGGGACACTaGGACAGCAGCAGCTCTGCC +
Preference number: 2 (lower is better)
Translates to: EGTALSLSSSLKACFAFSSFQGH*DSSSSA
Trigger: GGCAGAGCTGCTGCTGTCCCAGTGTCCCTGGAAAGA...GGAGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGGACAAGGCTGTCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR CAA 90 bp TTGTCCCTTAGCAGTTCTTTGAAAGCCTGTTTTGCCTTCTCCCGGTaGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGCTTAGCTTCC +
Preference number: 2 (lower is better)
Translates to: LSLSSSLKACFAFSR*LQLRPDRSGSGLAS
Trigger: GGAAGCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGGACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR CAA 90 bp TCCCATGAAGCATTGGAAGGGACAGCCTTGTCCCTTAGCAGTTCTTaGAAAGCCTGTTTTGCCTTCTCCCGGTTGCTCCAACTGAGGCCA +
Preference number: 2 (lower is better)
Translates to: SHEALEGTALSLSSS*KACFAFSRLLQLRP
Trigger: TGGCCTCAGTTGGAGCAACCGGGAGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGGACAAGGCTGTCCCTTCCAATGCTTCATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR-3UTR GCA 90 bp TGGGCAGCCTCCAGCACATCACAGTCTTCACTTCGACCTGGTTCAGGTTCCAGGTGTAGTGTCTGTAGTTaGTGGGTCTGCTGTTTTCCT +
Preference number: 2 (lower is better)
Translates to: WAASSTSQSSLRPGSGSRCSVCS*WVCCFP
Trigger: AGGAAAACAGCAGACCCAGCAACTACAGACACTACA...CCTGGAACCTGAACCAGGTCGAAGTGAAGACTGTGATGTGCTGGAGGCTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR-3UTR CCA 90 bp GCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAATCGTGGGGTCATTGGTaGTCGTCCAGCTGCTGTAGG +
Preference number: 2 (lower is better)
Translates to: ATLRGANSSVLGVGYFRKSWGHW*SSSCCR
Trigger: CCTACAGCAGCTGGACGACCACCAATGACCCCACGA...TTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
3UTR-3UTR GCA 90 bp GAAGGGACAGCCTTGTCCCTTAGCAGTTCTTTGAAAGCCTGTTTTGCCTTCTCCGGACAGCAGCAGCTCTaGCTTAGACTTGAGTACGCT +
Preference number: 2 (lower is better)
Translates to: EGTALSLSSSLKACFAFSGQQQL*LRLEYA
Trigger: AGCGTACTCAAGTCTAAGGCAGAGCTGCTGCTGTCC...GGAGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGGACAAGGCTGTCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR-3UTR CCA 90 bp GTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCAGTAGTGTGTTGGGGGTaGGTTACTTTAGGAAAAGTG +
Preference number: 2 (lower is better)
Translates to: VQAACLFPGDPFSHYLLAVVCWG*VTLGKV
Trigger: CACTTTTCCTAAAGTAACCCACCCCCAACACACTAC...TGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR GCA 72 bp TGCTGTCCAGTAGAGCTGCTGGGGCCCTCCTCCCGCTaGAGGAAGCCCTGCTCCAGGGGCTGGGCAGCCTCC +
Preference number: 3 (lower is better)
Translates to: CCPVELLGPSSR*RKPCSRGWAAS
Trigger: GGAGGCTGCCCAGCCCCTGGAGCAGGGCTTCCTGCAGCGGGAGGAGGGCCCCAGCAGCTCTACTGGACAGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR CCA 72 bp TCGACCTGGTTCAGGTTCCAGGAGGGCCATAGGCACTaGGATGGGACCCGGAGGTATAGGTGGAGGGTCAGG +
Preference number: 3 (lower is better)
Translates to: STWFRFQEGHRH*DGTRRYRWRVR
Trigger: CCTGACCCTCCACCTATACCTCCGGGTCCCATCCCAGTGCCTATGGCCCTCCTGGAACCTGAACCAGGTCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR GCA 72 bp GAAAGTAGCTCGTGGGGTCATTGGTGGTCGTCCAGCTaGTGTAGGAGTGTCCGCCTTCGCCTCTCCAGCTCC +
Preference number: 3 (lower is better)
Translates to: ESSSWGHWWSSS*CRSVRLRLSSS
Trigger: GGAGCTGGAGAGGCGAAGGCGGACACTCCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTACTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
3UTR TCA 72 bp GGACCCGGAGGTATAGGTGGAGGGTCAGGCTGTGGCTaGGGTGGTTGTGGCTGTAGTGTCTGTAGTTGCTGG +
Preference number: 3 (lower is better)
Translates to: GPGGIGGGSGCG*GGCGCSVCSCW
Trigger: CCAGCAACTACAGACACTACAGCCACAACCACCTCAGCCACAGCCTGACCCTCCACCTATACCTCCGGGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR GCA 72 bp AGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTaGCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGG +
Preference number: 3 (lower is better)
Translates to: SLRQMLRRPWSH*LTKSKAESSSW
Trigger: CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
3UTR-3UTR CAA 90 bp GCCTTCTCCCGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGCTTAGCTAGCTCTGCCTTAGACTaGAGTACGCTGGGCTTCTCC +
Preference number: 3 (lower is better)
Translates to: AFSRLLQLRPDRSGSGLASSALD*STLGFS
Trigger: GGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAGCT...AGCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR CCA 72 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTaGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGT +
Preference number: 3 (lower is better)
Translates to: RRRSLRQMLRRP*SHCLTKSKAES
Trigger: ACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
3UTR CCA 72 bp CCCTTCTCACACTATCTACTGGCATCACCCACCCCGTaGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGG +
Preference number: 3 (lower is better)
Translates to: PFSHYLLASPTP*YRLPISGLGLR
Trigger: CCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR CCA 72 bp AAGTCCAAGGCAGAAAGTAGCTCGTGGGGTCATTGGTaGTCGTCCAGCTGCTGTAGGAGTGTCCGCCTTCGC +
Preference number: 3 (lower is better)
Translates to: KSKAESSSWGHW*SSSCCRSVRLR
Trigger: GCGAAGGCGGACACTCCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTACTTTCTGCCTTGGACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
3UTR CCA 72 bp ACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGTCATTaGTGGTCGTCCAGCTGCTGTAGGAGTGTCCGCCTT +
Preference number: 3 (lower is better)
Translates to: TKSKAESSSWGH*WSSSCCRSVRL
Trigger: AAGGCGGACACTCCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTACTTTCTGCCTTGGACTTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
3UTR CCA 72 bp GTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTaGCATCACCCACCCCGTGGTATAGACTGCCCATCT +
Preference number: 3 (lower is better)
Translates to: VSFLETPSHTIY*HHPPRGIDCPS
Trigger: AGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR GCA 72 bp GGTGGTTGTGGCTGTAGTGTCTGTAGTTGCTGGGTCTaGTGTTTTCCTGCAGACTCTTGTTTGACGAGGGCT +
Preference number: 3 (lower is better)
Translates to: GGCGCSVCSCWV*CFPADSCLTRA
Trigger: AGCCCTCGTCAAACAAGAGTCTGCAGGAAAACAGCAGACCCAGCAACTACAGACACTACAGCCACAACCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR-3UTR CAA 90 bp GGTCCTTGGGCCGAGTCCACCGGGACTCCTGACTCTGGTTGTTGTAGTAGTAAGCTTCTCCCACACGGATaGCTTATCATCAGCATTGTA +
Preference number: 3 (lower is better)
Translates to: GPWAESTGTPDSGCCSSKLLPHG*LIISIV
Trigger: TACAATGCTGATGATAAGCAATCCGTGTGGGAGAAG...CTTACTACTACAACAACCAGAGTCAGGAGTCCCGGTGGACTCGGCCCAAGGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp CCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTTCCGCCTCCTCCGCTTaGGGGGCCGGAGGGATGGTG +
Preference number: 4 (lower is better)
Translates to: PTPWYRLPISGLGLRARTSASSA*GAGGMV
Trigger: CACCATCCCTCCGGCCCCCCAAGCGGAGGAGGCGGA...AGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAGGGCCCTCCTCCCGCTaGAGGAAGCCCTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: RQMLRRPWSHCLTKSKAEGPSSR*RKPCSR
Trigger: CCTGGAGCAGGGCTTCCTGCAGCGGGAGGAGGGCCC...TTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTGGGCCCTCCTCCCGCTaGAGGAAGCCCTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: DKTKESEADAEATLEPLPGPSSR*RKPCSR
Trigger: CCTGGAGCAGGGCTTCCTGCAGCGGGAGGAGGGCCC...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCTCCGCCTCCTCCGCTTaGGGGGCCGGAGGGATGGTG +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLSASSA*GAGGMV
Trigger: CACCATCCCTCCGGCCCCCCAAGCGGAGGAGGCGGA...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCAGCCACAGCAGAGCTaGCGGTGTCCGCACCCGGAG +
Preference number: 4 (lower is better)
Translates to: DKTKESEADAEATLEPLPQPQQS*RCPHPE
Trigger: CTCCGGGTGCGGACACCGCCAGCTCTGCTGTGGCTG...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTGTCACCCGGAGGTATAGGTaGAGGGTCAGGCTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: QALMLEGEDPALGHPGCVTRRYR*RVRLWL
Trigger: CAGCCACAGCCTGACCCTCCACCTATACCTCCGGGT...GACACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCCCCTGCTCCAGGGGCTaGGCAGCCTCCAGCACATCA +
Preference number: 4 (lower is better)
Translates to: RSLRQMLRRPWSHCLTKSPCSRG*AASSTS
Trigger: TGATGTGCTGGAGGCTGCCCAGCCCCTGGAGCAGGG...GGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGGGGCCGGAGGGATGGTaGGGGCAGCTCCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: SPTPWYRLPISGLGLRARGPEGW*GQLLFI
Trigger: GATGAAGAGGAGCTGCCCCCACCATCCCTCCGGCCC...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CAAGAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGCAGCTGCTGGTCCTaGGCAAAGCTGGGGTTATCC +
Preference number: 4 (lower is better)
Translates to: QEQALMLEGEDPALGHPGCSCWS*AKLGLS
Trigger: GGATAACCCCAGCTTTGCTCAGGACCAGCAGCTGCA...GCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTCTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CAAGAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTTCCGACGCCGGAGCTaGTTGGCTTGTTCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: QEQALMLEGEDPALGHPGFRRRS*LACSFS
Trigger: GGAGAAGGAACAAGCCAAGCAGCTCCGGCGTCGGAA...GCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTCTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTAGCTGCCCTGTCTCATaGAGCTCGTCCAGGAAGCTC +
Preference number: 4 (lower is better)
Translates to: EQALMLEGEDPALGHPGCSCPVS*SSSRKL
Trigger: GAGCTTCCTGGACGAGCTGCATGAGACAGGGCAGCT...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTAGAGCAGGCACGGCCTaGCTCAGCATGCTTCGAAAG +
Preference number: 4 (lower is better)
Translates to: EQALMLEGEDPALGHPGCRAGTA*LSMLRK
Trigger: CTTTCGAAGCATGCTGAGGCAGGCCGTGCCTGCTCT...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAACGGTTAGGGAGCTCTaGCTGCCGGGGTTCCCTGTC +
Preference number: 4 (lower is better)
Translates to: LRQMLRRPWSHCLTKSKATVREL*LPGFPV
Trigger: GACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGT...TGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp AGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCACGGTTAGGGAGCTCTaGCTGCCGGGGTTCCCTGTC +
Preference number: 4 (lower is better)
Translates to: RSLRQMLRRPWSHCLTKSTVREL*LPGFPV
Trigger: GACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGT...GGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp CAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTGTCATGCTCTTCAGGGCCTaGATATTCCGACGCCGGAGC +
Preference number: 4 (lower is better)
Translates to: QALMLEGEDPALGHPGCVMLFRA*IFRRRS
Trigger: GCTCCGGCGTCGGAATATCCAGGCCCTGAAGAGCAT...GACACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTGCTGGCCCAGCATGTTaGCAAAGCGAACGTCAGTGC +
Preference number: 4 (lower is better)
Translates to: EQALMLEGEDPALGHPGCAGPAC*QSERQC
Trigger: GCACTGACGTTCGCTTTGCCAACATGCTGGGCCAGC...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTGTCTGTAGCGGGGGTCAGTaGCTACCATCTTCATGGCCT +
Preference number: 4 (lower is better)
Translates to: QALMLEGEDPALGHPGCVCSGGQ*LPSSWP
Trigger: AGGCCATGAAGATGGTAGTCACTGACCCCCGCTACA...GACACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CAAGAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCACTCAGCTCGCTTTCTaGCGTGTCCCAGCCTGTCTT +
Preference number: 4 (lower is better)
Translates to: QEQALMLEGEDPALGHPGTQLAF*RVPACL
Trigger: AAGACAGGCTGGGACACGTCAGAAAGCGAGCTGAGT...GCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTCTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTTGTAAGTGGTGGCGGTaGCCCCATTGGTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: EQALMLEGEDPALGHPGCCKWWR*PHWWKH
Trigger: ATGCTTCCACCAATGGGGGCACCGCCACCACTTACA...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTAGGGCCCTCCTCCCGCTaGAGGAAGCCCTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVGPSSR*RKPCSR
Trigger: CCTGGAGCAGGGCTTCCTGCAGCGGGAGGAGGGCCC...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTTGTTCCAGGAAATGCTaGAGGGTCTGCTTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: EQALMLEGEDPALGHPGCCSRKC*RVCLAS
Trigger: GGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACA...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTGTCGGGTGGTGGAGGTCATaGGTTCATGCTGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: QALMLEGEDPALGHPGCVGWWRS*VHAVPG
Trigger: TCCTGGAACAGCATGAACGCATGACCTCCACCACCC...GACACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCGAAAGGCAGCTTCTCTaGGCCGCATCCTTCGGGCCT +
Preference number: 4 (lower is better)
Translates to: RSLRQMLRRPWSHCLTKSERQLL*AASFGP
Trigger: AGGCCCGAAGGATGCGGCGCAGAGAAGCTGCCTTTC...GGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTTAGGGAGCTCTGCCTaGCGGGGTTCCCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKLGSSA*RGSLSC
Trigger: ACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAA...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGACGGTTAGGGAGCTCTaGCTGCCGGGGTTCCCTGTC +
Preference number: 4 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWTVREL*LPGFPV
Trigger: GACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGT...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp TGCCTTCTCCCGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGCTTAGCCAGCCACAGCAGCGCTaGAGTGACAGGCACCGCTGG +
Preference number: 4 (lower is better)
Translates to: CLLPVAPTEARSLWFWLSQPQQR*SDRHRW
Trigger: CCAGCGGTGCCTGTCACTGCAGCGCTGCTGTGGCTG...GCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp GGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGTATGCCAGGTGGCATaGGGGGAATGGCTGGTGGTC +
Preference number: 4 (lower is better)
Translates to: GDPGATASRSPRQKVARGVCQVA*GEWLVV
Trigger: GACCACCAGCCATTCCCCCCATGCCACCTGGCATAC...CCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCTGGCGGTGCCCCCATTaGTGGAAGCATTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: QTRRRSLRQMLRRPWSHCWRCPH*WKHWGQ
Trigger: CTGCCCCCAATGCTTCCACCAATGGGGGCACCGCCA...GCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CAGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGTGGCGGTGCCCCCATTaGTGGAAGCATTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: QNTYIGSQGRGSSGGAPGWRCPH*WKHWGQ
Trigger: CTGCCCCCAATGCTTCCACCAATGGGGGCACCGCCA...CCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTTATCTGTGTAAGTGGTaGCGGTGCCCCCATTGGTGG +
Preference number: 4 (lower is better)
Translates to: EQALMLEGEDPALGHPGCYLCKW*RCPHWW
Trigger: CCACCAATGGGGGCACCGCCACCACTTACACAGATA...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTTGGTATCTGTGTAAGTaGTGGCGGTGCCCCCATTGG +
Preference number: 4 (lower is better)
Translates to: EQALMLEGEDPALGHPGCWYLCK*WRCPHW
Trigger: CCAATGGGGGCACCGCCACCACTTACACAGATACCA...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCCCTGCTCCAGGGGCTaGGCAGCCTCCAGCACATCA +
Preference number: 4 (lower is better)
Translates to: TDQTRRRSLRQMLRRPWSPCSRG*AASSTS
Trigger: TGATGTGCTGGAGGCTGCCCAGCCCCTGGAGCAGGG...GCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCCCCTGCTCCAGGGGCTaGGCAGCCTCCAGCACATCA +
Preference number: 4 (lower is better)
Translates to: MLRRPWSHCLTKSKAESSPCSRG*AASSTS
Trigger: TGATGTGCTGGAGGCTGCCCAGCCCCTGGAGCAGGG...GCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCTCTGCTTGGCCTCCTTaGCTCTCAGCCGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLSAWPP*LSAGPP
Trigger: AGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGA...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGCCGGTAGCGGGTGGTaGAGGTCATGCGTTCATGCT +
Preference number: 4 (lower is better)
Translates to: LRQMLRRPWSHCLTKSKAAGSGW*RSCVHA
Trigger: AGCATGAACGCATGACCTCCACCACCCGCTACCGGC...TGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGCCGGTAGCGGGTGGTaGAGGTCATGCGTTCATGCT +
Preference number: 4 (lower is better)
Translates to: GDPGATASRSPRQKVARGAGSGW*RSCVHA
Trigger: AGCATGAACGCATGACCTCCACCACCCGCTACCGGC...CCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACCCCGCCGGTAGCGGGTaGTGGAGGTCATGCGTTCAT +
Preference number: 4 (lower is better)
Translates to: DQTRRRSLRQMLRRPWSHPAGSG*WRSCVH
Trigger: ATGAACGCATGACCTCCACCACCCGCTACCGGCGGG...GTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGCCCGCCGGTAGCGGGTaGTGGAGGTCATGCGTTCAT +
Preference number: 4 (lower is better)
Translates to: LLASPTPWYRLPISGLGLPAGSG*WRSCVH
Trigger: ATGAACGCATGACCTCCACCACCCGCTACCGGCGGG...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAACCCGCCGGTAGCGGGTaGTGGAGGTCATGCGTTCAT +
Preference number: 4 (lower is better)
Translates to: RQMLRRPWSHCLTKSKAEPAGSG*WRSCVH
Trigger: ATGAACGCATGACCTCCACCACCCGCTACCGGCGGG...TTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGGGAGTAGAGCCCGGCTaGCCCAGCATGTTGGCAAAG +
Preference number: 4 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKGVEPG*PSMLAK
Trigger: CTTTGCCAACATGCTGGGCCAGCCGGGCTCTACTCC...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCGGGCCGGAGGGATGGTaGGGGCAGCTCCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: MLRRPWSHCLTKSKAESSGPEGW*GQLLFI
Trigger: GATGAAGAGGAGCTGCCCCCACCATCCCTCCGGCCC...GCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTTGGGGCCGGAGGGATGGTaGGGGCAGCTCCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: WSGAEGKDCTSLRTRGPLGPEGW*GQLLFI
Trigger: GATGAAGAGGAGCTGCCCCCACCATCCCTCCGGCCC...CAAGGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGGAAGATGGGGAGCCTaGTCCTCCAAGAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: GDPGATASRSPRQKVARGGRWGA*SSKSST
Trigger: GGTGCTGCTCTTGGAGGACCAGGCTCCCCATCTTCC...CCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGGTCAGGCTGTGGCTaGGGTGGTTGTGGCTGTAGT +
Preference number: 4 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWGSGCG*GGCGCS
Trigger: ACTACAGCCACAACCACCTCAGCCACAGCCTGACCC...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGGCTCCGACTCCAGGGTaGTCTGCTCAAAGGCTGAGT +
Preference number: 4 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKAPTPG*SAQRLS
Trigger: ACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGC...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGGCTCCGACTCCAGGGTaGTCTGCTCAAAGGCTGAGT +
Preference number: 4 (lower is better)
Translates to: SPTPWYRLPISGLGLRARAPTPG*SAQRLS
Trigger: ACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGC...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp AGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCCAGGTGGACATGGAGTaGAGCTGCCCTGTCTCATGC +
Preference number: 4 (lower is better)
Translates to: RSLRQMLRRPWSHCLTKSQVDME*SCPVSC
Trigger: GCATGAGACAGGGCAGCTGCACTCCATGTCCACCTG...GGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCAGCTTGATGTTGCCTaGGTCCAGCGCAGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: QTRRRSLRQMLRRPWSHCQLDVA*VQRSSP
Trigger: AGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTG...GCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCAGCTTGATGTTGCCTaGGTCCAGCGCAGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: DKTKESEADAEATLEPLPQLDVA*VQRSSP
Trigger: AGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTG...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCCAGCTTGATGTTGCCTaGGTCCAGCGCAGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: RTHTSGPRGEEVVVEPQGQLDVA*VQRSSP
Trigger: AGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTG...GCCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGCCGTTCCCTCTCCCGTaGCTCTGCTTTTTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKPFPLP*LCFFQQ
Trigger: CTGCTGGAAAAAGCAGAGGCACGGGAGAGGGAACGG...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGAGAGCAGGCACGGCCTaGCTCAGCATGCTTCGAAAG +
Preference number: 4 (lower is better)
Translates to: SPTPWYRLPISGLGLRARRAGTA*LSMLRK
Trigger: CTTTCGAAGCATGCTGAGGCAGGCCGTGCCTGCTCT...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTTTAGGGAGCTCTGCCTaGCGGGGTTCCCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: DKTKESEADAEATLEPLPLGSSA*RGSLSC
Trigger: ACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAA...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp CCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAACGGTTAGGGAGCTCTaGCTGCCGGGGTTCCCTGTC +
Preference number: 4 (lower is better)
Translates to: PWYRLPISGLGLRARTALTVREL*LPGFPV
Trigger: GACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGT...TAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp GACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGACGGTTAGGGAGCTCTaGCTGCCGGGGTTCCCTGTC +
Preference number: 4 (lower is better)
Translates to: DTDQTRRRSLRQMLRRPWTVREL*LPGFPV
Trigger: GACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGT...CCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGCGGTGCCCCCATTGGTaGAAGCATTGGGGGCAGTAT +
Preference number: 4 (lower is better)
Translates to: SPTPWYRLPISGLGLRARRCPHW*KHWGQY
Trigger: ATACTGCCCCCAATGCTTCCACCAATGGGGGCACCG...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TGCCTTCTCCCGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGCTTAGCTGGCGGTGCCCCCATTaGTGGAAGCATTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: CLLPVAPTEARSLWFWLSWRCPH*WKHWGQ
Trigger: CTGCCCCCAATGCTTCCACCAATGGGGGCACCGCCA...GCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp CTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCCAGCCACAGCAGAGCTaGCGGTGTCCGCACCCGGAG +
Preference number: 4 (lower is better)
Translates to: LSLSWRPLLTLSTGITHPQPQQS*RCPHPE
Trigger: CTCCGGGTGCGGACACCGCCAGCTCTGCTGTGGCTG...GGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCAGCCACAGCAGAGCTaGCGGTGTCCGCACCCGGAG +
Preference number: 4 (lower is better)
Translates to: ACLFPGDPFSHYLLASPTQPQQS*RCPHPE
Trigger: CTCCGGGTGCGGACACCGCCAGCTCTGCTGTGGCTG...GGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGTCTTTCCAGGGACACTaGGACAGCAGCAGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: RRRSLRQMLRRPWSHCLTSFQGH*DSSSSA
Trigger: GGCAGAGCTGCTGCTGTCCCAGTGTCCCTGGAAAGA...CGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGACCCGGAGGTATAGGTaGAGGGTCAGGCTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: LLASPTPWYRLPISGLGLTRRYR*RVRLWL
Trigger: CAGCCACAGCCTGACCCTCCACCTATACCTCCGGGT...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGGCCGGTAGCGGGTGGTaGAGGTCATGCGTTCATGCT +
Preference number: 4 (lower is better)
Translates to: PDKTKESEADAEATLEPLAGSGW*RSCVHA
Trigger: AGCATGAACGCATGACCTCCACCACCCGCTACCGGC...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGATGCTCTTCAGGGCCTaGATATTCCGACGCCGGAGC +
Preference number: 4 (lower is better)
Translates to: GDPGATASRSPRQKVARGMLFRA*IFRRRS
Trigger: GCTCCGGCGTCGGAATATCCAGGCCCTGAAGAGCAT...CCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCACCATCCAGGTGGACATaGAGTGCAGCTGCCCTGTCT +
Preference number: 4 (lower is better)
Translates to: ASPTPWYRLPISGLGLRAPSRWT*SAAALS
Trigger: AGACAGGGCAGCTGCACTCCATGTCCACCTGGATGG...TGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGACAGCTCCATCCAGGTaGACATGGAGTGCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: RRRSLRQMLRRPWSHCLTTAPSR*TWSAAA
Trigger: GGCAGCTGCACTCCATGTCCACCTGGATGGAGCTGT...CGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TGGTGGTCGTCCAGCTGCTGTAGGAGTGTCCGCCTTCGCCTCTCCAGCTCCCCCTTTCGGCCTTTGGTGTaGAGGTGCTGGCATTCAGTC +
Preference number: 4 (lower is better)
Translates to: WWSSSCCRSVRLRLSSSPFRPLV*RCWHSV
Trigger: GACTGAATGCCAGCACCTCCACACCAAAGGCCGAAA...GGGGGAGCTGGAGAGGCGAAGGCGGACACTCCTACAGCAGCTGGACGACCACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp AGGCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTTCCGCCTCCTCCGCTTaGGGGGCCGGAGGGATGGTG +
Preference number: 4 (lower is better)
Translates to: RLCPSSLSLSWRPLLTLSSASSA*GAGGMV
Trigger: CACCATCCCTCCGGCCCCCCAAGCGGAGGAGGCGGA...AGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCTCCGCCTCCTCCGCTTaGGGGGCCGGAGGGATGGTG +
Preference number: 4 (lower is better)
Translates to: CPSSLSLSWRPLLTLSTGSASSA*GAGGMV
Trigger: CACCATCCCTCCGGCCCCCCAAGCGGAGGAGGCGGA...GCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGGGAAGATGGGGAGCCTaGTCCTCCAAGAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: LRRPWSHCLTKSKAESSSGRWGA*SSKSST
Trigger: GGTGCTGCTCTTGGAGGACCAGGCTCCCCATCTTCC...CGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp TGGTGGTCGTCCAGCTGCTGTAGGAGTGTCCGCCTTCGCCTCTCCAGCTCCCCCTTGGTGTGGAGGTGCTaGCATTCAGTCTGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: WWSSSCCRSVRLRLSSSPLVWRC*HSVCSN
Trigger: GTTGGAGCAGACTGAATGCCAGCACCTCCACACCAA...GGGGGAGCTGGAGAGGCGAAGGCGGACACTCCTACAGCAGCTGGACGACCACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp GGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTTGAACACCGGGTCAGGCTGTGGCTaGGGTGGTTGTGGCTGTAGT +
Preference number: 4 (lower is better)
Translates to: GAEGKDCTSLRTRGPLNTGSGCG*GGCGCS
Trigger: ACTACAGCCACAACCACCTCAGCCACAGCCTGACCC...GGTGTTCAAGGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp GCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCACATGGCCTGTTCCCATaGAGCATTGGAAGGGACAGC +
Preference number: 4 (lower is better)
Translates to: ASPTPWYRLPISGLGLRAHGLFP*SIGRDS
Trigger: GCTGTCCCTTCCAATGCTTCATGGGAACAGGCCATG...TGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp GCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAGATCTGCTCAAAGGCTaGGTCGCACACAAAGCGCTC +
Preference number: 4 (lower is better)
Translates to: ASPTPWYRLPISGLGLRADLLKG*VAHKAL
Trigger: GAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATC...TGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp CTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCATGTAAGTGGTGGCGGTaGCCCCATTGGTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: LRQMLRRPWSHCLTKSKACKWWR*PHWWKH
Trigger: ATGCTTCCACCAATGGGGGCACCGCCACCACTTACA...TGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGTCCTGTGGCTGCCGATaGTGTCCAGTAGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: PDKTKESEADAEATLEPLSCGCR*CPVELL
Trigger: CAGCAGCTCTACTGGACAGCATCGGCAGCCACAGGA...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTCCTGTGGCTGCCGATaGTGTCCAGTAGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: LWSGAEGKDCTSLRTRGPSCGCR*CPVELL
Trigger: CAGCAGCTCTACTGGACAGCATCGGCAGCCACAGGA...GGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCTCCTGTGGCTGCCGATaGTGTCCAGTAGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: RTHTSGPRGEEVVVEPQGSCGCR*CPVELL
Trigger: CAGCAGCTCTACTGGACAGCATCGGCAGCCACAGGA...GCCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCTTCCGACGCCGGAGCTaGTTGGCTTGTTCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: RTHTSGPRGEEVVVEPQGFRRRS*LACSFS
Trigger: GGAGAAGGAACAAGCCAAGCAGCTCCGGCGTCGGAA...GCCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTAGCTGCCCTGTCTCATaGAGCTCGTCCAGGAAGCTC +
Preference number: 4 (lower is better)
Translates to: DKTKESEADAEATLEPLPSCPVS*SSSRKL
Trigger: GAGCTTCCTGGACGAGCTGCATGAGACAGGGCAGCT...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCGACATGGAGTGCAGCTaGCCTGTCTCATGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: LWSGAEGKDCTSLRTRGPDMECS*PVSCSS
Trigger: CGAGCTGCATGAGACAGGGCAGCTGCACTCCATGTC...GGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCAGGTGGACATGGAGTaGAGCTGCCCTGTCTCATGC +
Preference number: 4 (lower is better)
Translates to: DKTKESEADAEATLEPLPQVDME*SCPVSC
Trigger: GCATGAGACAGGGCAGCTGCACTCCATGTCCACCTG...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTAACGTCAGTGCTGACTaGCGGGTACAGCTCCATCCA +
Preference number: 4 (lower is better)
Translates to: PTPWYRLPISGLGLRARTNVSAD*RVQLHP
Trigger: TGGATGGAGCTGTACCCGGCAGTCAGCACTGACGTT...AGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAACGTCAGTGCTGACTaGCGGGTACAGCTCCATCCA +
Preference number: 4 (lower is better)
Translates to: ASPTPWYRLPISGLGLRANVSAD*RVQLHP
Trigger: TGGATGGAGCTGTACCCGGCAGTCAGCACTGACGTT...TGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGCCGTTCCCTCTCCCGTaGCTCTGCTTTTTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWPFPLP*LCFFQQ
Trigger: CTGCTGGAAAAAGCAGAGGCACGGGAGAGGGAACGG...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGAGAGCAGGCACGGCCTaGCTCAGCATGCTTCGAAAG +
Preference number: 4 (lower is better)
Translates to: PDKTKESEADAEATLEPLRAGTA*LSMLRK
Trigger: CTTTCGAAGCATGCTGAGGCAGGCCGTGCCTGCTCT...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGGACTCCAGGGTGATCTaGTCAAAGGCTGAGTCGCAC +
Preference number: 4 (lower is better)
Translates to: SPTPWYRLPISGLGLRARDSRVI*SKAESH
Trigger: GTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTC...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp CAAGAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCGTTTCTTGCCCTTTCTaGCATGCTTTCGGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: QEQALMLEGEDPALGHPGVSCPF*HAFGLW
Trigger: CCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAAC...GCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp TCCAAGGCAGAAAGTAGCTCGTGGGGTCATTGGTGGTCGTCCAGCTGCTGTAGGACGGTTAGGGAGCTCTaGCTGCCGGGGTTCCCTGTC +
Preference number: 4 (lower is better)
Translates to: SKAESSSWGHWWSSSCCRTVREL*LPGFPV
Trigger: GACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGT...CCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTACTTTCTGCCTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp CTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCACCTTTGGTGTGGAGGTaGTGGCATTCAGTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: LRQMLRRPWSHCLTKSKAPLVWR*WHSVCS
Trigger: GGAGCAGACTGAATGCCAGCACCTCCACACCAAAGG...TGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCTGGTGGTCGTCCAGCTaGTGTAGGAGTGTCCGCCTT +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLWWSSS*CRSVRL
Trigger: AAGGCGGACACTCCTACAGCAGCTGGACGACCACCA...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCGTATGCCAGGTGGCATaGGGGGAATGGCTGGTGGTC +
Preference number: 4 (lower is better)
Translates to: TDQTRRRSLRQMLRRPWSVCQVA*GEWLVV
Trigger: GACCACCAGCCATTCCCCCCATGCCACCTGGCATAC...GCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCGGTGCCCCCATTGGTaGAAGCATTGGGGGCAGTAT +
Preference number: 4 (lower is better)
Translates to: PDKTKESEADAEATLEPLRCPHW*KHWGQY
Trigger: ATACTGCCCCCAATGCTTCCACCAATGGGGGCACCG...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAAGTGACAGGCACCGCTaGCATCAGCATCCCCGGCAT +
Preference number: 4 (lower is better)
Translates to: PWYRLPISGLGLRARTALSDRHR*HQHPRH
Trigger: ATGCCGGGGATGCTGATGCCAGCGGTGCCTGTCACT...TAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGGTCTTCACTTCGACCTaGTTCAGGTTCCAGGAGGGC +
Preference number: 4 (lower is better)
Translates to: SPTPWYRLPISGLGLRARVFTST*FRFQEG
Trigger: GCCCTCCTGGAACCTGAACCAGGTCGAAGTGAAGAC...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGTTCCTCCTCTTCCTGTaGCTGCCGATGCTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: GDPGATASRSPRQKVARGFLLFL*LPMLSS
Trigger: ACTGGACAGCATCGGCAGCCACAGGAAGAGGAGGAA...CCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGATGCTCTTCAGGGCCTaGATATTCCGACGCCGGAGC +
Preference number: 4 (lower is better)
Translates to: LLASPTPWYRLPISGLGLMLFRA*IFRRRS
Trigger: GCTCCGGCGTCGGAATATCCAGGCCCTGAAGAGCAT...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGCCATCCAGGTGGACATaGAGTGCAGCTGCCCTGTCT +
Preference number: 4 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWPSRWT*SAAALS
Trigger: AGACAGGGCAGCTGCACTCCATGTCCACCTGGATGG...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACCCATCCAGGTGGACATaGAGTGCAGCTGCCCTGTCT +
Preference number: 4 (lower is better)
Translates to: DQTRRRSLRQMLRRPWSHPSRWT*SAAALS
Trigger: AGACAGGGCAGCTGCACTCCATGTCCACCTGGATGG...GTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTAAGAAGGTGGGAAGATaGGGAGCCTGGTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: PTPWYRLPISGLGLRARTKKVGR*GAWSSK
Trigger: CTTGGAGGACCAGGCTCCCCATCTTCCCACCTTCTT...AGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGCTTGATTCCGAAGCCTaGGGAACGGTTAGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: RRRSLRQMLRRPWSHCLTLDSEA*GTVREL
Trigger: GAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAG...CGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp TGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCGAGCCGTCGCTGCAGTaGCAGGCACCGCTGGCATCA +
Preference number: 4 (lower is better)
Translates to: CPSSLSLSWRPLLTLSTGEPSLQ*QAPLAS
Trigger: TGATGCCAGCGGTGCCTGTCACTGCAGCGACGGCTC...GCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp AAAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGGAGCCGTCGCTGCAGTaGCAGGCACCGCTGGCATCA +
Preference number: 4 (lower is better)
Translates to: KSGHRPDKTKESEADAEAEPSLQ*QAPLAS
Trigger: TGATGCCAGCGGTGCCTGTCACTGCAGCGACGGCTC...CGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp AGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAACATGGCCTGTTCCCATaGAGCATTGGAAGGGACAGC +
Preference number: 4 (lower is better)
Translates to: RQMLRRPWSHCLTKSKAEHGLFP*SIGRDS
Trigger: GCTGTCCCTTCCAATGCTTCATGGGAACAGGCCATG...TTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCTGTAGCGGGGGTCAGTaGCTACCATCTTCATGGCCT +
Preference number: 4 (lower is better)
Translates to: QTRRRSLRQMLRRPWSHCCSGGQ*LPSSWP
Trigger: AGGCCATGAAGATGGTAGTCACTGACCCCCGCTACA...GCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTGTAGCGGGGGTCAGTaGCTACCATCTTCATGGCCT +
Preference number: 4 (lower is better)
Translates to: LWSGAEGKDCTSLRTRGPCSGGQ*LPSSWP
Trigger: AGGCCATGAAGATGGTAGTCACTGACCCCCGCTACA...GGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CAAGAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCAAGTGGTTTGGAAGTTaGCACTGCTCATCCCATCCA +
Preference number: 4 (lower is better)
Translates to: QEQALMLEGEDPALGHPGKWFGS*HCSSHP
Trigger: TGGATGGGATGAGCAGTGTCAACTTCCAAACCACTT...GCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCTCGTCCAGGAAGCTCTaGAAGGCCTCCCGATTCTTC +
Preference number: 4 (lower is better)
Translates to: QTRRRSLRQMLRRPWSHCSSRKL*KASRFF
Trigger: GAAGAATCGGGAGGCCTTTCAGAGCTTCCTGGACGA...GCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCGATCTGCTCAAAGGCTaGGTCGCACACAAAGCGCTC +
Preference number: 4 (lower is better)
Translates to: QTRRRSLRQMLRRPWSHCDLLKG*VAHKAL
Trigger: GAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATC...GCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp CTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCGATCTGCTCAAAGGCTaGGTCGCACACAAAGCGCTC +
Preference number: 4 (lower is better)
Translates to: LWSGAEGKDCTSLRTRGPDLLKG*VAHKAL
Trigger: GAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATC...GGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp TGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTTGGCTCCGACTCCAGGGTaGTCTGCTCAAAGGCTGAGT +
Preference number: 4 (lower is better)
Translates to: WSGAEGKDCTSLRTRGPLAPTPG*SAQRLS
Trigger: ACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGC...CAAGGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp CCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTCCGAAGACCATGATCTaGCCCAAGAAGAAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: PTPWYRLPISGLGLRARTPKTMI*PKKKVG
Trigger: TCCCACCTTCTTCTTGGGTCAGATCATGGTCTTCGG...AGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACTCAGCTCGCTTTCTaGCGTGTCCCAGCCTGTCTT +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLTQLAF*RVPACL
Trigger: AAGACAGGCTGGGACACGTCAGAAAGCGAGCTGAGT...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CAGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGACTCAGCTCGCTTTCTaGCGTGTCCCAGCCTGTCTT +
Preference number: 4 (lower is better)
Translates to: QNTYIGSQGRGSSGGAPGTQLAF*RVPACL
Trigger: AAGACAGGCTGGGACACGTCAGAAAGCGAGCTGAGT...CCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CCGAGTCCACCGGGACTCCTGACTCTGGTTGTTGTAGTAGTAAGGCTTCCCTGTACAGCAGCGCTGCAGTaGCAGGCACCGCTGGCATCA +
Preference number: 4 (lower is better)
Translates to: PSPPGLLTLVVVVVRLPCTAALQ*QAPLAS
Trigger: TGATGCCAGCGGTGCCTGTCACTGCAGCGCTGCTGT...ACAGGGAAGCCTTACTACTACAACAACCAGAGTCAGGAGTCCCGGTGGACTCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR GCA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGTGCTGTTCCAGGAAATaGTGCAGGGTCTGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWCCSRK*CRVCLA
Trigger: GGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCA...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTGCTGTTCCAGGAAATaGTGCAGGGTCTGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: LWSGAEGKDCTSLRTRGPCCSRK*CRVCLA
Trigger: GGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCA...GGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGCTGTTCCAGGAAATaGTGCAGGGTCTGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: LRRPWSHCLTKSKAESSSCCSRK*CRVCLA
Trigger: GGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCA...CGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGTTCCGACGCCGGAGCTaGTTGGCTTGTTCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: DTDQTRRRSLRQMLRRPWFRRRS*LACSFS
Trigger: GGAGAAGGAACAAGCCAAGCAGCTCCGGCGTCGGAA...CCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTTTATCCATGAGGTACTaGTGGGCCTGGGACCAAGTG +
Preference number: 4 (lower is better)
Translates to: PTPWYRLPISGLGLRARTLSMRY*WAWDQV
Trigger: CACTTGGTCCCAGGCCCAGCAGTACCTCATGGATAA...AGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp ACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCAGCTGCCCTGTCTCATaGAGCTCGTCCAGGAAGCTC +
Preference number: 4 (lower is better)
Translates to: TDQTRRRSLRQMLRRPWSSCPVS*SSSRKL
Trigger: GAGCTTCCTGGACGAGCTGCATGAGACAGGGCAGCT...GCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAGACATGGAGTGCAGCTaGCCTGTCTCATGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: PWYRLPISGLGLRARTALDMECS*PVSCSS
Trigger: CGAGCTGCATGAGACAGGGCAGCTGCACTCCATGTC...TAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCAACGTCAGTGCTGACTaGCGGGTACAGCTCCATCCA +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLNVSAD*RVQLHP
Trigger: TGGATGGAGCTGTACCCGGCAGTCAGCACTGACGTT...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTTGAACACCAGAGCAGGCACGGCCTaGCTCAGCATGCTTCGAAAG +
Preference number: 4 (lower is better)
Translates to: GAEGKDCTSLRTRGPLNTRAGTA*LSMLRK
Trigger: CTTTCGAAGCATGCTGAGGCAGGCCGTGCCTGCTCT...GGTGTTCAAGGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp GACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACGACTCCAGGGTGATCTaGTCAAAGGCTGAGTCGCAC +
Preference number: 4 (lower is better)
Translates to: DQTRRRSLRQMLRRPWSHDSRVI*SKAESH
Trigger: GTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTC...GTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp GTAGCTCGTGGGGTCATTGGTGGTCGTCCAGCTGCTGTAGGAGTGTCCGCCTTCGACTCCAGGGTGATCTaGTCAAAGGCTGAGTCGCAC +
Preference number: 4 (lower is better)
Translates to: VARGVIGGRPAAVGVSAFDSRVI*SKAESH
Trigger: GTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTC...GAAGGCGGACACTCCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp CTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCACCTTTGGTGTGGAGGTaGTGGCATTCAGTCTCCAAC +
Preference number: 4 (lower is better)
Translates to: LRQMLRRPWSHCLTKSKAPLVWR*WHSVSN
Trigger: GTTGGAGACTGAATGCCAGCACCTCCACACCAAAGG...TGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp TCCAAGGCAGAAAGTAGCTCGTGGGGTCATTGGTGGTCGTCCAGCTGCTGTAGGTTAGGGAGCTCTGCCTaGCGGGGTTCCCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: SKAESSSWGHWWSSSCCRLGSSA*RGSLSC
Trigger: ACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAA...CCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTACTTTCTGCCTTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126955.2
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp CTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGCCTTTGGTGTGGAGGTaGTGGCATTCAGTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: LRRPWSHCLTKSKAESSSPLVWR*WHSVCS
Trigger: GGAGCAGACTGAATGCCAGCACCTCCACACCAAAGG...CGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp GGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTTGAACACCTGGTGGTCGTCCAGCTaGTGTAGGAGTGTCCGCCTT +
Preference number: 4 (lower is better)
Translates to: GAEGKDCTSLRTRGPLNTWWSSS*CRSVRL
Trigger: AAGGCGGACACTCCTACAGCAGCTGGACGACCACCA...GGTGTTCAAGGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGCTTAGCTTCCTCCTCTGTATGCCAGGTGGCATaGGGGGAATGGCTGGTGGTC +
Preference number: 4 (lower is better)
Translates to: RLLQLRPDRSGSGLASSSVCQVA*GEWLVV
Trigger: GACCACCAGCCATTCCCCCCATGCCACCTGGCATAC...AGAGGAGGAAGCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCTGGTATCTGTGTAAGTaGTGGCGGTGCCCCCATTGG +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLWYLCK*WRCPHW
Trigger: CCAATGGGGGCACCGCCACCACTTACACAGATACCA...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCACATCCCCGGCATCATTaGAGGGACCATTCCTGGTAT +
Preference number: 4 (lower is better)
Translates to: ASPTPWYRLPISGLGLRAHPRHH*RDHSWY
Trigger: ATACCAGGAATGGTCCCTCCAATGATGCCGGGGATG...TGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGTCTTCACTTCGACCTaGTTCAGGTTCCAGGAGGGC +
Preference number: 4 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWVFTST*FRFQEG
Trigger: GCCCTCCTGGAACCTGAACCAGGTCGAAGTGAAGAC...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCTTCCTCCTCTTCCTGTaGCTGCCGATGCTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLFLLFL*LPMLSS
Trigger: ACTGGACAGCATCGGCAGCCACAGGAAGAGGAGGAA...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCGACGCCGGAGCTGCTTaGCTTGTTCCTTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: RTHTSGPRGEEVVVEPQGDAGAA*LVPSPS
Trigger: AGAAGGAGAAGGAACAAGCCAAGCAGCTCCGGCGTC...GCCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAACAGCTCCATCCAGGTaGACATGGAGTGCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: PWYRLPISGLGLRARTALTAPSR*TWSAAA
Trigger: GGCAGCTGCACTCCATGTCCACCTGGATGGAGCTGT...TAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTTGAACACCACAGCTCCATCCAGGTaGACATGGAGTGCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: GAEGKDCTSLRTRGPLNTTAPSR*TWSAAA
Trigger: GGCAGCTGCACTCCATGTCCACCTGGATGGAGCTGT...GGTGTTCAAGGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGGCTGGCCCAGCATGTTaGCAAAGCGAACGTCAGTGC +
Preference number: 4 (lower is better)
Translates to: DTDQTRRRSLRQMLRRPWAGPAC*QSERQC
Trigger: GCACTGACGTTCGCTTTGCCAACATGCTGGGCCAGC...CCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGCATGCTTTCGGCCTTTaGTGTGGAGGTGCTGGCATT +
Preference number: 4 (lower is better)
Translates to: SPTPWYRLPISGLGLRARHAFGL*CGGAGI
Trigger: AATGCCAGCACCTCCACACCAAAGGCCGAAAGCATG...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp GTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCAGGGCCGGAGGGATGGTaGGGGCAGCTCCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: VQAACLFPGDPFSHYLLAGPEGW*GQLLFI
Trigger: GATGAAGAGGAGCTGCCCCCACCATCCCTCCGGCCC...TGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGAAGAAGGTGGGAAGATaGGGAGCCTGGTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: LRRPWSHCLTKSKAESSSKKVGR*GAWSSK
Trigger: CTTGGAGGACCAGGCTCCCCATCTTCCCACCTTCTT...CGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCAAGAAGGTGGGAAGATaGGGAGCCTGGTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLKKVGR*GAWSSK
Trigger: CTTGGAGGACCAGGCTCCCCATCTTCCCACCTTCTT...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp GGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGTTGGTGTGGAGGTGCTaGCATTCAGTCTGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: GDPGATASRSPRQKVARGLVWRC*HSVCSN
Trigger: GTTGGAGCAGACTGAATGCCAGCACCTCCACACCAA...CCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp GGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTTGAACACCTCGTCCAGGAAGCTCTaGAAGGCCTCCCGATTCTTC +
Preference number: 4 (lower is better)
Translates to: GAEGKDCTSLRTRGPLNTSSRKL*KASRFF
Trigger: GAAGAATCGGGAGGCCTTTCAGAGCTTCCTGGACGA...GGTGTTCAAGGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp ACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCGATCTGCTCAAAGGCTaGGTCGCACACAAAGCGCTC +
Preference number: 4 (lower is better)
Translates to: TDQTRRRSLRQMLRRPWSDLLKG*VAHKAL
Trigger: GAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATC...GCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp AGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAACCGAAGACCATGATCTaGCCCAAGAAGAAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: RQMLRRPWSHCLTKSKAEPKTMI*PKKKVG
Trigger: TCCCACCTTCTTCTTGGGTCAGATCATGGTCTTCGG...TTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCCCGAAGACCATGATCTaGCCCAAGAAGAAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLPKTMI*PKKKVG
Trigger: TCCCACCTTCTTCTTGGGTCAGATCATGGTCTTCGG...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp CAGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCCGAAGACCATGATCTaGCCCAAGAAGAAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: QNTYIGSQGRGSSGGAPGPKTMI*PKKKVG
Trigger: TCCCACCTTCTTCTTGGGTCAGATCATGGTCTTCGG...CCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCTGTCTTCTCCTTCTTaGTTCCGAAGCCTGGGGAAC +
Preference number: 4 (lower is better)
Translates to: DKTKESEADAEATLEPLPLSSPS*FRSLGN
Trigger: GTTCCCCAGGCTTCGGAATCAAGAAGGAGAAGACAG...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGGAGGTCATGCGTTCATaGTGTTCCAGGAAATGCTGC +
Preference number: 4 (lower is better)
Translates to: SPTPWYRLPISGLGLRAREVMRS*CSRKCC
Trigger: GCAGCATTTCCTGGAACAGCATGAACGCATGACCTC...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp ACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCGGGTGGTGGAGGTCATaGGTTCATGCTGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: TDQTRRRSLRQMLRRPWSGWWRS*VHAVPG
Trigger: TCCTGGAACAGCATGAACGCATGACCTCCACCACCC...GCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGTCATCCCATCCAGGATaGTCTTCAGGGCCTGGATAT +
Preference number: 4 (lower is better)
Translates to: RRRSLRQMLRRPWSHCLTSSHPG*SSGPGY
Trigger: ATATCCAGGCCCTGAAGAGCATCCTGGATGGGATGA...CGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCATCCCATCCAGGATaGTCTTCAGGGCCTGGATAT +
Preference number: 4 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKSSHPG*SSGPGY
Trigger: ATATCCAGGCCCTGAAGAGCATCCTGGATGGGATGA...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCGACATGGAGTGCAGCTaGCCTGTCTCATGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: SGHRPDKTKESEADAEATDMECS*PVSCSS
Trigger: CGAGCTGCATGAGACAGGGCAGCTGCACTCCATGTC...GGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCGTTTCTTGCCCTTTCTaGCATGCTTTCGGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: RSLRQMLRRPWSHCLTKSVSCPF*HAFGLW
Trigger: CCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAAC...GGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp CTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTATGCCAGGTGGCATaGGGGGAATGGCTGGTGGTC +
Preference number: 4 (lower is better)
Translates to: LSLSWRPLLTLSTGITHPVCQVA*GEWLVV
Trigger: GACCACCAGCCATTCCCCCCATGCCACCTGGCATAC...GGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGATGGCGGTGCCCCCATTaGTGGAAGCATTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRRWRCPH*WKHWGQ
Trigger: CTGCCCCCAATGCTTCCACCAATGGGGGCACCGCCA...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCCTTCTCCCGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGCTTAGCTTATCTGTGTAAGTGGTaGCGGTGCCCCCATTGGTGG +
Preference number: 4 (lower is better)
Translates to: AFSRLLQLRPDRSGSGLAYLCKW*RCPHWW
Trigger: CCACCAATGGGGGCACCGCCACCACTTACACAGATA...AGCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp GCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCATGGAGGGACCATTCCTaGTATCTGTGTAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: ASPTPWYRLPISGLGLRAWRDHS*YLCKWW
Trigger: CCACCACTTACACAGATACCAGGAATGGTCCCTCCA...TGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAACATCCCCGGCATCATTaGAGGGACCATTCCTGGTAT +
Preference number: 4 (lower is better)
Translates to: RQMLRRPWSHCLTKSKAEHPRHH*RDHSWY
Trigger: ATACCAGGAATGGTCCCTCCAATGATGCCGGGGATG...TTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCTTCCTCCTCTTCCTGTaGCTGCCGATGCTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: TDQTRRRSLRQMLRRPWSFLLFL*LPMLSS
Trigger: ACTGGACAGCATCGGCAGCCACAGGAAGAGGAGGAA...GCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGAGATCGCTCTGGTTCTaGCTTAGCTTCCTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKRSLWF*LSFLLF
Trigger: GAAGAGGAGGAAGCTAAGCCAGAACCAGAGCGATCT...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTTCTTCTCACTTAGTTTaGGCAAGGCACTGTAGCGGG +
Preference number: 4 (lower is better)
Translates to: PTPWYRLPISGLGLRARTSSHLV*ARHCSG
Trigger: CCCGCTACAGTGCCTTGCCCAAACTAAGTGAGAAGA...AGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AAAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGTCTGCTTGGCCTCCTTaGCTCTCAGCCGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: KSGHRPDKTKESEADAEASAWPP*LSAGPP
Trigger: AGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGA...CGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCGACGCCGGAGCTGCTTaGCTTGTTCCTTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: MLRRPWSHCLTKSKAESSDAGAA*LVPSPS
Trigger: AGAAGGAGAAGGAACAAGCCAAGCAGCTCCGGCGTC...GCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTATCTTCTTCTCATCGTaGAATCGAGCCTTCAACTCC +
Preference number: 4 (lower is better)
Translates to: EQALMLEGEDPALGHPGCIFFSS*NRAFNS
Trigger: GGAGTTGAAGGCTCGATTCCACGATGAGAAGAAGAT...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGTTTCGGCCTTTGGTGTaGAGGTGCTGGCATTCAGTC +
Preference number: 4 (lower is better)
Translates to: PDKTKESEADAEATLEPLFRPLV*RCWHSV
Trigger: GACTGAATGCCAGCACCTCCACACCAAAGGCCGAAA...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTTTTCGGCCTTTGGTGTaGAGGTGCTGGCATTCAGTC +
Preference number: 4 (lower is better)
Translates to: DKTKESEADAEATLEPLPFRPLV*RCWHSV
Trigger: GACTGAATGCCAGCACCTCCACACCAAAGGCCGAAA...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp AGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAACATGCTTTCGGCCTTTaGTGTGGAGGTGCTGGCATT +
Preference number: 4 (lower is better)
Translates to: RQMLRRPWSHCLTKSKAEHAFGL*CGGAGI
Trigger: AATGCCAGCACCTCCACACCAAAGGCCGAAAGCATG...TTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGCATGCTTTCGGCCTTTaGTGTGGAGGTGCTGGCATT +
Preference number: 4 (lower is better)
Translates to: LLASPTPWYRLPISGLGLHAFGL*CGGAGI
Trigger: AATGCCAGCACCTCCACACCAAAGGCCGAAAGCATG...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGGAAGATGGGGAGCCTaGTCCTCCAAGAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: LSLSWRPLLTLSTGITHPGRWGA*SSKSST
Trigger: GGTGCTGCTCTTGGAGGACCAGGCTCCCCATCTTCC...GGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAAGAAGGTGGGAAGATaGGGAGCCTGGTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: DTDQTRRRSLRQMLRRPWKKVGR*GAWSSK
Trigger: CTTGGAGGACCAGGCTCCCCATCTTCCCACCTTCTT...CCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGTTGGTGTGGAGGTGCTaGCATTCAGTCTGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: PDKTKESEADAEATLEPLLVWRC*HSVCSN
Trigger: GTTGGAGCAGACTGAATGCCAGCACCTCCACACCAA...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp GCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAAGTGGTTTGGAAGTTaGCACTGCTCATCCCATCCA +
Preference number: 4 (lower is better)
Translates to: ASPTPWYRLPISGLGLRAKWFGS*HCSSHP
Trigger: TGGATGGGATGAGCAGTGTCAACTTCCAAACCACTT...TGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTATGCAGCTGCTGGTCCTaGGCAAAGCTGGGGTTATCC +
Preference number: 4 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVCSCWS*AKLGLS
Trigger: GGATAACCCCAGCTTTGCTCAGGACCAGCAGCTGCA...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGTCTTGTCAAAGCTTATaGCGTGGGCGAAGTCCTCAA +
Preference number: 4 (lower is better)
Translates to: RRRSLRQMLRRPWSHCLTSCQSL*RGRSPQ
Trigger: TTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGA...CGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCGCTCCGACTCCAGGGTaGTCTGCTCAAAGGCTGAGT +
Preference number: 4 (lower is better)
Translates to: AACLFPGDPFSHYLLASPAPTPG*SAQRLS
Trigger: ACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGC...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp GACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGCCGAAGACCATGATCTaGCCCAAGAAGAAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: DTDQTRRRSLRQMLRRPWPKTMI*PKKKVG
Trigger: TCCCACCTTCTTCTTGGGTCAGATCATGGTCTTCGG...CCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp AGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCACTCAGCTCGCTTTCTaGCGTGTCCCAGCCTGTCTT +
Preference number: 4 (lower is better)
Translates to: SGHRPDKTKESEADAEATTQLAF*RVPACL
Trigger: AAGACAGGCTGGGACACGTCAGAAAGCGAGCTGAGT...GGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGCAGCAGCTCTGCCTTAGACTTGAGTACGCTGGGCTTCTCCCACACGGATTGCTGTAAGTGGTGGCGGTaGCCCCATTGGTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: SSSSALDLSTLGFSHTDCCKWWR*PHWWKH
Trigger: ATGCTTCCACCAATGGGGGCACCGCCACCACTTACA...GCAATCCGTGTGGGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAGCTGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR GCA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGTTTGAAAGCCTGTTTTaGCTTCTCCCGGTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: SPTPWYRLPISGLGLRARFESLF*LLPVAP
Trigger: TGGAGCAACCGGGAGAAGGCAAAACAGGCTTTCAAA...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCATTTGAAAGCCTGTTTTaGCTTCTCCCGGTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: ASPTPWYRLPISGLGLRAFESLF*LLPVAP
Trigger: TGGAGCAACCGGGAGAAGGCAAAACAGGCTTTCAAA...TGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCTGTTCCAGGAAATGCTaGAGGGTCTGCTTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: SGHRPDKTKESEADAEATCSRKC*RVCLAS
Trigger: GGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACA...GGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCTCATCCCATCCAGGATaGTCTTCAGGGCCTGGATAT +
Preference number: 4 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLSSHPG*SSGPGY
Trigger: ATATCCAGGCCCTGAAGAGCATCCTGGATGGGATGA...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCGGCGAAGTCCTCAAATaGTGTGTTCACCTCCACACA +
Preference number: 4 (lower is better)
Translates to: LWSGAEGKDCTSLRTRGPGEVLK*CVHLHT
Trigger: TGTGTGGAGGTGAACACAGCATTTGAGGACTTCGCC...GGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118287.9
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTACCGTTCCCTCTCCCGTaGCTCTGCTTTTTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVPFPLP*LCFFQQ
Trigger: CTGCTGGAAAAAGCAGAGGCACGGGAGAGGGAACGG...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCAGAAAGGCAGCTTCTCTaGGCCGCATCCTTCGGGCCT +
Preference number: 4 (lower is better)
Translates to: VQAACLFPGDPFSHYLLAERQLL*AASFGP
Trigger: AGGCCCGAAGGATGCGGCGCAGAGAAGCTGCCTTTC...TGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AAAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGGAAAGGCAGCTTCTCTaGGCCGCATCCTTCGGGCCT +
Preference number: 4 (lower is better)
Translates to: KSGHRPDKTKESEADAEAERQLL*AASFGP
Trigger: AGGCCCGAAGGATGCGGCGCAGAGAAGCTGCCTTTC...CGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCAGAGCAGGCACGGCCTaGCTCAGCATGCTTCGAAAG +
Preference number: 4 (lower is better)
Translates to: AACLFPGDPFSHYLLASPRAGTA*LSMLRK
Trigger: CTTTCGAAGCATGCTGAGGCAGGCCGTGCCTGCTCT...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGGTTTCTTGCCCTTTCTaGCATGCTTTCGGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: LRRPWSHCLTKSKAESSSVSCPF*HAFGLW
Trigger: CCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAAC...CGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGTGCGATGGTGTTTCTTaGCCTTTCTGCCATGCTTTC +
Preference number: 4 (lower is better)
Translates to: RRRSLRQMLRRPWSHCLTCDGVS*PFCHAF
Trigger: GAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCA...CGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWVSVNA*DGVSCP
Trigger: AGGGCAAGAAACACCATCGCAAGCGTTCACACTCAC...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp CAGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: QNTYIGSQGRGSSGGAPGVSVNA*DGVSCP
Trigger: AGGGCAAGAAACACCATCGCAAGCGTTCACACTCAC...CCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGGCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTTTAGGGAGCTCTGCCTaGCGGGGTTCCCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: RLCPSSLSLSWRPLLTLSLGSSA*RGSLSC
Trigger: ACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAA...AGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGATTAGGGAGCTCTGCCTaGCGGGGTTCCCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRRLGSSA*RGSLSC
Trigger: ACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAA...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp AGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCCTTTGGTGTGGAGGTaGTGGCATTCAGTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: SGHRPDKTKESEADAEATPLVWR*WHSVCS
Trigger: GGAGCAGACTGAATGCCAGCACCTCCACACCAAAGG...GGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp ACTATCTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGTGGTGGTCGTCCAGCTaGTGTAGGAGTGTCCGCCTT +
Preference number: 4 (lower is better)
Translates to: TIYWHHPPRGIDCPSLVWWWSSS*CRSVRL
Trigger: AAGGCGGACACTCCTACAGCAGCTGGACGACCACCA...CCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAGATAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCTGGTGGTCGTCCAGCTaGTGTAGGAGTGTCCGCCTT +
Preference number: 4 (lower is better)
Translates to: AACLFPGDPFSHYLLASPWWSSS*CRSVRL
Trigger: AAGGCGGACACTCCTACAGCAGCTGGACGACCACCA...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCCTGTTTTGCCTTCTCCCGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTTGGTATCTGTGTAAGTaGTGGCGGTGCCCCCATTGG +
Preference number: 4 (lower is better)
Translates to: ACFAFSRLLQLRPDRSGSWYLCK*WRCPHW
Trigger: CCAATGGGGGCACCGCCACCACTTACACAGATACCA...AGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCAAAACAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp GCCTTCTCCCGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGCTTAGCTCATCCCCGGCATCATTaGAGGGACCATTCCTGGTAT +
Preference number: 4 (lower is better)
Translates to: AFSRLLQLRPDRSGSGLAHPRHH*RDHSWY
Trigger: ATACCAGGAATGGTCCCTCCAATGATGCCGGGGATG...AGCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCTCTTTCCAGGGACACTaGGACAGCAGCAGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: AACLFPGDPFSHYLLASPSFQGH*DSSSSA
Trigger: GGCAGAGCTGCTGCTGTCCCAGTGTCCCTGGAAAGA...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCTCTTTCCAGGGACACTaGGACAGCAGCAGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: LSLSWRPLLTLSTGITHPSFQGH*DSSSSA
Trigger: GGCAGAGCTGCTGCTGTCCCAGTGTCCCTGGAAAGA...GGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGAGATCGCTCTGGTTCTaGCTTAGCTTCCTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: PDKTKESEADAEATLEPLRSLWF*LSFLLF
Trigger: GAAGAGGAGGAAGCTAAGCCAGAACCAGAGCGATCT...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CAGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGTCTTCTCACTTAGTTTaGGCAAGGCACTGTAGCGGG +
Preference number: 4 (lower is better)
Translates to: QNTYIGSQGRGSSGGAPGSSHLV*ARHCSG
Trigger: CCCGCTACAGTGCCTTGCCCAAACTAAGTGAGAAGA...CCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGTCTTCTCACTTAGTTTaGGCAAGGCACTGTAGCGGG +
Preference number: 4 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWSSHLV*ARHCSG
Trigger: CCCGCTACAGTGCCTTGCCCAAACTAAGTGAGAAGA...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTAGCTGGCCCAGCATGTTaGCAAAGCGAACGTCAGTGC +
Preference number: 4 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVAGPAC*QSERQC
Trigger: GCACTGACGTTCGCTTTGCCAACATGCTGGGCCAGC...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCAGGAGTAGAGCCCGGCTaGCCCAGCATGTTGGCAAAG +
Preference number: 4 (lower is better)
Translates to: VQAACLFPGDPFSHYLLAGVEPG*PSMLAK
Trigger: CTTTGCCAACATGCTGGGCCAGCCGGGCTCTACTCC...TGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGAGGAAGATGGGGAGCCTaGTCCTCCAAGAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRRGRWGA*SSKSST
Trigger: GGTGCTGCTCTTGGAGGACCAGGCTCCCCATCTTCC...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp ATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTTGGTGTGGAGGTGCTaGCATTCAGTCTGCTCCAAC +
Preference number: 4 (lower is better)
Translates to: MLRRPWSHCLTKSKAESSLVWRC*HSVCSN
Trigger: GTTGGAGCAGACTGAATGCCAGCACCTCCACACCAA...GCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
3UTR CAA 72 bp CAGGGACACTGGGACAGCAGCAGCTCTGCCTTAGACTaGAGTACGCTGGGCTTCTCCCACACGGATTGCTTA +
Preference number: 4 (lower is better)
Translates to: QGHWDSSSSALD*STLGFSHTDCL
Trigger: TAAGCAATCCGTGTGGGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAGCTGCTGCTGTCCCAGTGTCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR TCA 90 bp GGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGCCCTTAGCAGTTCTTTaGAAGCCTGTTTTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: GDPGATASRSPRQKVARGPLAVL*KPVLPS
Trigger: AGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGG...CCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCCATGGCCTGTTCCCATaGAGCATTGGAAGGGACAGC +
Preference number: 4 (lower is better)
Translates to: LSLSWRPLLTLSTGITHPHGLFP*SIGRDS
Trigger: GCTGTCCCTTCCAATGCTTCATGGGAACAGGCCATG...GGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTATCGTCCAGGAAGCTCTaGAAGGCCTCCCGATTCTTC +
Preference number: 4 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVSSRKL*KASRFF
Trigger: GAAGAATCGGGAGGCCTTTCAGAGCTTCCTGGACGA...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGTCTTGTCAAAGCTTATaGCGTGGGCGAAGTCCTCAA +
Preference number: 4 (lower is better)
Translates to: LLASPTPWYRLPISGLGLSCQSL*RGRSPQ
Trigger: TTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGA...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTTCTTGTCAAAGCTTATaGCGTGGGCGAAGTCCTCAA +
Preference number: 4 (lower is better)
Translates to: DKTKESEADAEATLEPLPSCQSL*RGRSPQ
Trigger: TTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGA...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp AAAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGGCTCCGACTCCAGGGTaGTCTGCTCAAAGGCTGAGT +
Preference number: 4 (lower is better)
Translates to: KSGHRPDKTKESEADAEAAPTPG*SAQRLS
Trigger: ACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGC...CGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp CTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGGTTTTCCGAAGACCATaGTTGAGGGTGAGTGTGAAC +
Preference number: 4 (lower is better)
Translates to: LRRPWSHCLTKSKAESSSVFRRP*LRVSVN
Trigger: GTTCACACTCACCCTCAATCATGGTCTTCGGAAAAC...CGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126955.2
CDS-3UTR GCA 90 bp CTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCTGTAAGTGGTGGCGGTaGCCCCATTGGTGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: LSLSWRPLLTLSTGITHPCKWWR*PHWWKH
Trigger: ATGCTTCCACCAATGGGGGCACCGCCACCACTTACA...GGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACAGGTGGACATGGAGTaGAGCTGCCCTGTCTCATGC +
Preference number: 4 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRRQVDME*SCPVSC
Trigger: GCATGAGACAGGGCAGCTGCACTCCATGTCCACCTG...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCGACTCCAGGGTGATCTaGTCAAAGGCTGAGTCGCAC +
Preference number: 4 (lower is better)
Translates to: AACLFPGDPFSHYLLASPDSRVI*SKAESH
Trigger: GTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTC...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp TGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTTGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: WSGAEGKDCTSLRTRGPLVSVNA*DGVSCP
Trigger: AGGGCAAGAAACACCATCGCAAGCGTTCACACTCAC...CAAGGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp ACTATCTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGCCTTTGGTGTGGAGGTaGTGGCATTCAGTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: TIYWHHPPRGIDCPSLVWPLVWR*WHSVCS
Trigger: GGAGCAGACTGAATGCCAGCACCTCCACACCAAAGG...CCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAGATAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
CDS-3UTR CCA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCCATTGGTGGAAGCATTaGGGGCAGTATGCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: AACLFPGDPFSHYLLASPHWWKH*GQYARW
Trigger: CCACCTGGCATACTGCCCCCAATGCTTCCACCAATG...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AAAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGCGGTGCCCCCATTGGTaGAAGCATTGGGGGCAGTAT +
Preference number: 4 (lower is better)
Translates to: KSGHRPDKTKESEADAEARCPHW*KHWGQY
Trigger: ATACTGCCCCCAATGCTTCCACCAATGGGGGCACCG...CGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACTATCTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGTGGTATCTGTGTAAGTaGTGGCGGTGCCCCCATTGG +
Preference number: 4 (lower is better)
Translates to: TIYWHHPPRGIDCPSLVWWYLCK*WRCPHW
Trigger: CCAATGGGGGCACCGCCACCACTTACACAGATACCA...CCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAGATAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCTGGGACCAAGTGGTTTaGAAGTTGACACTGCTCATC +
Preference number: 4 (lower is better)
Translates to: RTHTSGPRGEEVVVEPQGWDQVV*KLTLLI
Trigger: GATGAGCAGTGTCAACTTCCAAACCACTTGGTCCCA...GCCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGATCTTCTTCTCATCGTaGAATCGAGCCTTCAACTCC +
Preference number: 4 (lower is better)
Translates to: RRRSLRQMLRRPWSHCLTIFFSS*NRAFNS
Trigger: GGAGTTGAAGGCTCGATTCCACGATGAGAAGAAGAT...CGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCATGCTTTCGGCCTTTaGTGTGGAGGTGCTGGCATT +
Preference number: 4 (lower is better)
Translates to: SGHRPDKTKESEADAEATHAFGL*CGGAGI
Trigger: AATGCCAGCACCTCCACACCAAAGGCCGAAAGCATG...GGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCTCACTGTCAGGACTaGTCGACTTGTGTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKSHCQD*STCVFF
Trigger: AAAGAAGACACAAGTCGACCAGTCCTGACAGTGAGA...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp ACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAAAGTGAGCCGTCGCTGCAGTaGCAGGCACCGCTGGCATCA +
Preference number: 4 (lower is better)
Translates to: TLRGANSSVLGVGYFRKSEPSLQ*QAPLAS
Trigger: TGATGCCAGCGGTGCCTGTCACTGCAGCGACGGCTC...ACTTTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp AGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCCCCTTAGCAGTTCTTTaGAAGCCTGTTTTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: RTHTSGPRGEEVVVEPQGPLAVL*KPVLPS
Trigger: AGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGG...GCCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CAGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCCCTTAGCAGTTCTTTaGAAGCCTGTTTTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: QNTYIGSQGRGSSGGAPGPLAVL*KPVLPS
Trigger: AGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGG...CCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGAGATCTGCTCAAAGGCTaGGTCGCACACAAAGCGCTC +
Preference number: 4 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRRDLLKG*VAHKAL
Trigger: GAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATC...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR TCA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCCTGTCTTCTCCTTCTTaGTTCCGAAGCCTGGGGAAC +
Preference number: 4 (lower is better)
Translates to: AACLFPGDPFSHYLLASPLSSPS*FRSLGN
Trigger: GTTCCCCAGGCTTCGGAATCAAGAAGGAGAAGACAG...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTACTGTCTTCTCCTTCTTaGTTCCGAAGCCTGGGGAAC +
Preference number: 4 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVLSSPS*FRSLGN
Trigger: GTTCCCCAGGCTTCGGAATCAAGAAGGAGAAGACAG...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCGGACAGCAGCAGCTCTaGCTTAGACTTGAGTACGCT +
Preference number: 4 (lower is better)
Translates to: AACLFPGDPFSHYLLASPGQQQL*LRLEYA
Trigger: AGCGTACTCAAGTCTAAGGCAGAGCTGCTGCTGTCC...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTAGGACAGCAGCAGCTCTaGCTTAGACTTGAGTACGCT +
Preference number: 4 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVGQQQL*LRLEYA
Trigger: AGCGTACTCAAGTCTAAGGCAGAGCTGCTGCTGTCC...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp TGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCTGTTCCAGGAAATGCTaGAGGGTCTGCTTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: CPSSLSLSWRPLLTLSTGCSRKC*RVCLAS
Trigger: GGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACA...GCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACGGGTGGTGGAGGTCATaGGTTCATGCTGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: AVSKQPVSFLETPSHTIYGWWRS*VHAVPG
Trigger: TCCTGGAACAGCATGAACGCATGACCTCCACCACCC...GTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTATTATCCATGAGGTACTaGTGGGCCTGGGACCAAGTG +
Preference number: 4 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVLSMRY*WAWDQV
Trigger: CACTTGGTCCCAGGCCCAGCAGTACCTCATGGATAA...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AGGCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTGACTCCAGGGTGATCTaGTCAAAGGCTGAGTCGCAC +
Preference number: 4 (lower is better)
Translates to: RLCPSSLSLSWRPLLTLSDSRVI*SKAESH
Trigger: GTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTC...AGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp TCCAAGGCAGAAAGTAGCTCGTGGGGTCATTGGTGGTCGTCCAGCTGCTGTAGGGTTTCTTGCCCTTTCTaGCATGCTTTCGGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: SKAESSSWGHWWSSSCCRVSCPF*HAFGLW
Trigger: CCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAAC...CCTACAGCAGCTGGACGACCACCAATGACCCCACGAGCTACTTTCTGCCTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp CCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGTCATTGCGATGGTGTTTCTTaGCCTTTCTGCCATGCTTTC +
Preference number: 4 (lower is better)
Translates to: PWSHCLTKSKAESSSWGHCDGVS*PFCHAF
Trigger: GAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCA...ATGACCCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGGCGAAGTCCTCAAATaGTGTGTTCACCTTAAGGAT +
Preference number: 4 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWGEVLK*CVHLKD
Trigger: ATCCTTAAGGTGAACACAGCATTTGAGGACTTCGCC...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136980.8
CDS-3UTR CCA 90 bp GAAGGGACAGCCTTGTCCCTTAGCAGTTCTTTGAAAGCCTGTTTTGCCTTCTCCAGTGACAGGCACCGCTaGCATCAGCATCCCCGGCAT +
Preference number: 4 (lower is better)
Translates to: EGTALSLSSSLKACFAFSSDRHR*HQHPRH
Trigger: ATGCCGGGGATGCTGATGCCAGCGGTGCCTGTCACT...GGAGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGGACAAGGCTGTCCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp AAAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGGTCTTCACTTCGACCTaGTTCAGGTTCCAGGAGGGC +
Preference number: 4 (lower is better)
Translates to: KSGHRPDKTKESEADAEAVFTST*FRFQEG
Trigger: GCCCTCCTGGAACCTGAACCAGGTCGAAGTGAAGAC...CGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCTCAAAGCTTATGACGTaGGCGAAGTCCTCAAATGCT +
Preference number: 4 (lower is better)
Translates to: RTHTSGPRGEEVVVEPQGSKLMT*AKSSNA
Trigger: AGCATTTGAGGACTTCGCCCACGTCATAAGCTTTGA...GCCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCTTTCGGCCTTTGGTGTaGAGGTGCTGGCATTCAGTC +
Preference number: 4 (lower is better)
Translates to: LSLSWRPLLTLSTGITHPFRPLV*RCWHSV
Trigger: GACTGAATGCCAGCACCTCCACACCAAAGGCCGAAA...GGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCCATGCTTTCGGCCTTTaGTGTGGAGGTGCTGGCATT +
Preference number: 4 (lower is better)
Translates to: AACLFPGDPFSHYLLASPHAFGL*CGGAGI
Trigger: AATGCCAGCACCTCCACACCAAAGGCCGAAAGCATG...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTATAAAGAAGGTGGGAAGATaGGGAGCCTGGTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: FLETPSHTIYWHHPPRGIKKVGR*GAWSSK
Trigger: CTTGGAGGACCAGGCTCCCCATCTTCCCACCTTCTT...TATACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGTCTCACTGTCAGGACTaGTCGACTTGTGTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: LLASPTPWYRLPISGLGLSHCQD*STCVFF
Trigger: AAAGAAGACACAAGTCGACCAGTCCTGACAGTGAGA...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGTCTCACTGTCAGGACTaGTCGACTTGTGTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: PDKTKESEADAEATLEPLSHCQD*STCVFF
Trigger: AAAGAAGACACAAGTCGACCAGTCCTGACAGTGAGA...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp CAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCTCTCACTGTCAGGACTaGTCGACTTGTGTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: QTRRRSLRQMLRRPWSHCSHCQD*STCVFF
Trigger: AAAGAAGACACAAGTCGACCAGTCCTGACAGTGAGA...GCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACTTGATTCCGAAGCCTaGGGAACGGTTAGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRRLDSEA*GTVREL
Trigger: GAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAG...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp AGGCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTCTTGATTCCGAAGCCTaGGGAACGGTTAGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: RLCPSSLSLSWRPLLTLSLDSEA*GTVREL
Trigger: GAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAG...AGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AAAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGCTTGATTCCGAAGCCTaGGGAACGGTTAGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: KSGHRPDKTKESEADAEALDSEA*GTVREL
Trigger: GAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAG...CGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp GTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCACTTGATTCCGAAGCCTaGGGAACGGTTAGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: VQAACLFPGDPFSHYLLALDSEA*GTVREL
Trigger: GAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAG...TGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR CAA 72 bp AGCAGTTCTTTGAAAGCCTGTTTTGCCTTCTCCCGGTaGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: SSSLKACFAFSR*LQLRPDRSGSG
Trigger: GCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCAAAACAGGCTTTCAAAGAACTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR TCA 90 bp GTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCACTGTCTTCTCCTTCTTaGTTCCGAAGCCTGGGGAAC +
Preference number: 4 (lower is better)
Translates to: VQAACLFPGDPFSHYLLALSSPS*FRSLGN
Trigger: GTTCCCCAGGCTTCGGAATCAAGAAGGAGAAGACAG...TGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACTGTCTTCTCCTTCTTaGTTCCGAAGCCTGGGGAAC +
Preference number: 4 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRRLSSPS*FRSLGN
Trigger: GTTCCCCAGGCTTCGGAATCAAGAAGGAGAAGACAG...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp TGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCCATTGTAGTAGTAGATaGGCCCGTCAGGGGCTACGT +
Preference number: 4 (lower is better)
Translates to: CPSSLSLSWRPLLTLSTGHCSSR*ARQGLR
Trigger: ACGTAGCCCCTGACGGGCGCATCTACTACTACAATG...GCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp ACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCTGTAGTGTCTGTAGTTaGTGGGTCTGCTGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: TDQTRRRSLRQMLRRPWSCSVCS*WVCCFP
Trigger: AGGAAAACAGCAGACCCAGCAACTACAGACACTACA...GCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp ACTATCTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGAGGTCATGCGTTCATaGTGTTCCAGGAAATGCTGC +
Preference number: 4 (lower is better)
Translates to: TIYWHHPPRGIDCPSLVWEVMRS*CSRKCC
Trigger: GCAGCATTTCCTGGAACAGCATGAACGCATGACCTC...CCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAGATAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGCTCAAAGCAGATAAGTaGATCTTCCTTGTCCATGTT +
Preference number: 4 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKLKADK*IFLVHV
Trigger: AACATGGACAAGGAAGATGCACTTATCTGCTTTGAG...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AAAGCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGGAAAGGCAGCTTCTCTaGGCCGCATCCTTCGGGCCT +
Preference number: 4 (lower is better)
Translates to: KATLRGANSSVLGVGYFRERQLL*AASFGP
Trigger: AGGCCCGAAGGATGCGGCGCAGAGAAGCTGCCTTTC...CCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: ACLFPGDPFSHYLLASPTVSVNA*DGVSCP
Trigger: AGGGCAAGAAACACCATCGCAAGCGTTCACACTCAC...GGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATTATCTGTGTAAGTGGTaGCGGTGCCCCCATTGGTGG +
Preference number: 4 (lower is better)
Translates to: SKQPVSFLETPSHTIYWHYLCKW*RCPHWW
Trigger: CCACCAATGGGGGCACCGCCACCACTTACACAGATA...ATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTATGGAGGGACCATTCCTaGTATCTGTGTAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVWRDHS*YLCKWW
Trigger: CCACCACTTACACAGATACCAGGAATGGTCCCTCCA...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACCATCCCCGGCATCATTaGAGGGACCATTCCTGGTAT +
Preference number: 4 (lower is better)
Translates to: AVSKQPVSFLETPSHTIYHPRHH*RDHSWY
Trigger: ATACCAGGAATGGTCCCTCCAATGATGCCGGGGATG...GTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAAAGTGACAGGCACCGCTaGCATCAGCATCCCCGGCAT +
Preference number: 4 (lower is better)
Translates to: ATLRGANSSVLGVGYFRKSDRHR*HQHPRH
Trigger: ATGCCGGGGATGCTGATGCCAGCGGTGCCTGTCACT...TTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTATCAAAGCTTATGACGTaGGCGAAGTCCTCAAATGCT +
Preference number: 4 (lower is better)
Translates to: PWYRLPISGLGLRARTALSKLMT*AKSSNA
Trigger: AGCATTTGAGGACTTCGCCCACGTCATAAGCTTTGA...TAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AAAGCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGGGAAGATGGGGAGCCTaGTCCTCCAAGAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: KATLRGANSSVLGVGYFRGRWGA*SSKSST
Trigger: GGTGCTGCTCTTGGAGGACCAGGCTCCCCATCTTCC...CCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp CCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTATCTCACTGTCAGGACTaGTCGACTTGTGTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: PWYRLPISGLGLRARTALSHCQD*STCVFF
Trigger: AAAGAAGACACAAGTCGACCAGTCCTGACAGTGAGA...TAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp TCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCTTGATTCCGAAGCCTaGGGAACGGTTAGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: SKQPVSFLETPSHTIYWHLDSEA*GTVREL
Trigger: GAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAG...ATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp GCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCAAGTGGTTTGGAAGTTaGCACTGCTCATCCCATCCA +
Preference number: 4 (lower is better)
Translates to: ACLFPGDPFSHYLLASPTKWFGS*HCSSHP
Trigger: TGGATGGGATGAGCAGTGTCAACTTCCAAACCACTT...GGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR TCA 90 bp AAAGCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGTGCAGCTGCTGGTCCTaGGCAAAGCTGGGGTTATCC +
Preference number: 4 (lower is better)
Translates to: KATLRGANSSVLGVGYFRCSCWS*AKLGLS
Trigger: GGATAACCCCAGCTTTGCTCAGGACCAGCAGCTGCA...CCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp TCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATGGACAGCAGCAGCTCTaGCTTAGACTTGAGTACGCT +
Preference number: 4 (lower is better)
Translates to: SKQPVSFLETPSHTIYWHGQQQL*LRLEYA
Trigger: AGCGTACTCAAGTCTAAGGCAGAGCTGCTGCTGTCC...ATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGAGAGGTCATGCGTTCATaGTGTTCCAGGAAATGCTGC +
Preference number: 4 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRREVMRS*CSRKCC
Trigger: GCAGCATTTCCTGGAACAGCATGAACGCATGACCTC...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp TCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATTTATCCATGAGGTACTaGTGGGCCTGGGACCAAGTG +
Preference number: 4 (lower is better)
Translates to: SKQPVSFLETPSHTIYWHLSMRY*WAWDQV
Trigger: CACTTGGTCCCAGGCCCAGCAGTACCTCATGGATAA...ATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACCTCAAAGCAGATAAGTaGATCTTCCTTGTCCATGTT +
Preference number: 4 (lower is better)
Translates to: DQTRRRSLRQMLRRPWSHLKADK*IFLVHV
Trigger: AACATGGACAAGGAAGATGCACTTATCTGCTTTGAG...GTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACGGCGAAGTCCTCAAATaGTGTGTTCACCTCCACACA +
Preference number: 4 (lower is better)
Translates to: AVSKQPVSFLETPSHTIYGEVLK*CVHLHT
Trigger: TGTGTGGAGGTGAACACAGCATTTGAGGACTTCGCC...GTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118287.9
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCTGCGATGGTGTTTCTTaGCCTTTCTGCCATGCTTTC +
Preference number: 4 (lower is better)
Translates to: ACLFPGDPFSHYLLASPTCDGVS*PFCHAF
Trigger: GAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCA...GGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TTGTCCCTTAGCAGTTCTTTGAAAGCCTGTTTTGCCTTCTCCCGGTTGCTCCAACGGTGCCCCCATTGGTaGAAGCATTGGGGGCAGTAT +
Preference number: 4 (lower is better)
Translates to: LSLSSSLKACFAFSRLLQRCPHW*KHWGQY
Trigger: ATACTGCCCCCAATGCTTCCACCAATGGGGGCACCG...TTGGAGCAACCGGGAGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGGACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGATGGAGGGACCATTCCTaGTATCTGTGTAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRRWRDHS*YLCKWW
Trigger: CCACCACTTACACAGATACCAGGAATGGTCCCTCCA...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAAAGTAGTGACAGGCACCGCTaGCATCAGCATCCCCGGCAT +
Preference number: 4 (lower is better)
Translates to: TLRGANSSVLGVGYFRKSSDRHR*HQHPRH
Trigger: ATGCCGGGGATGCTGATGCCAGCGGTGCCTGTCACT...ACTTTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp TTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTATAAGATCGCTCTGGTTCTaGCTTAGCTTCCTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: FLETPSHTIYWHHPPRGIRSLWF*LSFLLF
Trigger: GAAGAGGAGGAAGCTAAGCCAGAACCAGAGCGATCT...TATACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp CTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCTGGGACCAAGTGGTTTaGAAGTTGACACTGCTCATC +
Preference number: 4 (lower is better)
Translates to: LSLSWRPLLTLSTGITHPWDQVV*KLTLLI
Trigger: GATGAGCAGTGTCAACTTCCAAACCACTTGGTCCCA...GGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAAAGTGGAGTAGAGCCCGGCTaGCCCAGCATGTTGGCAAAG +
Preference number: 4 (lower is better)
Translates to: TLRGANSSVLGVGYFRKSGVEPG*PSMLAK
Trigger: CTTTGCCAACATGCTGGGCCAGCCGGGCTCTACTCC...ACTTTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGCTCAAAGCAGATAAGTaGATCTTCCTTGTCCATGTT +
Preference number: 4 (lower is better)
Translates to: DTDQTRRRSLRQMLRRPWLKADK*IFLVHV
Trigger: AACATGGACAAGGAAGATGCACTTATCTGCTTTGAG...CCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp GTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATGCGATGGTGTTTCTTaGCCTTTCTGCCATGCTTTC +
Preference number: 4 (lower is better)
Translates to: VQAACLFPGDPFSHYLLACDGVS*PFCHAF
Trigger: GAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCA...TGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR GCA 90 bp AAAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGTGCGATGGTGTTTCTTaGCCTTTCTGCCATGCTTTC +
Preference number: 4 (lower is better)
Translates to: KSGHRPDKTKESEADAEACDGVS*PFCHAF
Trigger: GAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCA...CGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp GCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAAGACGCCGGAGCTGCTTaGCTTGTTCCTTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: ATLRGANSSVLGVGYFRKDAGAA*LVPSPS
Trigger: AGAAGGAGAAGGAACAAGCCAAGCAGCTCCGGCGTC...TTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGGACCAAGTGGTTTaGAAGTTGACACTGCTCATC +
Preference number: 4 (lower is better)
Translates to: AVSKQPVSFLETPSHTIYWDQVV*KLTLLI
Trigger: GATGAGCAGTGTCAACTTCCAAACCACTTGGTCCCA...GTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCATCTTCTTCTCATCGTaGAATCGAGCCTTCAACTCC +
Preference number: 4 (lower is better)
Translates to: ACLFPGDPFSHYLLASPTIFFSS*NRAFNS
Trigger: GGAGTTGAAGGCTCGATTCCACGATGAGAAGAAGAT...GGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR CAA 72 bp GCATTGGAAGGGACAGCCTTGTCCCTTAGCAGTTCTTaGAAAGCCTGTTTTGCCTTCTCCCGGTTGCTCCAA +
Preference number: 4 (lower is better)
Translates to: ALEGTALSLSSS*KACFAFSRLLQ
Trigger: TTGGAGCAACCGGGAGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGGACAAGGCTGTCCCTTCCAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR TCA 90 bp GCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAACTGTCTTCTCCTTCTTaGTTCCGAAGCCTGGGGAAC +
Preference number: 4 (lower is better)
Translates to: ATLRGANSSVLGVGYFRKLSSPS*FRSLGN
Trigger: GTTCCCCAGGCTTCGGAATCAAGAAGGAGAAGACAG...TTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp TCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATTTTGAAAGCCTGTTTTaGCTTCTCCCGGTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: SKQPVSFLETPSHTIYWHFESLF*LLPVAP
Trigger: TGGAGCAACCGGGAGAAGGCAAAACAGGCTTTCAAA...ATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp ACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAAAGTTATCTGTGTAAGTGGTaGCGGTGCCCCCATTGGTGG +
Preference number: 4 (lower is better)
Translates to: TLRGANSSVLGVGYFRKSYLCKW*RCPHWW
Trigger: CCACCAATGGGGGCACCGCCACCACTTACACAGATA...ACTTTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GAAGGGACAGCCTTGTCCCTTAGCAGTTCTTTGAAAGCCTGTTTTGCCTTCTCCTGGAGGGACCATTCCTaGTATCTGTGTAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: EGTALSLSSSLKACFAFSWRDHS*YLCKWW
Trigger: CCACCACTTACACAGATACCAGGAATGGTCCCTCCA...GGAGAAGGCAAAACAGGCTTTCAAAGAACTGCTAAGGGACAAGGCTGTCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CCA 90 bp AGGCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTTCAAAGCTTATGACGTaGGCGAAGTCCTCAAATGCT +
Preference number: 4 (lower is better)
Translates to: RLCPSSLSLSWRPLLTLSSKLMT*AKSSNA
Trigger: AGCATTTGAGGACTTCGCCCACGTCATAAGCTTTGA...AGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp GCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAATTGGTGTGGAGGTGCTaGCATTCAGTCTCCAACACC +
Preference number: 4 (lower is better)
Translates to: ATLRGANSSVLGVGYFRKLVWRC*HSVSNT
Trigger: GGTGTTGGAGACTGAATGCCAGCACCTCCACACCAA...TTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000145482.8
CDS-3UTR CCA 90 bp AAAGCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGTTTCGGCCTTTGGTGTaGAGGTGCTGGCATTCAGTC +
Preference number: 4 (lower is better)
Translates to: KATLRGANSSVLGVGYFRFRPLV*RCWHSV
Trigger: GACTGAATGCCAGCACCTCCACACCAAAGGCCGAAA...CCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CCA 90 bp TGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCTCTCACTGTCAGGACTaGTCGACTTGTGTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: CPSSLSLSWRPLLTLSTGSHCQD*STCVFF
Trigger: AAAGAAGACACAAGTCGACCAGTCCTGACAGTGAGA...GCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000136980.8
ENSMUST00000145482.8
3UTR CAA 72 bp CTTAGACTTGAGTACGCTGGGCTTCTCCCACACGGATaGCTTATCATCAGCATTGTAGTAGTAGATGCGCCC +
Preference number: 4 (lower is better)
Translates to: LRLEYAGLLPHG*LIISIVVVDAP
Trigger: GGGCGCATCTACTACTACAATGCTGATGATAAGCAATCCGTGTGGGAGAAGCCCAGCGTACTCAAGTCTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
3UTR CAA 72 bp ATGGCCTGTTCCCATGAAGCATTGGAAGGGACAGCCTaGTCCCTTAGCAGTTCTTTGAAAGCCTGTTTTGCC +
Preference number: 4 (lower is better)
Translates to: MACSHEALEGTA*SLSSSLKACFA
Trigger: GGCAAAACAGGCTTTCAAAGAACTGCTAAGGGACAAGGCTGTCCCTTCCAATGCTTCATGGGAACAGGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR GCA 90 bp GCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAAGTTTCTTGCCCTTTCTaGCATGCTTTCGGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: ATLRGANSSVLGVGYFRKVSCPF*HAFGLW
Trigger: CCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAAC...TTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp AAAGCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: KATLRGANSSVLGVGYFRVSVNA*DGVSCP
Trigger: AGGGCAAGAAACACCATCGCAAGCGTTCACACTCAC...CCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR GCA 90 bp AAAGCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGTGTAGTGTCTGTAGTTaGTGGGTCTGCTGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: KATLRGANSSVLGVGYFRCSVCS*WVCCFP
Trigger: AGGAAAACAGCAGACCCAGCAACTACAGACACTACA...CCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GAGCAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTGTGGCGGTGCCCCCATaGGTGGAAGCATTGGGGGCA +
Preference number: 5 (lower is better)
Translates to: EQALMLEGEDPALGHPGCVAVPP*VEALGA
Trigger: TGCCCCCAATGCTTCCACCAATGGGGGCACCGCCAC...ACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTGCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 90 bp GCCCGGCTGGCCCAGCATGTTGGCAAAGCGAACGTCAGTGCTGACTaGCGGGTACAGCTCCATCCAGGTGGACATGGAGTGCAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: ARLAQHVGKANVSAD*RVQLHPGGHGVQLP
Trigger: GGGCAGCTGCACTCCATGTCCACCTGGATGGAGCTGTACCCGGCAGTCAGCACTGACGTTCGCTTTGCCAACATGCTGGGCCAGCCGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 90 bp GAGCAGGCACGGCCTGCCTCAGCATGCTTCGAAAGGCAGCTTCTCTaGGCCGCATCCTTCGGGCCTCCTCCTTTTCCCGTTCCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: EQARPASACFERQLL*AASFGPPPFPVPSP
Trigger: GGGAGAGGGAACGGGAAAAGGAGGAGGCCCGAAGGATGCGGCGCAGAGAAGCTGCCTTTCGAAGCATGCTGAGGCAGGCCGTGCCTGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CAGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGGTCTGCTTGGCCTCCTaGGCTCTCAGCCGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: QNTYIGSQGRGSSGGAPGVCLAS*ALSRAS
Trigger: GGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGAC...CCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCAGGTCATCCAGGTCCTaGGGCCGAGTCCACCGGGAC +
Preference number: 5 (lower is better)
Translates to: QTRRRSLRQMLRRPWSHCRSSRS*GRVHRD
Trigger: GTCCCGGTGGACTCGGCCCAAGGACCTGGATGACCT...GCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCAGGTCATCCAGGTCCTaGGGCCGAGTCCACCGGGAC +
Preference number: 5 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLRSSRS*GRVHRD
Trigger: GTCCCGGTGGACTCGGCCCAAGGACCTGGATGACCT...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp TGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCTGAGAACTAGGGGACCCTTGGTCTGCTTGGCCTCCTaGGCTCTCAGCCGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: WSGAEGKDCTSLRTRGPLVCLAS*ALSRAS
Trigger: GGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGAC...CAAGGGTCCCCTAGTTCTCAGACTAGTGCAGTCCTTGCCCTCAGCCCCAGACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTGTCCCATGCTTTCGGCCTTaGGTGTGGAGGTGCTGGCAT +
Preference number: 5 (lower is better)
Translates to: QALMLEGEDPALGHPGCVPCFRP*VWRCWH
Trigger: ATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGG...GACACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGCGACGCCGGAGCTGCTaGGCTTGTTCCTTCTCCTTC +
Preference number: 5 (lower is better)
Translates to: GDPGATASRSPRQKVARGRRRSC*ACSFSF
Trigger: GAAGGAGAAGGAACAAGCCAAGCAGCTCCGGCGTCG...CCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCGGCTGGCCCAGCATGTaGGCAAAGCGAACGTCAGTG +
Preference number: 5 (lower is better)
Translates to: RSLRQMLRRPWSHCLTKSGWPSM*AKRTSV
Trigger: CACTGACGTTCGCTTTGCCAACATGCTGGGCCAGCC...GGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS TCA 90 bp CCTGCAGGAACTCTCGGAAGAGCCGGATCCGCTCCGACTCCAGGGTaGTCTGCTCAAAGGCTGAGTCGCACACAAAGCGCTCACGGACCT +
Preference number: 5 (lower is better)
Translates to: PAGTLGRAGSAPTPG*SAQRLSRTQSAHGP
Trigger: AGGTCCGTGAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCGAGAGTTCCTGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CAA 90 bp CTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCACCATTGGTGGAAGCATaGGGGGCAGTATGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: LRQMLRRPWSHCLTKSKAPLVEA*GAVCQV
Trigger: CACCTGGCATACTGCCCCCAATGCTTCCACCAATGG...TGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCACCATTGGTGGAAGCATaGGGGGCAGTATGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: ASPTPWYRLPISGLGLRAPLVEA*GAVCQV
Trigger: CACCTGGCATACTGCCCCCAATGCTTCCACCAATGG...TGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGGCATCCCCGGCATCATaGGAGGGACCATTCCTGGTA +
Preference number: 5 (lower is better)
Translates to: SPTPWYRLPISGLGLRARASPAS*EGPFLV
Trigger: TACCAGGAATGGTCCCTCCAATGATGCCGGGGATGC...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGGCCGGAGCTGCTTGGCTaGTTCCTTCTCCTTCTTGGC +
Preference number: 5 (lower is better)
Translates to: GDPGATASRSPRQKVARGPELLG*FLLLLG
Trigger: GCCAAGAAGGAGAAGGAACAAGCCAAGCAGCTCCGG...CCCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGCGACGCCGGAGCTGCTaGGCTTGTTCCTTCTCCTTC +
Preference number: 5 (lower is better)
Translates to: LRRPWSHCLTKSKAESSSRRRSC*ACSFSF
Trigger: GAAGGAGAAGGAACAAGCCAAGCAGCTCCGGCGTCG...CGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCGGCTGGCCCAGCATGTaGGCAAAGCGAACGTCAGTG +
Preference number: 5 (lower is better)
Translates to: RTHTSGPRGEEVVVEPQGGWPSM*AKRTSV
Trigger: CACTGACGTTCGCTTTGCCAACATGCTGGGCCAGCC...GCCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTGGCTGGCCCAGCATGTaGGCAAAGCGAACGTCAGTG +
Preference number: 5 (lower is better)
Translates to: DKTKESEADAEATLEPLPGWPSM*AKRTSV
Trigger: CACTGACGTTCGCTTTGCCAACATGCTGGGCCAGCC...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGGTCAGCTTGATGTaGCCTGCGTCCAGCGCAGCA +
Preference number: 5 (lower is better)
Translates to: RRRSLRQMLRRPWSHCLTKVSLM*PASSAA
Trigger: TGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTT...CGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 90 bp GTGGAGGTCATGCGTTCATGCTGTTCCAGGAAATGCTGCAGGGTCTaGTTGGCCTCCTTGGCTCTCAGCCGGGCCTCCTCTTTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: VEVMRSCCSRKCCRV*LASLALSRASSFSS
Trigger: GGAGGAGAAAGAGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCATGAACGCATGACCTCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 90 bp AGGAACTCTCGGAAGAGCCGGATCCGCTCCGACTCCAGGGTGATCTaGTCAAAGGCTGAGTCGCACACAAAGCGCTCACGGACCTCTTCC +
Preference number: 5 (lower is better)
Translates to: RNSRKSRIRSDSRVI*SKAESHTKRSRTSS
Trigger: GGAAGAGGTCCGTGAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCGAGAGTTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CAA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCAGGTCATCCAGGTCCTaGGGCCGAGTCCACCGGGAC +
Preference number: 5 (lower is better)
Translates to: AACLFPGDPFSHYLLASPRSSRS*GRVHRD
Trigger: GTCCCGGTGGACTCGGCCCAAGGACCTGGATGACCT...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTTTGCCTTCTCCCGGTaGCTCCAACTGAGGCCAGAT +
Preference number: 5 (lower is better)
Translates to: RRSLRQMLRRPWSHCLTKFAFSR*LQLRPD
Trigger: ATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCAAA...CTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CAGGCACTGATGCTAGAGGGTGAGGACCCTGCCCTCGGCCACCCAGGCTGTGTCTTGGAAGGGACAGCCTaGTCCCTTAGCAGTTCTTTG +
Preference number: 5 (lower is better)
Translates to: QALMLEGEDPALGHPGCVLEGTA*SLSSSL
Trigger: CAAAGAACTGCTAAGGGACAAGGCTGTCCCTTCCAA...GACACAGCCTGGGTGGCCGAGGGCAGGGTCCTCACCCTCTAGCATCAGTGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CAGAACACATACATCGGGTCCCAGGGGAGAGGAAGTAGTGGTGGAGCCCCAGGGCCGGAGCTGCTTGGCTaGTTCCTTCTCCTTCTTGGC +
Preference number: 5 (lower is better)
Translates to: QNTYIGSQGRGSSGGAPGPELLG*FLLLLG
Trigger: GCCAAGAAGGAGAAGGAACAAGCCAAGCAGCTCCGG...CCCTGGGGCTCCACCACTACTTCCTCTCCCCTGGGACCCGATGTATGTGTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAAGGTCAGCTTGATGTaGCCTGCGTCCAGCGCAGCA +
Preference number: 5 (lower is better)
Translates to: LLASPTPWYRLPISGLGLKVSLM*PASSAA
Trigger: TGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTT...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCTCGTGGCCATGCTTTCGGCCTTaGGTGTGGAGGTGCTGGCAT +
Preference number: 5 (lower is better)
Translates to: RRPWSHCLTKSKAESSSWPCFRP*VWRCWH
Trigger: ATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGG...CCACGAGCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CAA 90 bp GACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGCCATTGGTGGAAGCATaGGGGGCAGTATGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: DTDQTRRRSLRQMLRRPWPLVEA*GAVCQV
Trigger: CACCTGGCATACTGCCCCCAATGCTTCCACCAATGG...CCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCCTTCTCCCGGTTGCTCCAACTGAGGCCAGATCGCTCTGGTTCTGGCTTAGCTGCATCCCCGGCATCATaGGAGGGACCATTCCTGGTA +
Preference number: 5 (lower is better)
Translates to: AFSRLLQLRPDRSGSGLAASPAS*EGPFLV
Trigger: TACCAGGAATGGTCCCTCCAATGATGCCGGGGATGC...AGCTAAGCCAGAACCAGAGCGATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CAA 90 bp CCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAGCATCCCCGGCATCATaGGAGGGACCATTCCTGGTA +
Preference number: 5 (lower is better)
Translates to: PWYRLPISGLGLRARTALASPAS*EGPFLV
Trigger: TACCAGGAATGGTCCCTCCAATGATGCCGGGGATGC...TAGTGCAGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGAGCTCTGCCTTAGACTaGAGTACGCTGGGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: PDKTKESEADAEATLEPLSSALD*STLGFS
Trigger: GGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAGCT...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTAGCTCTGCCTTAGACTaGAGTACGCTGGGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: DKTKESEADAEATLEPLPSSALD*STLGFS
Trigger: GGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAGCT...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp TCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATGTCTGCTTGGCCTCCTaGGCTCTCAGCCGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: SKQPVSFLETPSHTIYWHVCLAS*ALSRAS
Trigger: GGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGAC...ATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp ACTATCTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGTGCTGCAGGGTCTGCTaGGCCTCCTTGGCTCTCAGC +
Preference number: 5 (lower is better)
Translates to: TIYWHHPPRGIDCPSLVWCCRVC*ASLALS
Trigger: GCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCA...CCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAGATAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp TCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGCTATTGAAGGTCAGCTaGATGTTGCCTGCGTCCAGC +
Preference number: 5 (lower is better)
Translates to: SPTPWYRLPISGLGLRARLLKVS*MLPASS
Trigger: GCTGGACGCAGGCAACATCAAGCTGACCTTCAATAG...CCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 90 bp TCCTTCTTGATTCCGAAGCCTGGGGAACGGTTAGGGAGCTCTGCCTaGCGGGGTTCCCTGTCCTGTTCCTGTTCTCTGTCTTCACTCTCC +
Preference number: 5 (lower is better)
Translates to: SFLIPKPGERLGSSA*RGSLSCSCSLSSLS
Trigger: GGAGAGTGAAGACAGAGAACAGGAACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAGAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 90 bp GCCGACTCACTGAGGGTGAGTGTGAACGCTTGCGATGGTGTTTCTTaGCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTGCTGGC +
Preference number: 5 (lower is better)
Translates to: ADSLRVSVNACDGVS*PFCHAFGLWCGGAG
Trigger: GCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134034.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS CCA 90 bp AGGTCATGCGTTCATGCTGTTCCAGGAAATGCTGCAGGGTCTGCTTaGCCTCCTTGGCTCTCAGCCGGGCCTCCTCTTTCTCCTCCTTCT +
Preference number: 5 (lower is better)
Translates to: RSCVHAVPGNAAGSA*PPWLSAGPPLSPPS
Trigger: AGAAGGAGGAGAAAGAGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCATGAACGCATGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp ACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCTTTGCCTTCTCCCGGTaGCTCCAACTGAGGCCAGAT +
Preference number: 5 (lower is better)
Translates to: TDQTRRRSLRQMLRRPWSFAFSR*LQLRPD
Trigger: ATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCAAA...GCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCTTGGAAGGGACAGCCTaGTCCCTTAGCAGTTCTTTG +
Preference number: 5 (lower is better)
Translates to: RSLRQMLRRPWSHCLTKSLEGTA*SLSSSL
Trigger: CAAAGAACTGCTAAGGGACAAGGCTGTCCCTTCCAA...GGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTTGTTCCCATGAAGCATaGGAAGGGACAGCCTTGTCC +
Preference number: 5 (lower is better)
Translates to: DKTKESEADAEATLEPLPCSHEA*EGTALS
Trigger: GGACAAGGCTGTCCCTTCCAATGCTTCATGGGAACA...AGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGTGTTCCCATGAAGCATaGGAAGGGACAGCCTTGTCC +
Preference number: 5 (lower is better)
Translates to: PDKTKESEADAEATLEPLCSHEA*EGTALS
Trigger: GGACAAGGCTGTCCCTTCCAATGCTTCATGGGAACA...CAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AGGCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTTGCTGCAGGGTCTGCTaGGCCTCCTTGGCTCTCAGC +
Preference number: 5 (lower is better)
Translates to: RLCPSSLSLSWRPLLTLSCCRVC*ASLALS
Trigger: GCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCA...AGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCCTATTGAAGGTCAGCTaGATGTTGCCTGCGTCCAGC +
Preference number: 5 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLLLKVS*MLPASS
Trigger: GCTGGACGCAGGCAACATCAAGCTGACCTTCAATAG...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 90 bp ACTCAGAGCCTGAGGGTGAGTGTGAACGCTTGCGATGGTGTTTCTTaGCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTGCTGGC +
Preference number: 5 (lower is better)
Translates to: TQSLRVSVNACDGVS*PFCHAFGLWCGGAG
Trigger: GCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGGCTCTGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
CDS GCA 90 bp CTTCTCCTTCTTGATTCCGAAGCCTGGGGAACGGTTAGGGAGCTCTaGCTGCCGGGGTTCCCTGTCCTGTTCCTGTTCTCTGTCTTCACT +
Preference number: 5 (lower is better)
Translates to: LLLLDSEAWGTVREL*LPGFPVLFLFSVFT
Trigger: AGTGAAGACAGAGAACAGGAACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAGAAGGAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 90 bp CTGACTCAGAGCCCTGCCGACTCACTGAGGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGG +
Preference number: 5 (lower is better)
Translates to: LTQSPADSLRVSVNA*DGVSCPFCHAFGLW
Trigger: CCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGGGCTCTGAGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134034.8
ENSMUST00000145482.8
CDS CCA 90 bp TTGCCTGCGTCCAGCGCAGCAGCCCTCTTGTCAAAGCTTATGACGTaGGCGAAGTCCTCAAATGCTGTGTTCACCTCCACACAGAAGCCC +
Preference number: 5 (lower is better)
Translates to: LPASSAAALLSKLMT*AKSSNAVFTSTQKP
Trigger: GGGCTTCTGTGTGGAGGTGAACACAGCATTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000145482.8
CDS CCA 90 bp TCAGAGCCCTGCCGACTCACTGAGGGTGAGTGTGAACGCTTGCGATaGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGG +
Preference number: 5 (lower is better)
Translates to: SEPCRLTEGECERLR*CFLPFLPCFRPLVW
Trigger: CCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGGGCTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134034.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCGCATCCCCGGCATCATaGGAGGGACCATTCCTGGTA +
Preference number: 5 (lower is better)
Translates to: ACLFPGDPFSHYLLASPTASPAS*EGPFLV
Trigger: TACCAGGAATGGTCCCTCCAATGATGCCGGGGATGC...GGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCCCGGAGCTGCTTGGCTaGTTCCTTCTCCTTCTTGGC +
Preference number: 5 (lower is better)
Translates to: AACLFPGDPFSHYLLASPPELLG*FLLLLG
Trigger: GCCAAGAAGGAGAAGGAACAAGCCAAGCAGCTCCGG...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACCGACGCCGGAGCTGCTaGGCTTGTTCCTTCTCCTTC +
Preference number: 5 (lower is better)
Translates to: AVSKQPVSFLETPSHTIYRRRSC*ACSFSF
Trigger: GAAGGAGAAGGAACAAGCCAAGCAGCTCCGGCGTCG...GTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp ACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACTGCCTCCAAGTGGTTTGGAAGTaGACACTGCTCATCCCATCC +
Preference number: 5 (lower is better)
Translates to: TRRRSLRQMLRRPWSHCLQVVWK*TLLIPS
Trigger: GGATGGGATGAGCAGTGTCAACTTCCAAACCACTTG...GAGGCAGTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGCTGGGACCAAGTGGTTaGGAAGTTGACACTGCTCAT +
Preference number: 5 (lower is better)
Translates to: LLASPTPWYRLPISGLGLLGPSG*EVDTAH
Trigger: ATGAGCAGTGTCAACTTCCAAACCACTTGGTCCCAG...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCCACCTGGGACCAAGTGGTTaGGAAGTTGACACTGCTCAT +
Preference number: 5 (lower is better)
Translates to: DQTRRRSLRQMLRRPWSHLGPSG*EVDTAH
Trigger: ATGAGCAGTGTCAACTTCCAAACCACTTGGTCCCAG...GTGGCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp CCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTTTGCGATGGTGTTTCTaGCCCTTTCTGCCATGCTTT +
Preference number: 5 (lower is better)
Translates to: PTPWYRLPISGLGLRARTLRWCF*PFLPCF
Trigger: AAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAA...AGTCCTTGCCCTCAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 90 bp GCTTCTCCCACACGGATTGCTTATCATCAGCATTGTAGTAGTAGATaGGCCCGTCAGGGGCTACGTGCTCACTCCATAAGGCCCTCGGAG +
Preference number: 5 (lower is better)
Translates to: ASPTRIAYHQHCSSR*ARQGLRAHSIRPSE
Trigger: CTCCGAGGGCCTTATGGAGTGAGCACGTAGCCCCTGACGGGCGCATCTACTACTACAATGCTGATGATAAGCAATCCGTGTGGGAGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000128352.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 90 bp GGTGAGTGTGAACGCTTGCGATGGTGTTTCTTGCCCTTTCTGCCATaGTTTCGGCCTTTGGTGTGGAGGTGCTGGCATTCAGTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: GECERLRWCFLPFLP*FRPLVWRCWHSVCS
Trigger: GGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS GCA 90 bp CCCCCACTTTCAACTGCCGACTCACTGAGGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGG +
Preference number: 5 (lower is better)
Translates to: PPLSTADSLRVSVNA*DGVSCPFCHAFGLW
Trigger: CCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGTTGAAAGTGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8
CDS CCA 90 bp CGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTaGAGGTGCTGGCATTCAGTCTCCAACACCTGCAGGAACTCTCGG +
Preference number: 5 (lower is better)
Translates to: RWCFLPFLPCFRPLV*RCWHSVSNTCRNSR
Trigger: CCGAGAGTTCCTGCAGGTGTTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023745.13
ENSMUST00000145482.8
CDS CCA 90 bp TTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTGCTaGCATTCAGTCTGCTCCAACACCTGCAGGAACTCTCGGAAGAGC +
Preference number: 5 (lower is better)
Translates to: FLPFLPCFRPLVWRC*HSVCSNTCRNSRKS
Trigger: GCTCTTCCGAGAGTTCCTGCAGGTGTTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS CCA 90 bp GCTTGCGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTaGTGTGGAGGTGCTGGCATTCAGTCTGCTCCAACACCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: ACDGVSCPFCHAFGL*CGGAGIQSAPTPAG
Trigger: TCCTGCAGGTGTTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS-3UTR CAA 90 bp GCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCTTTGCCTTCTCCCGGTaGCTCCAACTGAGGCCAGAT +
Preference number: 5 (lower is better)
Translates to: ACLFPGDPFSHYLLASPTFAFSR*LQLRPD
Trigger: ATCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCAAA...GGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCTGTTCCCATGAAGCATaGGAAGGGACAGCCTTGTCC +
Preference number: 5 (lower is better)
Translates to: SGHRPDKTKESEADAEATCSHEA*EGTALS
Trigger: GGACAAGGCTGTCCCTTCCAATGCTTCATGGGAACA...GGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp TGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCCCATGCTTTCGGCCTTaGGTGTGGAGGTGCTGGCAT +
Preference number: 5 (lower is better)
Translates to: CPSSLSLSWRPLLTLSTGPCFRP*VWRCWH
Trigger: ATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGG...GCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AAAGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCATGCTTTCGGCCTTaGGTGTGGAGGTGCTGGCAT +
Preference number: 5 (lower is better)
Translates to: KVDTDQTRRRSLRQMLRRPCFRP*VWRCWH
Trigger: ATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGG...TCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CAA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGTTGCGATGGTGTTTCTaGCCCTTTCTGCCATGCTTT +
Preference number: 5 (lower is better)
Translates to: LLASPTPWYRLPISGLGLLRWCF*PFLPCF
Trigger: AAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAA...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 90 bp TGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTaGTGGCATTCAGTCTCCAACACCTGCAGGAACTCTCGGAAGAGC +
Preference number: 5 (lower is better)
Translates to: CFLPFLPCFRPLVWR*WHSVSNTCRNSRKS
Trigger: GCTCTTCCGAGAGTTCCTGCAGGTGTTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023745.13
ENSMUST00000145482.8
CDS GCA 90 bp GGTGAGTGTGAACGCTTGCGATGGTGTTTCTTGCCCTTTCTGCCATaGTTTCGGCCTTTGGTGTGGAGGTGCTGGCATTCAGTCTCCAAC +
Preference number: 5 (lower is better)
Translates to: GECERLRWCFLPFLP*FRPLVWRCWHSVSN
Trigger: GTTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023745.13
ENSMUST00000145482.8
CDS GCA 90 bp CTGAGGGTGAGTGTGAACGCTTGCGATGGTGTTTCTTGCCCTTTCTaGCATGCTTTCGGCCTTTGGTGTGGAGGTGCTGGCATTCAGTCT +
Preference number: 5 (lower is better)
Translates to: LRVSVNACDGVSCPF*HAFGLWCGGAGIQS
Trigger: AGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 90 bp GCTCCTCTTCATCTGACTCAGAGCCTGAGGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGG +
Preference number: 5 (lower is better)
Translates to: APLHLTQSLRVSVNA*DGVSCPFCHAFGLW
Trigger: CCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGGCTCTGAGTCAGATGAAGAGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
CDS GCA 90 bp TGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTaGTGGCATTCAGTCTGCTCCAACACCTGCAGGAACTCTCGGAAG +
Preference number: 5 (lower is better)
Translates to: CFLPFLPCFRPLVWR*WHSVCSNTCRNSRK
Trigger: CTTCCGAGAGTTCCTGCAGGTGTTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS CCA 90 bp GCTTGCGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTaGTGTGGAGGTGCTGGCATTCAGTCTCCAACACCTGCAGGAACT +
Preference number: 5 (lower is better)
Translates to: ACDGVSCPFCHAFGL*CGGAGIQSPTPAGT
Trigger: AGTTCCTGCAGGTGTTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023745.13
ENSMUST00000145482.8
CDS CCA 90 bp CGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTaGAGGTGCTGGCATTCAGTCTGCTCCAACACCTGCAGGAACTCT +
Preference number: 5 (lower is better)
Translates to: RWCFLPFLPCFRPLV*RCWHSVCSNTCRNS
Trigger: AGAGTTCCTGCAGGTGTTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS-3UTR CAA 90 bp GTCTGTAGTTGCTGGGTCTGCTGTTTTCCTGCAGACTCTTGTTTGACGAGGGCTCCATTGGTGGAAGCATaGGGGGCAGTATGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: VCSCWVCCFPADSCLTRAPLVEA*GAVCQV
Trigger: CACCTGGCATACTGCCCCCAATGCTTCCACCAATGG...AGCCCTCGTCAAACAAGAGTCTGCAGGAAAACAGCAGACCCAGCAACTACAGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS-3UTR CAA 90 bp CTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGGGCTGCTTCTCCCACACGGATaGCTTATCATCAGCATTGTA +
Preference number: 5 (lower is better)
Translates to: LLASPTPWYRLPISGLGLLLPHG*LIISIV
Trigger: TACAATGCTGATGATAAGCAATCCGTGTGGGAGAAG...CAGCCCCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACAGCTCTGCCTTAGACTaGAGTACGCTGGGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: AVSKQPVSFLETPSHTIYSSALD*STLGFS
Trigger: GGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAGCT...GTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AGTGGACACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCTTGGAAGGGACAGCCTaGTCCCTTAGCAGTTCTTTG +
Preference number: 5 (lower is better)
Translates to: SGHRPDKTKESEADAEATLEGTA*SLSSSL
Trigger: CAAAGAACTGCTAAGGGACAAGGCTGTCCCTTCCAA...GGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGTGTCCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp ATGCTGAGGCGACCCTGGAGCCACTGCCTCACGAAGTCCAAGGCAGAAAGTAGCATAAGTGCATCTTCCTaGTCCATGTTCTGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: MLRRPWSHCLTKSKAESSISASS*SMFCSC
Trigger: GCAGCTGCAGAACATGGACAAGGAAGATGCACTTAT...GCTACTTTCTGCCTTGGACTTCGTGAGGCAGTGGCTCCAGGGTCGCCTCAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCCTATTGAAGGTCAGCTaGATGTTGCCTGCGTCCAGC +
Preference number: 5 (lower is better)
Translates to: AACLFPGDPFSHYLLASPLLKVS*MLPASS
Trigger: GCTGGACGCAGGCAACATCAAGCTGACCTTCAATAG...GGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp ACAGACCAGACAAGACGAAGGAGTCTGAGGCAGATGCTGAGGCGACCCTGGAGCTTGCGATGGTGTTTCTaGCCCTTTCTGCCATGCTTT +
Preference number: 5 (lower is better)
Translates to: TDQTRRRSLRQMLRRPWSLRWCF*PFLPCF
Trigger: AAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAA...GCTCCAGGGTCGCCTCAGCATCTGCCTCAGACTCCTTCGTCTTGTCTGGTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 90 bp CTCTGCTTTTTCCAGCAGACTATTGAAGGTCAGCTTGATGTTGCCTaGGTCCAGCGCAGCAGCCCTCTTGTCAAAGCTTATGACGTGGGC +
Preference number: 5 (lower is better)
Translates to: LCFFQQTIEGQLDVA*VQRSSPLVKAYDVG
Trigger: GCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAAAAAGCAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CCA 90 bp TCTTCATCTGACTCAGAGCCTGAGGGTGAGTGTGAACGCTTGCGATaGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGG +
Preference number: 5 (lower is better)
Translates to: SSSDSEPEGECERLR*CFLPFLPCFRPLVW
Trigger: CCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGGCTCTGAGTCAGATGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
CDS CCA 90 bp ACTTTCAACTGCCGACTCACTGAGGGTGAGTGTGAACGCTTGCGATaGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGG +
Preference number: 5 (lower is better)
Translates to: TFNCRLTEGECERLR*CFLPFLPCFRPLVW
Trigger: CCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGTTGAAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8
CDS-3UTR CAA 90 bp CTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCCGTGGTACAAGTGGTTTGGAAGTaGACACTGCTCATCCCATCC +
Preference number: 5 (lower is better)
Translates to: LSWRPLLTLSTGITHPVVQVVWK*TLLIPS
Trigger: GGATGGGATGAGCAGTGTCAACTTCCAAACCACTTG...TACCACGGGGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCACCCACCCTGGGACCAAGTGGTTaGGAAGTTGACACTGCTCAT +
Preference number: 5 (lower is better)
Translates to: ACLFPGDPFSHYLLASPTLGPSG*EVDTAH
Trigger: ATGAGCAGTGTCAACTTCCAAACCACTTGGTCCCAG...GGTGGGTGATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp ACCCAGGCTGTGTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTCTTCTCCCACACGGATaGCTTATCATCAGCATTGTA +
Preference number: 5 (lower is better)
Translates to: TQAVSKQPVSFLETPSHTLLPHG*LIISIV
Trigger: TACAATGCTGATGATAAGCAATCCGTGTGGGAGAAG...AGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGACACAGCCTGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAACCATGCTTTCGGCCTTaGGTGTGGAGGTGCTGGCAT +
Preference number: 5 (lower is better)
Translates to: ATLRGANSSVLGVGYFRKPCFRP*VWRCWH
Trigger: ATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGG...TTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS-3UTR CAA 90 bp ACTATCTACTGGCATCACCCACCCCGTGGTATAGACTGCCCATCTCTGGTCTGGTTGCGATGGTGTTTCTaGCCCTTTCTGCCATGCTTT +
Preference number: 5 (lower is better)
Translates to: TIYWHHPPRGIDCPSLVWLRWCF*PFLPCF
Trigger: AAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAA...CCAGACCAGAGATGGGCAGTCTATACCACGGGGTGGGTGATGCCAGTAGATAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 90 bp CTCCTCTCTCTCCAAAGCCCGGATATGCTCCTCAAAGCAGATAAGTaGATCTTCCTTGTCCATGTTCTGCAGCTGCTGGTCCTGAGCAAA +
Preference number: 5 (lower is better)
Translates to: LLSLQSPDMLLKADK*IFLVHVLQLLVLSK
Trigger: TTTGCTCAGGACCAGCAGCTGCAGAACATGGACAAGGAAGATGCACTTATCTGCTTTGAGGAGCATATCCGGGCTTTGGAGAGAGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CCA 90 bp TTGCCTGCGTCCAGCGCAGCAGCCCTCTTGTCAAAGCTTATGACGTaGGCGAAGTCCTCAAATGCTGTGTTCACCTTAAGGATATCCTTT +
Preference number: 5 (lower is better)
Translates to: LPASSAAALLSKLMT*AKSSNAVFTLRISF
Trigger: AAAGGATATCCTTAAGGTGAACACAGCATTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136980.8
CDS-3UTR CAA 90 bp GTCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCAATAAGTGCATCTTCCTaGTCCATGTTCTGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: VQAACLFPGDPFSHYLLAISASS*SMFCSC
Trigger: GCAGCTGCAGAACATGGACAAGGAAGATGCACTTAT...TGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp ACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAAAGTAAGGTCAGCTTGATGTaGCCTGCGTCCAGCGCAGCA +
Preference number: 5 (lower is better)
Translates to: TLRGANSSVLGVGYFRKSKVSLM*PASSAA
Trigger: TGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTT...ACTTTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp TCCAAGCAGCCTGTCTCTTTCCTGGAGACCCCTTCTCACACTATCTACTGGCATCTTCTCCCACACGGATaGCTTATCATCAGCATTGTA +
Preference number: 5 (lower is better)
Translates to: SKQPVSFLETPSHTIYWHLLPHG*LIISIV
Trigger: TACAATGCTGATGATAAGCAATCCGTGTGGGAGAAG...ATGCCAGTAGATAGTGTGAGAAGGGGTCTCCAGGAAAGAGACAGGCTGCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AAAGCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGCAAGTGGTTTGGAAGTaGACACTGCTCATCCCATCC +
Preference number: 5 (lower is better)
Translates to: KATLRGANSSVLGVGYFRQVVWK*TLLIPS
Trigger: GGATGGGATGAGCAGTGTCAACTTCCAAACCACTTG...CCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp AAAGCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGATAAGTGCATCTTCCTaGTCCATGTTCTGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: KATLRGANSSVLGVGYFRISASS*SMFCSC
Trigger: GCAGCTGCAGAACATGGACAAGGAAGATGCACTTAT...CCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS-3UTR CAA 90 bp GCAACCTTGAGAGGTGCTAACAGTAGTGTGTTGGGGGTGGGTTACTTTAGGAAATTGCGATGGTGTTTCTaGCCCTTTCTGCCATGCTTT +
Preference number: 5 (lower is better)
Translates to: ATLRGANSSVLGVGYFRKLRWCF*PFLPCF
Trigger: AAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAA...TTTCCTAAAGTAACCCACCCCCAACACACTACTGTTAGCACCTCTCAAGGTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS CCA 72 bp CGCACCCGGAGCCGTCGCTGCAGTGACAGGCACCGCTaGCATCAGCATCCCCGGCATCATTGGAGGGACCAT +
Preference number: 6 (lower is better)
Translates to: RTRSRRCSDRHR*HQHPRHHWRDH
Trigger: ATGGTCCCTCCAATGATGCCGGGGATGCTGATGCCAGCGGTGCCTGTCACTGCAGCGACGGCTCCGGGTGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000128352.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 72 bp CGGCCTGCCTCAGCATGCTTCGAAAGGCAGCTTCTCTaGGCCGCATCCTTCGGGCCTCCTCCTTTTCCCGTT +
Preference number: 6 (lower is better)
Translates to: RPASACFERQLL*AASFGPPPFPV
Trigger: AACGGGAAAAGGAGGAGGCCCGAAGGATGCGGCGCAGAGAAGCTGCCTTTCGAAGCATGCTGAGGCAGGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 72 bp CGGAAGAGCCGGATCCGCTCCGACTCCAGGGTGATCTaGTCAAAGGCTGAGTCGCACACAAAGCGCTCACGG +
Preference number: 6 (lower is better)
Translates to: RKSRIRSDSRVI*SKAESHTKRSR
Trigger: CCGTGAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS CCA 72 bp TTCCAGCCACAGCAGCGCTGCAGTGACAGGCACCGCTaGCATCAGCATCCCCGGCATCATTGGAGGGACCAT +
Preference number: 6 (lower is better)
Translates to: FQPQQRCSDRHR*HQHPRHHWRDH
Trigger: ATGGTCCCTCCAATGATGCCGGGGATGCTGATGCCAGCGGTGCCTGTCACTGCAGCGCTGCTGTGGCTGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140806.8
CDS TCA 72 bp GCTGGCCCAGCATGTTGGCAAAGCGAACGTCAGTGCTaGCTGCCGGGTACAGCTCCATCCAGGTGGACATGG +
Preference number: 6 (lower is better)
Translates to: AGPACWQSERQC*LPGTAPSRWTW
Trigger: CCATGTCCACCTGGATGGAGCTGTACCCGGCAGTCAGCACTGACGTTCGCTTTGCCAACATGCTGGGCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 72 bp ACTGCCGGGTACAGCTCCATCCAGGTGGACATGGAGTaGAGCTGCCCTGTCTCATGCAGCTCGTCCAGGAAG +
Preference number: 6 (lower is better)
Translates to: TAGYSSIQVDME*SCPVSCSSSRK
Trigger: CTTCCTGGACGAGCTGCATGAGACAGGGCAGCTGCACTCCATGTCCACCTGGATGGAGCTGTACCCGGCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS TCA 72 bp GATCCGCTCCGACTCCAGGGTGATCTGCTCAAAGGCTaGGTCGCACACAAAGCGCTCACGGACCTCTTCCCA +
Preference number: 6 (lower is better)
Translates to: DPLRLQGDLLKG*VAHKALTDLFP
Trigger: TGGGAAGAGGTCCGTGAGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS TCA 72 bp ACTCTCGGAAGAGCCGGATCCGCTCCGACTCCAGGGTaGTCTGCTCAAAGGCTGAGTCGCACACAAAGCGCT +
Preference number: 6 (lower is better)
Translates to: TLGRAGSAPTPG*SAQRLSRTQSA
Trigger: AGCGCTTTGTGTGCGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCGAGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 72 bp GCCCAGCATGTTGGCAAAGCGAACGTCAGTGCTGACTaGCGGGTACAGCTCCATCCAGGTGGACATGGAGTG +
Preference number: 6 (lower is better)
Translates to: AQHVGKANVSAD*RVQLHPGGHGV
Trigger: CACTCCATGTCCACCTGGATGGAGCTGTACCCGGCAGTCAGCACTGACGTTCGCTTTGCCAACATGCTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 72 bp ATTCCGAAGCCTGGGGAACGGTTAGGGAGCTCTGCCTaGCGGGGTTCCCTGTCCTGTTCCTGTTCTCTGTCT +
Preference number: 6 (lower is better)
Translates to: IPKPGERLGSSA*RGSLSCSCSLS
Trigger: AGACAGAGAACAGGAACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGTTCCCCAGGCTTCGGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 72 bp CTTGATTCCGAAGCCTGGGGAACGGTTAGGGAGCTCTaGCTGCCGGGGTTCCCTGTCCTGTTCCTGTTCTCT +
Preference number: 6 (lower is better)
Translates to: LDSEAWGTVREL*LPGFPVLFLFS
Trigger: AGAGAACAGGAACAGGACAGGGAACCCCGGCAGGCAGAGCTCCCTAACCGTTCCCCAGGCTTCGGAATCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS CCA 72 bp TGGTATCTGTGTAAGTGGTGGCGGTGCCCCCATTGGTaGAAGCATTGGGGGCAGTATGCCAGGTGGCATGGG +
Preference number: 6 (lower is better)
Translates to: WYLCKWWRCPHW*KHWGQYARWHG
Trigger: CCCATGCCACCTGGCATACTGCCCCCAATGCTTCCACCAATGGGGGCACCGCCACCACTTACACAGATACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000128352.8
ENSMUST00000136980.8
ENSMUST00000140806.8
ENSMUST00000145482.8
CDS CAA 72 bp CGTTCATGCTGTTCCAGGAAATGCTGCAGGGTCTGCTaGGCCTCCTTGGCTCTCAGCCGGGCCTCCTCTTTC +
Preference number: 6 (lower is better)
Translates to: RSCCSRKCCRVC*ASLALSRASSF
Trigger: GAAAGAGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCATGAACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 72 bp AAGTCCAAAGGAGTAGAGCCCGGCTGGCCCAGCATGTaGGCAAAGCGAACGTCAGTGCTGACTGCCGGGTAC +
Preference number: 6 (lower is better)
Translates to: KSKGVEPGWPSM*AKRTSVLTAGY
Trigger: GTACCCGGCAGTCAGCACTGACGTTCGCTTTGCCAACATGCTGGGCCAGCCGGGCTCTACTCCTTTGGACTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 90 bp GAGGTCATGCGTTCATGCTGTTCCAGGAAATGCTGCAGGGTCTGCTaGGCCTCCTTGGCTCTCAGCCGGGCCTCCTCTTTCTCCTCCTTC +
Preference number: 6 (lower is better)
Translates to: EVMRSCCSRKCCRVC*ASLALSRASSFSSF
Trigger: GAAGGAGGAGAAAGAGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCATGAACGCATGACCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 72 bp AGGGACCATTCCTGGTATCTGTGTAAGTGGTGGCGGTaGCCCCATTGGTGGAAGCATTGGGGGCAGTATGCC +
Preference number: 6 (lower is better)
Translates to: RDHSWYLCKWWR*PHWWKHWGQYA
Trigger: GGCATACTGCCCCCAATGCTTCCACCAATGGGGGCACCGCCACCACTTACACAGATACCAGGAATGGTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000128352.8
ENSMUST00000136980.8
ENSMUST00000140806.8
ENSMUST00000145482.8
CDS GCA 72 bp GTGGTGGAGGTCATGCGTTCATGCTGTTCCAGGAAATaGTGCAGGGTCTGCTTGGCCTCCTTGGCTCTCAGC +
Preference number: 6 (lower is better)
Translates to: VVEVMRSCCSRK*CRVCLASLALS
Trigger: GCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCATGAACGCATGACCTCCACCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CCA 72 bp TCCTGGTATCTGTGTAAGTGGTGGCGGTGCCCCCATTaGTGGAAGCATTGGGGGCAGTATGCCAGGTGGCAT +
Preference number: 6 (lower is better)
Translates to: SWYLCKWWRCPH*WKHWGQYARWH
Trigger: ATGCCACCTGGCATACTGCCCCCAATGCTTCCACCAATGGGGGCACCGCCACCACTTACACAGATACCAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000128352.8
ENSMUST00000136980.8
ENSMUST00000140806.8
ENSMUST00000145482.8
CDS CCA 72 bp CATCAGCATCCCCGGCATCATTGGAGGGACCATTCCTaGTATCTGTGTAAGTGGTGGCGGTGCCCCCATTGG +
Preference number: 6 (lower is better)
Translates to: HQHPRHHWRDHS*YLCKWWRCPHW
Trigger: CCAATGGGGGCACCGCCACCACTTACACAGATACCAGGAATGGTCCCTCCAATGATGCCGGGGATGCTGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000128352.8
ENSMUST00000136980.8
ENSMUST00000140806.8
ENSMUST00000145482.8
CDS CCA 72 bp GACAGGCACCGCTGGCATCAGCATCCCCGGCATCATTaGAGGGACCATTCCTGGTATCTGTGTAAGTGGTGG +
Preference number: 6 (lower is better)
Translates to: DRHRWHQHPRHH*RDHSWYLCKWW
Trigger: CCACCACTTACACAGATACCAGGAATGGTCCCTCCAATGATGCCGGGGATGCTGATGCCAGCGGTGCCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000128352.8
ENSMUST00000136980.8
ENSMUST00000140806.8
ENSMUST00000145482.8
CDS CCA 72 bp GTTCATGCTGTTCCAGGAAATGCTGCAGGGTCTGCTTaGCCTCCTTGGCTCTCAGCCGGGCCTCCTCTTTCT +
Preference number: 6 (lower is better)
Translates to: VHAVPGNAAGSA*PPWLSAGPPLS
Trigger: AGAAAGAGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCATGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CCA 72 bp ACACTGCTCATCCCATCCAGGATGCTCTTCAGGGCCTaGATATTCCGACGCCGGAGCTGCTTGGCTTGTTCC +
Preference number: 6 (lower is better)
Translates to: TLLIPSRMLFRA*IFRRRSCLACS
Trigger: GGAACAAGCCAAGCAGCTCCGGCGTCGGAATATCCAGGCCCTGAAGAGCATCCTGGATGGGATGAGCAGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 90 bp AACTTGAACAAGTCCAAAGGAGTAGAGCCCGGCTGGCCCAGCATGTaGGCAAAGCGAACGTCAGTGCTGACTGCCGGGTACAGCTCCATC +
Preference number: 6 (lower is better)
Translates to: NLNKSKGVEPGWPSM*AKRTSVLTAGYSSI
Trigger: GATGGAGCTGTACCCGGCAGTCAGCACTGACGTTCGCTTTGCCAACATGCTGGGCCAGCCGGGCTCTACTCCTTTGGACTTGTTCAAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 90 bp TTTTCCCGTTCCCTCTCCCGTGCCTCTGCTTTTTCCAGCAGACTATaGAAGGTCAGCTTGATGTTGCCTGCGTCCAGCGCAGCAGCCCTC +
Preference number: 6 (lower is better)
Translates to: FSRSLSRASAFSSRL*KVSLMLPASSAAAL
Trigger: GAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAAAAAGCAGAGGCACGGGAGAGGGAACGGGAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 90 bp GACTCAGAGCCTGAGGGTGAGTGTGAACGCTTGCGATGGTGTTTCTaGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTGCTGG +
Preference number: 6 (lower is better)
Translates to: DSEPEGECERLRWCF*PFLPCFRPLVWRCW
Trigger: CCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGGCTCTGAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
CDS CAA 90 bp CGCTTGCGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTaGGTGTGGAGGTGCTGGCATTCAGTCTGCTCCAACACCTGCAGG +
Preference number: 6 (lower is better)
Translates to: RLRWCFLPFLPCFRP*VWRCWHSVCSNTCR
Trigger: CCTGCAGGTGTTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS CAA 90 bp TGCCGACTCACTGAGGGTGAGTGTGAACGCTTGCGATGGTGTTTCTaGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTGCTGG +
Preference number: 6 (lower is better)
Translates to: CRLTEGECERLRWCF*PFLPCFRPLVWRCW
Trigger: CCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134034.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 72 bp CCTTCGGGCCTCCTCCTTTTCCCGTTCCCTCTCCCGTaGCTCTGCTTTTTCCAGCAGACTATTGAAGGTCAG +
Preference number: 6 (lower is better)
Translates to: PSGLLLFPFPLP*LCFFQQTIEGQ
Trigger: CTGACCTTCAATAGTCTGCTGGAAAAAGCAGAGGCACGGGAGAGGGAACGGGAAAAGGAGGAGGCCCGAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 72 bp CCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTaGTGGCATTCAGTCTGCTCCAACACCTGCAGGAAC +
Preference number: 6 (lower is better)
Translates to: PFLPCFRPLVWR*WHSVCSNTCRN
Trigger: GTTCCTGCAGGTGTTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS CAA 90 bp CGCTTGCGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTaGGTGTGGAGGTGCTGGCATTCAGTCTCCAACACCTGCAGGAAC +
Preference number: 6 (lower is better)
Translates to: RLRWCFLPFLPCFRP*VWRCWHSVSNTCRN
Trigger: GTTCCTGCAGGTGTTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023745.13
ENSMUST00000145482.8
CDS CAA 90 bp TCTGACTCAGAGCCCTGCCGACTCACTGAGGGTGAGTGTGAACGCTaGCGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTG +
Preference number: 6 (lower is better)
Translates to: SDSEPCRLTEGECER*RWCFLPFLPCFRPL
Trigger: CAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGGGCTCTGAGTCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134034.8
ENSMUST00000145482.8
CDS TCA 72 bp CTGCGTCCAGCGCAGCAGCCCTCTTGTCAAAGCTTATaGCGTGGGCGAAGTCCTCAAATGCTGTGTTCACCT +
Preference number: 6 (lower is better)
Translates to: LRPAQQPSCQSL*RGRSPQMLCSP
Trigger: AGGTGAACACAGCATTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 72 bp CCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTaGTGGCATTCAGTCTCCAACACCTGCAGGAACTCT +
Preference number: 6 (lower is better)
Translates to: PFLPCFRPLVWR*WHSVSNTCRNS
Trigger: AGAGTTCCTGCAGGTGTTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023745.13
ENSMUST00000145482.8
CDS GCA 72 bp AGTGTGAACGCTTGCGATGGTGTTTCTTGCCCTTTCTaGCATGCTTTCGGCCTTTGGTGTGGAGGTGCTGGC +
Preference number: 6 (lower is better)
Translates to: SVNACDGVSCPF*HAFGLWCGGAG
Trigger: GCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 72 bp AGCCCTGCCGACTCACTGAGGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTC +
Preference number: 6 (lower is better)
Translates to: SPADSLRVSVNA*DGVSCPFCHAF
Trigger: GAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134034.8
ENSMUST00000145482.8
CDS CCA 72 bp TTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTGCTaGCATTCAGTCTCCAACACCTGCAGGAACTCTCGG +
Preference number: 6 (lower is better)
Translates to: FLPCFRPLVWRC*HSVSNTCRNSR
Trigger: CCGAGAGTTCCTGCAGGTGTTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023745.13
ENSMUST00000145482.8
CDS CCA 72 bp GACTCAGAGCCTGAGGGTGAGTGTGAACGCTTGCGATaGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCT +
Preference number: 6 (lower is better)
Translates to: DSEPEGECERLR*CFLPFLPCFRP
Trigger: AGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGGCTCTGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
CDS CCA 72 bp TGCCGACTCACTGAGGGTGAGTGTGAACGCTTGCGATaGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCT +
Preference number: 6 (lower is better)
Translates to: CRLTEGECERLR*CFLPFLPCFRP
Trigger: AGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134034.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS CAA 72 bp GCCTCTGCTTTTTCCAGCAGACTATTGAAGGTCAGCTaGATGTTGCCTGCGTCCAGCGCAGCAGCCCTCTTG +
Preference number: 6 (lower is better)
Translates to: ASAFSSRLLKVS*MLPASSAAALL
Trigger: CAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAAAAAGCAGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 72 bp TCCCTCTCCCGTGCCTCTGCTTTTTCCAGCAGACTATaGAAGGTCAGCTTGATGTTGCCTGCGTCCAGCGCA +
Preference number: 6 (lower is better)
Translates to: SLSRASAFSSRL*KVSLMLPASSA
Trigger: TGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAAAAAGCAGAGGCACGGGAGAGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 72 bp CCTGAGGGTGAGTGTGAACGCTTGCGATGGTGTTTCTaGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGG +
Preference number: 6 (lower is better)
Translates to: PEGECERLRWCF*PFLPCFRPLVW
Trigger: CCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
CDS CAA 72 bp GAGCCCTGCCGACTCACTGAGGGTGAGTGTGAACGCTaGCGATGGTGTTTCTTGCCCTTTCTGCCATGCTTT +
Preference number: 6 (lower is better)
Translates to: EPCRLTEGECER*RWCFLPFLPCF
Trigger: AAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134034.8
ENSMUST00000145482.8
CDS CAA 90 bp CAGCTCTGCCTTAGACTTGAGTACGCTGGGCTTCTCCCACACGGATaGCTTATCATCAGCATTGTAGTAGTAGATGCGCCCGTCAGGGGC +
Preference number: 6 (lower is better)
Translates to: QLCLRLEYAGLLPHG*LIISIVVVDAPVRG
Trigger: GCCCCTGACGGGCGCATCTACTACTACAATGCTGATGATAAGCAATCCGTGTGGGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000128352.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 90 bp CTCTCCCGTGCCTCTGCTTTTTCCAGCAGACTATTGAAGGTCAGCTaGATGTTGCCTGCGTCCAGCGCAGCAGCCCTCTTGTCAAAGCTT +
Preference number: 6 (lower is better)
Translates to: LSRASAFSSRLLKVS*MLPASSAAALLSKL
Trigger: AAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAAAAAGCAGAGGCACGGGAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 90 bp ACCCCCACTTTCAACTGCCGACTCACTGAGGGTGAGTGTGAACGCTaGCGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTTG +
Preference number: 6 (lower is better)
Translates to: TPTFNCRLTEGECER*RWCFLPFLPCFRPL
Trigger: CAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGTTGAAAGTGGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8
CDS TCA 72 bp GCATCTTCCTTGTCCATGTTCTGCAGCTGCTGGTCCTaGGCAAAGCTGGGGTTATCCATGAGGTACTGCTGG +
Preference number: 6 (lower is better)
Translates to: ASSLSMFCSCWS*AKLGLSMRYCW
Trigger: CCAGCAGTACCTCATGGATAACCCCAGCTTTGCTCAGGACCAGCAGCTGCAGAACATGGACAAGGAAGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 72 bp GAACGCTTGCGATGGTGTTTCTTGCCCTTTCTGCCATaGTTTCGGCCTTTGGTGTGGAGGTGCTGGCATTCA +
Preference number: 6 (lower is better)
Translates to: ERLRWCFLPFLP*FRPLVWRCWHS
Trigger: TGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS CCA 72 bp TCCAGCGCAGCAGCCCTCTTGTCAAAGCTTATGACGTaGGCGAAGTCCTCAAATGCTGTGTTCACCTCCACA +
Preference number: 6 (lower is better)
Translates to: SSAAALLSKLMT*AKSSNAVFTST
Trigger: TGTGGAGGTGAACACAGCATTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000145482.8
CDS CCA 72 bp TTTCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTGCTaGCATTCAGTCTGCTCCAACACCTGCAGGAACTCT +
Preference number: 6 (lower is better)
Translates to: FLPCFRPLVWRC*HSVCSNTCRNS
Trigger: AGAGTTCCTGCAGGTGTTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS CAA 72 bp TGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTaGGTGTGGAGGTGCTGGCATTCAGTCTCCAACACC +
Preference number: 6 (lower is better)
Translates to: WCFLPFLPCFRP*VWRCWHSVSNT
Trigger: GGTGTTGGAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023745.13
ENSMUST00000145482.8
CDS CAA 72 bp TGGTGTTTCTTGCCCTTTCTGCCATGCTTTCGGCCTTaGGTGTGGAGGTGCTGGCATTCAGTCTGCTCCAAC +
Preference number: 6 (lower is better)
Translates to: WCFLPFLPCFRP*VWRCWHSVCSN
Trigger: GTTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000118287.9
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000150636.8
CDS CAA 72 bp ACTGAGGGTGAGTGTGAACGCTTGCGATGGTGTTTCTaGCCCTTTCTGCCATGCTTTCGGCCTTTGGTGTGG +
Preference number: 6 (lower is better)
Translates to: TEGECERLRWCF*PFLPCFRPLVW
Trigger: CCACACCAAAGGCCGAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134034.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS CAA 90 bp CGTGCCTCTGCTTTTTCCAGCAGACTATTGAAGGTCAGCTTGATGTaGCCTGCGTCCAGCGCAGCAGCCCTCTTGTCAAAGCTTATGACG +
Preference number: 6 (lower is better)
Translates to: RASAFSSRLLKVSLM*PASSAAALLSKLMT
Trigger: CGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAAAAAGCAGAGGCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 90 bp TCCCTGTCCTGTTCCTGTTCTCTGTCTTCACTCTCCTTACCAGCTTaGTCTTCGGGGTCCGTCTCACTGTCAGGACTGGTCGACTTGTGT +
Preference number: 6 (lower is better)
Translates to: SLSCSCSLSSLSLPA*SSGSVSLSGLVDLC
Trigger: ACACAAGTCGACCAGTCCTGACAGTGAGACGGACCCCGAAGACAAAGCTGGTAAGGAGAGTGAAGACAGAGAACAGGAACAGGACAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 72 bp CATCTGACTCAGAGCCTGAGGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTC +
Preference number: 6 (lower is better)
Translates to: HLTQSLRVSVNA*DGVSCPFCHAF
Trigger: GAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGGCTCTGAGTCAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
CDS GCA 72 bp TCAACTGCCGACTCACTGAGGGTGAGTGTGAACGCTTaGGATGGTGTTTCTTGCCCTTTCTGCCATGCTTTC +
Preference number: 6 (lower is better)
Translates to: STADSLRVSVNA*DGVSCPFCHAF
Trigger: GAAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8
CDS CAA 72 bp GCTTTTTCCAGCAGACTATTGAAGGTCAGCTTGATGTaGCCTGCGTCCAGCGCAGCAGCCCTCTTGTCAAAG +
Preference number: 6 (lower is better)
Translates to: AFSSRLLKVSLM*PASSAAALLSK
Trigger: CTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAAAAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 72 bp TGTTCCTGTTCTCTGTCTTCACTCTCCTTACCAGCTTaGTCTTCGGGGTCCGTCTCACTGTCAGGACTGGTC +
Preference number: 6 (lower is better)
Translates to: CSCSLSSLSLPA*SSGSVSLSGLV
Trigger: GACCAGTCCTGACAGTGAGACGGACCCCGAAGACAAAGCTGGTAAGGAGAGTGAAGACAGAGAACAGGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000126955.2
ENSMUST00000134034.8
ENSMUST00000136980.8
ENSMUST00000145482.8
ENSMUST00000150636.8
CDS GCA 72 bp ACACGGATTGCTTATCATCAGCATTGTAGTAGTAGATaGGCCCGTCAGGGGCTACGTGCTCACTCCATAAGG +
Preference number: 6 (lower is better)
Translates to: TRIAYHQHCSSR*ARQGLRAHSIR
Trigger: CCTTATGGAGTGAGCACGTAGCCCCTGACGGGCGCATCTACTACTACAATGCTGATGATAAGCAATCCGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000128352.8
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS GCA 72 bp TTCCAGCAGACTATTGAAGGTCAGCTTGATGTTGCCTaGGTCCAGCGCAGCAGCCCTCTTGTCAAAGCTTAT +
Preference number: 6 (lower is better)
Translates to: FQQTIEGQLDVA*VQRSSPLVKAY
Trigger: ATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
ENSMUST00000145482.8
CDS CAA 72 bp TCATCTGACTCAGAGCCTGAGGGTGAGTGTGAACGCTaGCGATGGTGTTTCTTGCCCTTTCTGCCATGCTTT +
Preference number: 6 (lower is better)
Translates to: SSDSEPEGECER*RWCFLPFLPCF
Trigger: AAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGGCTCTGAGTCAGATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023745.13
ENSMUST00000118287.9
ENSMUST00000136980.8
CDS CAA 72 bp TTCAACTGCCGACTCACTGAGGGTGAGTGTGAACGCTaGCGATGGTGTTTCTTGCCCTTTCTGCCATGCTTT +
Preference number: 6 (lower is better)
Translates to: FNCRLTEGECER*RWCFLPFLPCF
Trigger: AAAGCATGGCAGAAAGGGCAAGAAACACCATCGCAAGCGTTCACACTCACCCTCAGTGAGTCGGCAGTTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150636.8