Pregenerated sensors for PRPF39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035597Ensembl transcript IDs: ENSMUST00000120580.8, ENSMUST00000129956.2, ENSMUST00000223341.2
Found 136 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACGTGCAGAGTCTTGATCTTCAAAGCGCAGCAGTCCCTGCATTCTaGCCGGGTTGTGTGGGCAGGCTTTGGGTTACAGACCATAGGGCA | + |
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Preference number: 1 (lower is better) Translates to: HVQSLDLQSAAVPAF*PGCVGRLWVTDHRA Trigger: TGCCCTATGGTCTGTAACCCAAAGCCTGCCCACACAACCCGGTCAGAATGCAGGGACTGCTGCGCTTTGAAGATCAAGACTCTGCACGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR CCA 90 bp | TTGATCTTCAAAGCGCAGCAGTCCCTGCATTCTGACCGGGTTGTGTaGGCAGGCTTTGGGTTACAGACCATAGGGCACAGACCCATTAGA | + |
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Preference number: 1 (lower is better) Translates to: LIFKAQQSLHSDRVV*AGFGLQTIGHRPIR Trigger: TCTAATGGGTCTGTGCCCTATGGTCTGTAACCCAAAGCCTGCCCACACAACCCGGTCAGAATGCAGGGACTGCTGCGCTTTGAAGATCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR GCA 90 bp | TTGGGTGGAGGTTGGATAGAACATGGCAATGTTCTGATCCCCACGTaGAGAGTCTTGATCTTCAAAGCGCAGCAGTCCCTGCATTCTGAC | + |
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Preference number: 1 (lower is better) Translates to: LGGGWIEHGNVLIPT*RVLIFKAQQSLHSD Trigger: GTCAGAATGCAGGGACTGCTGCGCTTTGAAGATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCCACCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR CCA 90 bp | TGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTaGGATTTAAAACTGCACCACCAAGCACACCTAAACTTGTCTTAT | + |
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Preference number: 1 (lower is better) Translates to: CADQLSSGPPLPSEC*DLKLHHQAHLNLSY Trigger: ATAAGACAAGTTTAGGTGTGCTTGGTGGTGCAGTTTTAAATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR CCA 90 bp | GAAGCCCCCGTCGATAAACCATTTGGGTGGAGGTTGGATAGAACATaGCAATGTTCTGATCCCCACGTGCAGAGTCTTGATCTTCAAAGC | + |
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Preference number: 1 (lower is better) Translates to: EAPVDKPFGWRLDRT*QCSDPHVQSLDLQS Trigger: GCTTTGAAGATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCCACCCAAATGGTTTATCGACGGGGGCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR TCA 90 bp | TCAAAAGCTGCCCAAAGCATGTGTGCCATGGGTTTCTTTGGGAGGTaGACAGTACAAGCTCTGCTGAAGACATGCCTCACTCCTTCAATG | + |
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Preference number: 1 (lower is better) Translates to: SKAAQSMCAMGFFGR*TVQALLKTCLTPSM Trigger: CATTGAAGGAGTGAGGCATGTCTTCAGCAGAGCTTGTACTGTTCACCTCCCAAAGAAACCCATGGCACACATGCTTTGGGCAGCTTTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR GCA 90 bp | CATTGCCAATCCCTGTTGTTCCTCAAAAGCTGCCCAAAGCATGTGTaGCATGGGTTTCTTTGGGAGGTGAACAGTACAAGCTCTGCTGAA | + |
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Preference number: 1 (lower is better) Translates to: HCQSLLFLKSCPKHV*HGFLWEVNSTSSAE Trigger: TTCAGCAGAGCTTGTACTGTTCACCTCCCAAAGAAACCCATGGCACACATGCTTTGGGCAGCTTTTGAGGAACAACAGGGATTGGCAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR CCA 90 bp | ACTAGACTAGTTTCTGTAAGGAAGGACGAAGAGAGGCAACGAGGTTaGCATATGCAGCAGTCAAATCTGGTTGCAAGCAGACCATCTCCT | + |
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Preference number: 1 (lower is better) Translates to: TRLVSVRKDEERQRG*HMQQSNLVASRPSP Trigger: AGGAGATGGTCTGCTTGCAACCAGATTTGACTGCTGCATATGCCAACCTCGTTGCCTCTCTTCGTCCTTCCTTACAGAAACTAGTCTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR TCA 90 bp | TGTGTGCCATGGGTTTCTTTGGGAGGTGAACAGTACAAGCTCTGCTaGAGACATGCCTCACTCCTTCAATGCTATGGTTTTCCATGTACT | + |
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Preference number: 1 (lower is better) Translates to: CVPWVSLGGEQYKLC*RHASLLQCYGFPCT Trigger: AGTACATGGAAAACCATAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAGCTTGTACTGTTCACCTCCCAAAGAAACCCATGGCACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR GCA 90 bp | CAAGAAGTTTATATAATGTATCCAAAGATCAACACTAAGAGGTATTaGCTGAAGCCCCCGTCGATAAACCATTTGGGTGGAGGTTGGATA | + |
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Preference number: 1 (lower is better) Translates to: QEVYIMYPKINTKRY*LKPPSINHLGGGWI Trigger: TATCCAACCTCCACCCAAATGGTTTATCGACGGGGGCTTCAGGCAATACCTCTTAGTGTTGATCTTTGGATACATTATATAAACTTCTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000129956.2 ENSMUST00000223341.2 |
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| 3UTR GCA 90 bp | ACAGTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTaGAACCTTCAAAAGATACTGGCTAATTTGGTAGCATTAGTGAGG | + |
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Preference number: 1 (lower is better) Translates to: TVDDMFCQHTGFECS*NLQKILANLVALVR Trigger: CCTCACTAATGCTACCAAATTAGCCAGTATCTTTTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTACTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR TCA 90 bp | TCATCACCACTGTGTCCATTTACAGAAGCTAATTCCCTTCTCAGCTaGATAAACTGTTCACCAGTTAAAAGATCTCTAGGCAAGTTATTT | + |
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Preference number: 1 (lower is better) Translates to: SSPLCPFTEANSLLS*INCSPVKRSLGKLF Trigger: AAATAACTTGCCTAGAGATCTTTTAACTGGTGAACAGTTTATTCAGCTGAGAAGGGAATTAGCTTCTGTAAATGGACACAGTGGTGATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR TCA 90 bp | CACTGTAATTATATGCAGCTTGATTTGCCTGTAAATCCCCATCAATaGTCTGTGCTGATGACAAATCTTCTGTGTGTGCTTTCTTTTCTT | + |
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Preference number: 1 (lower is better) Translates to: HCNYMQLDLPVNPHQ*SVLMTNLLCVLSFL Trigger: AAGAAAAGAAAGCACACACAGAAGATTTGTCATCAGCACAGATCATTGATGGGGATTTACAGGCAAATCAAGCTGCATATAATTACAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR TCA 90 bp | TGGAGGTTGGATAGAACATGGCAATGTTCTGATCCCCACGTGCAGAGTCTTGATGCAGTCCCTGCATTCTaGCCGGGTTGTGTGGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: WRLDRTWQCSDPHVQSLDAVPAF*PGCVGR Trigger: CCTGCCCACACAACCCGGTCAGAATGCAGGGACTGC...ATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR CCA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATAAAGCATGTGTGCCATaGGTTTCTTTGGGAGGTGAA | + |
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Preference number: 2 (lower is better) Translates to: VCADQLSSGPPLPSECWDKACVP*VSLGGE Trigger: TTCACCTCCCAAAGAAACCCATGGCACACATGCTTT...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR CAA 90 bp | GGTTGGATAGAACATGGCAATGTTCTGATCCCCACGTGCAGAGTCTaGATCTTCAAAGCGCAGCAGTCCCTGCATTCTGACCGGGTTGTG | + |
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Preference number: 2 (lower is better) Translates to: GWIEHGNVLIPTCRV*IFKAQQSLHSDRVV Trigger: CACAACCCGGTCAGAATGCAGGGACTGCTGCGCTTTGAAGATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTTCTATCCAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | CTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCAACGAGGTTGGCATATaGAGCAGTCAAATCTGGTTG | + |
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Preference number: 2 (lower is better) Translates to: LRVCADQLSSGPPLPSECNEVGI*SSQIWL Trigger: CAACCAGATTTGACTGCTGCATATGCCAACCTCGTT...GCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR TCA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATGGAATTAGTAGACATTaGCTGAAACCAGTACTTCAG | + |
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Preference number: 2 (lower is better) Translates to: VCADQLSSGPPLPSECWDGISRH*LKPVLQ Trigger: CTGAAGTACTGGTTTCAGTCAATGTCTACTAATTCC...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR CCA 90 bp | CTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCGATAAACCATTTGGGTaGAGGTTGGATAGAACATGG | + |
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Preference number: 2 (lower is better) Translates to: LRVCADQLSSGPPLPSECDKPFG*RLDRTW Trigger: CCATGTTCTATCCAACCTCCACCCAAATGGTTTATC...GCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR TCA 90 bp | CTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGTACCTTCCCCAAATaGATTCATCAACAATTGCTG | + |
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Preference number: 2 (lower is better) Translates to: LRVCADQLSSGPPLPSECCTFPK*IHQQLL Trigger: CAGCAATTGTTGATGAATTCATTTGGGGAAGGTACA...GCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR TCA 90 bp | AGTTTCTGTAAGGAAGGACGAAGAGAGGCAACGAGGTTGGCATATGCAGCAGTCAACATGGCAATGTTCTaGTCCCCACGTGCAGAGTCT | + |
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Preference number: 2 (lower is better) Translates to: SFCKEGRREATRLAYAAVNMAMF*SPRAES Trigger: AGACTCTGCACGTGGGGATCAGAACATTGCCATGTT...GACTGCTGCATATGCCAACCTCGTTGCCTCTCTTCGTCCTTCCTTACAGAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR TCA 90 bp | CTTTTGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTATGTCTTCAATTCCTaGTGGAAGGTCATCACCAGG | + |
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Preference number: 2 (lower is better) Translates to: LLFLRVCADQLSSGPPLPYVFNS*WKVITR Trigger: CCTGGTGATGACCTTCCATCAGGAATTGAAGACATA...AGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATGAATTCATCAACAATTaGTGCATGAGTCTCCATTTT | + |
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Preference number: 2 (lower is better) Translates to: VCADQLSSGPPLPSECWDEFINN*CMSLHF Trigger: AAAATGGAGACTCATGCAGCAATTGTTGATGAATTC...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR TCA 90 bp | TTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTAAACTCAAGCTAGTCTaGGTCAAATACAAAACTGTC | + |
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Preference number: 2 (lower is better) Translates to: LEFVQTSCPQVRLCLLSAKLKLV*VKYKTV Trigger: GACAGTTTTGTATTTGACTCAGACTAGCTTGAGTTT...AGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGATCTCCTGCATGAGCTaGAAAAGAATTCTAGACCAA | + |
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Preference number: 2 (lower is better) Translates to: CFLEFVQTSCPQVRLCLLISCMS*KRILDQ Trigger: TTGGTCTAGAATTCTTTTGCAGCTCATGCAGGAGAT...CAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGGCTACAAATCTCCTaGATGAGCTGCAAAAGAATT | + |
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Preference number: 2 (lower is better) Translates to: CFLEFVQTSCPQVRLCLLRLQIS*MSCKRI Trigger: AATTCTTTTGCAGCTCATGCAGGAGATTTGTAGCCT...CAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR CCA 90 bp | AGTTTCTGTAAGGAAGGACGAAGAGAGGCAACGAGGTTGGCATATGCAGCAGTCAGGTTGGATAGAACATaGCAATGTTCTGATCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: SFCKEGRREATRLAYAAVRLDRT*QCSDPH Trigger: GTGGGGATCAGAACATTGCCATGTTCTATCCAACCT...GACTGCTGCATATGCCAACCTCGTTGCCTCTCTTCGTCCTTCCTTACAGAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCAATCCCTGTTGTTCCTCAAAAGCTGCCCAAAGCATGTGTGCCATGGGTTTCAGCGTTTGTTAAGCTaGAGTGTAATACAGAGGCTT | + |
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Preference number: 2 (lower is better) Translates to: CQSLLFLKSCPKHVCHGFQRLLS*SVIQRL Trigger: AAGCCTCTGTATTACACTGCAGCTTAACAAACGCTG...AAACCCATGGCACACATGCTTTGGGCAGCTTTTGAGGAACAACAGGGATTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTTGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTCATACAGGTTTTGAATaGAGTTGCAACCTTCAAAAG | + |
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Preference number: 2 (lower is better) Translates to: LLFLRVCADQLSSGPPLPHTGFE*SCNLQK Trigger: CTTTTGAAGGTTGCAACTGCATTCAAAACCTGTATG...AGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTTGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTGTAGATGACATGTTCTaGCAACATACAGGTTTTGAA | + |
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Preference number: 2 (lower is better) Translates to: LLFLRVCADQLSSGPPLPVDDMF*QHTGFE Trigger: TTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC...AGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | AAGAGAGGCAACGAGGTTGGCATATGCAGCAGTCAAATCTGGTTGCAAGCAGACTGTAATACAGAGGCTTaGACTGCAAAGCTTGACAAA | + |
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Preference number: 2 (lower is better) Translates to: KRGNEVGICSSQIWLQADCNTEA*TAKLDK Trigger: TTTGTCAAGCTTTGCAGTGCAAGCCTCTGTATTACA...GTCTGCTTGCAACCAGATTTGACTGCTGCATATGCCAACCTCGTTGCCTCTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTTGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTTCCATATTTCCATaGCGTCGTTCTAAACTTACT | + |
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Preference number: 2 (lower is better) Translates to: LLFLRVCADQLSSGPPLPSSIFP*RRSKLT Trigger: AGTAAGTTTAGAACGACGGCATGGAAATATGGAAGA...AGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR CCA 90 bp | ATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGTCTGTGTGGGCAGGCTTTaGGTTACAGACCATAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: ISKHKNELWLIRACKGRVCVGRL*VTDHRA Trigger: TGCCCTATGGTCTGTAACCCAAAGCCTGCCCACACA...GACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | GTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTGCAACCTTCAAGCTCTGCTGAAGACATaGCTCACTCCTTCAATGCTA | + |
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Preference number: 2 (lower is better) Translates to: VDDMFCQHTGFECSCNLQALLKT*LTPSML Trigger: TAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAGC...TTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR CAA 90 bp | AATGTTAAATTCATCTCATGTGAAATCATAAAGCCTTCTCACCTTTaGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCT | + |
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Preference number: 2 (lower is better) Translates to: NVKFISCEIIKPSHL*FLRVCADQLSSGPP Trigger: AGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGAGATGAATTTAACATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | GTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTGCAACCTTCAAGCCTCACTCCTTCAATaGTATGGTTTTCCATGTACT | + |
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Preference number: 2 (lower is better) Translates to: VDDMFCQHTGFECSCNLQASLLQ*YGFPCT Trigger: AGTACATGGAAAACCATAGCATTGAAGGAGTGAGGC...TTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR CCA 90 bp | TCATGTGAAATCATAAAGCCTTCTCACCTTTTGTTTCTTAGAGTTTGTGCAGACGAGAGGCAACGAGGTTaGCATATGCAGCAGTCAAAT | + |
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Preference number: 2 (lower is better) Translates to: SCEIIKPSHLLFLRVCADERQRG*HMQQSN Trigger: ATTTGACTGCTGCATATGCCAACCTCGTTGCCTCTC...GTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR TCA 90 bp | TCATGTGAAATCATAAAGCCTTCTCACCTTTTGTTTCTTAGAGTTTGTGCAGACCCATTAGAGCATCAATaGCAGCGTTTGTTAAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: SCEIIKPSHLLFLRVCADPLEHQ*QRLLSC Trigger: GCAGCTTAACAAACGCTGTCATTGATGCTCTAATGG...GTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR CAA 90 bp | AGATTTCCCTGTTCATTCTCCCAGTTTATATACATTTCCCATAATTaGTCAGATCGAAAATCTGTTCCTGCAGCTAGAACAGCATGCTCA | + |
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Preference number: 2 (lower is better) Translates to: RFPCSFSQFIYISHN*SDRKSVPAARTACS Trigger: TGAGCATGCTGTTCTAGCTGCAGGAACAGATTTTCGATCTGACAAATTATGGGAAATGTATATAAACTGGGAGAATGAACAGGGAAATCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | GCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGATTGTCATCTCCTGCATGAGCTaGAAAAGAATTCTAGACCAA | + |
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Preference number: 2 (lower is better) Translates to: AFLLPCKLEDSIKVSWIVISCMS*KRILDQ Trigger: TTGGTCTAGAATTCTTTTGCAGCTCATGCAGGAGAT...GACAATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | ATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGTCGAATTCATCAACAATTaGTGCATGAGTCTCCATTTT | + |
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Preference number: 2 (lower is better) Translates to: ISKHKNELWLIRACKGRVEFINN*CMSLHF Trigger: AAAATGGAGACTCATGCAGCAATTGTTGATGAATTC...GACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR GCA 90 bp | TCATGTGAAATCATAAAGCCTTCTCACCTTTTGTTTCTTAGAGTTTGTGCAGACGTAGATGACATGTTCTaGCAACATACAGGTTTTGAA | + |
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Preference number: 2 (lower is better) Translates to: SCEIIKPSHLLFLRVCADVDDMF*QHTGFE Trigger: TTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC...GTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| 3UTR-3UTR CAA 90 bp | CTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGCATTCTGACCGGGTaGTGTGGGCAGGCTTTGGGT | + |
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Preference number: 3 (lower is better) Translates to: LRVCADQLSSGPPLPSECCILTG*CGQALG Trigger: ACCCAAAGCCTGCCCACACAACCCGGTCAGAATGCA...GCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR CCA 72 bp | AAAGCGCAGCAGTCCCTGCATTCTGACCGGGTTGTGTaGGCAGGCTTTGGGTTACAGACCATAGGGCACAGA | + |
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Preference number: 3 (lower is better) Translates to: KAQQSLHSDRVV*AGFGLQTIGHR Trigger: TCTGTGCCCTATGGTCTGTAACCCAAAGCCTGCCCACACAACCCGGTCAGAATGCAGGGACTGCTGCGCTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| 3UTR TCA 72 bp | TGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTaGGTGCTGGGATTTAAAACTGCACCACCAAGCACA | + |
|
Preference number: 3 (lower is better) Translates to: CRPAVLRSASAF*VLGFKTAPPST Trigger: TGTGCTTGGTGGTGCAGTTTTAAATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| 3UTR TCA 72 bp | AGTCTTGATCTTCAAAGCGCAGCAGTCCCTGCATTCTaGCCGGGTTGTGTGGGCAGGCTTTGGGTTACAGAC | + |
|
Preference number: 3 (lower is better) Translates to: SLDLQSAAVPAF*PGCVGRLWVTD Trigger: GTCTGTAACCCAAAGCCTGCCCACACAACCCGGTCAGAATGCAGGGACTGCTGCGCTTTGAAGATCAAGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR CCA 72 bp | CAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTaGGATTTAAAACTGCACCACCAAGCACACCTAAAC | + |
|
Preference number: 3 (lower is better) Translates to: QLSSGPPLPSEC*DLKLHHQAHLN Trigger: GTTTAGGTGTGCTTGGTGGTGCAGTTTTAAATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| 3UTR TCA 72 bp | GCCCAAAGCATGTGTGCCATGGGTTTCTTTGGGAGGTaGACAGTACAAGCTCTGCTGAAGACATGCCTCACT | + |
|
Preference number: 3 (lower is better) Translates to: AQSMCAMGFFGR*TVQALLKTCLT Trigger: AGTGAGGCATGTCTTCAGCAGAGCTTGTACTGTTCACCTCCCAAAGAAACCCATGGCACACATGCTTTGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR GCA 72 bp | GGTTGGATAGAACATGGCAATGTTCTGATCCCCACGTaGAGAGTCTTGATCTTCAAAGCGCAGCAGTCCCTG | + |
|
Preference number: 3 (lower is better) Translates to: GWIEHGNVLIPT*RVLIFKAQQSL Trigger: CAGGGACTGCTGCGCTTTGAAGATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTTCTATCCAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR-3UTR CAA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATTGGTTTTCCATGTACTaGGCATACTTTATTGAACCA | + |
|
Preference number: 3 (lower is better) Translates to: VCADQLSSGPPLPSECWDWFSMY*AYFIEP Trigger: TGGTTCAATAAAGTATGCCAAGTACATGGAAAACCA...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR CCA 72 bp | GTTTCTGTAAGGAAGGACGAAGAGAGGCAACGAGGTTaGCATATGCAGCAGTCAAATCTGGTTGCAAGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: VSVRKDEERQRG*HMQQSNLVASR Trigger: TCTGCTTGCAACCAGATTTGACTGCTGCATATGCCAACCTCGTTGCCTCTCTTCGTCCTTCCTTACAGAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGTCAAGGTGGCTAGCTTaGTCAAGGACATTAAAAATA | + |
|
Preference number: 3 (lower is better) Translates to: CFLEFVQTSCPQVRLCLLSRWLA*SRTLKI Trigger: TATTTTTAATGTCCTTGACAAAGCTAGCCACCTTGA...CAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| 3UTR CCA 72 bp | GTCGATAAACCATTTGGGTGGAGGTTGGATAGAACATaGCAATGTTCTGATCCCCACGTGCAGAGTCTTGAT | + |
|
Preference number: 3 (lower is better) Translates to: VDKPFGWRLDRT*QCSDPHVQSLD Trigger: ATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCCACCCAAATGGTTTATCGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129956.2 ENSMUST00000223341.2 |
||
| 3UTR CCA 72 bp | AGAGGCAACGAGGTTGGCATATGCAGCAGTCAAATCTaGTTGCAAGCAGACCATCTCCTTAATCCAAAACTC | + |
|
Preference number: 3 (lower is better) Translates to: RGNEVGICSSQI*LQADHLLNPKL Trigger: GAGTTTTGGATTAAGGAGATGGTCTGCTTGCAACCAGATTTGACTGCTGCATATGCCAACCTCGTTGCCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR TCA 72 bp | TGGGTTTCTTTGGGAGGTGAACAGTACAAGCTCTGCTaGAGACATGCCTCACTCCTTCAATGCTATGGTTTT | + |
|
Preference number: 3 (lower is better) Translates to: WVSLGGEQYKLC*RHASLLQCYGF Trigger: AAAACCATAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAGCTTGTACTGTTCACCTCCCAAAGAAACCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR-3UTR CAA 90 bp | GTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTGCAACCTTCAACATTGCCAATCCCTGTaGTTCCTCAAAAGCTGCCCA | + |
|
Preference number: 3 (lower is better) Translates to: VDDMFCQHTGFECSCNLQHCQSL*FLKSCP Trigger: TGGGCAGCTTTTGAGGAACAACAGGGATTGGCAATG...TTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR GCA 72 bp | TATATAATGTATCCAAAGATCAACACTAAGAGGTATTaGCTGAAGCCCCCGTCGATAAACCATTTGGGTGGA | + |
|
Preference number: 3 (lower is better) Translates to: YIMYPKINTKRY*LKPPSINHLGG Trigger: TCCACCCAAATGGTTTATCGACGGGGGCTTCAGGCAATACCTCTTAGTGTTGATCTTTGGATACATTATATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000129956.2 ENSMUST00000223341.2 |
||
| 3UTR CCA 72 bp | TTCAGATCGGACATCAGCAAACATAAAAATGAGCTGTaGCTAATTAGAGCTTGTAAGGGAAGAGTCAACTGG | + |
|
Preference number: 3 (lower is better) Translates to: FRSDISKHKNEL*LIRACKGRVNW Trigger: CCAGTTGACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| 3UTR TCA 72 bp | TATATGCAGCTTGATTTGCCTGTAAATCCCCATCAATaGTCTGTGCTGATGACAAATCTTCTGTGTGTGCTT | + |
|
Preference number: 3 (lower is better) Translates to: YMQLDLPVNPHQ*SVLMTNLLCVL Trigger: AAGCACACACAGAAGATTTGTCATCAGCACAGATCATTGATGGGGATTTACAGGCAAATCAAGCTGCATATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR GCA 72 bp | GACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTaGAACCTTCAAAAGATACTGGCTAATTTGGTAGCA | + |
|
Preference number: 3 (lower is better) Translates to: DMFCQHTGFECS*NLQKILANLVA Trigger: TGCTACCAAATTAGCCAGTATCTTTTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| 3UTR-3UTR CAA 90 bp | TCATGTGAAATCATAAAGCCTTCTCACCTTTTGTTTCTTAGAGTTTGTGCAGACTCAAGGTGGCTAGCTTaGTCAAGGACATTAAAAATA | + |
|
Preference number: 3 (lower is better) Translates to: SCEIIKPSHLLFLRVCADSRWLA*SRTLKI Trigger: TATTTTTAATGTCCTTGACAAAGCTAGCCACCTTGA...GTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| 3UTR TCA 72 bp | ACAATGTTAATCTCTATTTTGTGTACCTTCCCCAAATaGATTCATCAACAATTGCTGCATGAGTCTCCATTT | + |
|
Preference number: 3 (lower is better) Translates to: TMLISILCTFPK*IHQQLLHESPF Trigger: AAATGGAGACTCATGCAGCAATTGTTGATGAATTCATTTGGGGAAGGTACACAAAATAGAGATTAACATTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR TCA 90 bp | TTTGGGTGGAGGTTGGATAGAACATGGCAATGTTCTGATCCCCACGTGCAGAGTGCAGTCCCTGCATTCTaGCCGGGTTGTGTGGGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: FGWRLDRTWQCSDPHVQSAVPAF*PGCVGR Trigger: CCTGCCCACACAACCCGGTCAGAATGCAGGGACTGC...ACTCTGCACGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCCACCCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223341.2 |
||
| 3UTR CAA 72 bp | CCTGAAGCCCCCGTCGATAAACCATTTGGGTGGAGGTaGGATAGAACATGGCAATGTTCTGATCCCCACGTG | + |
|
Preference number: 4 (lower is better) Translates to: PEAPVDKPFGWR*DRTWQCSDPHV Trigger: CACGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCCACCCAAATGGTTTATCGACGGGGGCTTCAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129956.2 ENSMUST00000223341.2 |
||
| CDS-3UTR TCA 90 bp | CTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTATGTCTTCAATTCCTaGTGGAAGGTCATCACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LRVCADQLSSGPPLPSECYVFNS*WKVITR Trigger: CCTGGTGATGACCTTCCATCAGGAATTGAAGACATA...GCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR GCA 90 bp | AACACTAAGAGGTATTGCCTGAAGCCCCCGTCGATAAACCATTTGGGTGGAGGTAAGCGCAGCAGTCCCTaGATTCTGACCGGGTTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: NTKRYCLKPPSINHLGGGKRSSP*ILTGLC Trigger: ACACAACCCGGTCAGAATGCAGGGACTGCTGCGCTT...ACCTCCACCCAAATGGTTTATCGACGGGGGCTTCAGGCAATACCTCTTAGTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223341.2 |
||
| CDS-3UTR GCA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATTCGCTTTTCAAGGTCTaGATACTTTTTCCAGTAACC | + |
|
Preference number: 4 (lower is better) Translates to: VCADQLSSGPPLPSECWDSLFKV*ILFPVT Trigger: GGTTACTGGAAAAAGTATGCAGACCTTGAAAAGCGA...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | TGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGGCTCTGCTGAAGACATaGCTCACTCCTTCAATGCTA | + |
|
Preference number: 4 (lower is better) Translates to: CFLEFVQTSCPQVRLCLLALLKT*LTPSML Trigger: TAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAGC...CAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR CCA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATACTGTACAGCTGTGTTaGAATACCAAGAATACGATC | + |
|
Preference number: 4 (lower is better) Translates to: VCADQLSSGPPLPSECWDTVQLC*NTKNTI Trigger: GATCGTATTCTTGGTATTCCAACACAGCTGTACAGT...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| 3UTR CAA 72 bp | GAACATGGCAATGTTCTGATCCCCACGTGCAGAGTCTaGATCTTCAAAGCGCAGCAGTCCCTGCATTCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: EHGNVLIPTCRV*IFKAQQSLHSD Trigger: GTCAGAATGCAGGGACTGCTGCGCTTTGAAGATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| CDS-3UTR TCA 90 bp | CTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTTCTTTATAGCATCCTaGAGCAAATGTTCGGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LRVCADQLSSGPPLPSECFFIAS*SKCSAS Trigger: AGAAGCCGAACATTTGCTTCAGGATGCTATAAAGAA...GCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR TCA 90 bp | TTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTCAGCCTGTAAAATCCTaGGGATTCATTTCTACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: LEFVQTSCPQVRLCLLSAQPVKS*GFISTV Trigger: AACAGTAGAAATGAATCCTCAGGATTTTACAGGCTG...AGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATAAGGTTCACAGCATTTaGCATTTCATTTTCTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: VCADQLSSGPPLPSECWDKVHSI*HFIFFC Trigger: ACAGAAGAAAATGAAATGGCAAATGCTGTGAACCTT...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | GGAGGTTGGATAGAACATGGCAATGTTCTGATCCCCACGTGCAGAGTCTTGATCAGGGAAGTCTCCTTCTaGTTCTGTCACTGGAAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: GGWIEHGNVLIPTCRVLIREVSF*FCHWKV Trigger: AACCTTCCAGTGACAGAAGCAGAAGGAGACTTCCCT...GATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| CDS-3UTR CCA 90 bp | TTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTAAATTTTTCAAACTCTaGAGGGAAGTCTCCTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: LEFVQTSCPQVRLCLLSAKFFKL*REVSFC Trigger: GCAGAAGGAGACTTCCCTCCAGAGTTTGAAAAATTT...AGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| 3UTR CAA 72 bp | GGCAACGAGGTTGGCATATGCAGCAGTCAAATCTGGTaGCAAGCAGACCATCTCCTTAATCCAAAACTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: GNEVGICSSQIW*QADHLLNPKLL Trigger: GAGGAGTTTTGGATTAAGGAGATGGTCTGCTTGCAACCAGATTTGACTGCTGCATATGCCAACCTCGTTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| 3UTR CAA 72 bp | AGTTTCTGTAAGGAAGGACGAAGAGAGGCAACGAGGTaGGCATATGCAGCAGTCAAATCTGGTTGCAAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: SFCKEGRREATR*AYAAVKSGCKQ Trigger: CTGCTTGCAACCAGATTTGACTGCTGCATATGCCAACCTCGTTGCCTCTCTTCGTCCTTCCTTACAGAAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| CDS-3UTR TCA 90 bp | CTTTTGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCCTGTTCTACATACTaGAGCAAATATACCCAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LLFLRVCADQLSSGPPLPSCSTY*SKYTQP Trigger: AGGCTGGGTATATTTGCTTCAGTATGTAGAACAGGA...AGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR TCA 90 bp | TTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTCATTTTAATAGGCAATaGACCATGTATGGCTTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: LEFVQTSCPQVRLCLLSAHFNRQ*TMYGFV Trigger: GACAAAGCCATACATGGTTCATTGCCTATTAAAATG...AGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR GCA 90 bp | ATGTATCCAAAGATCAACACTAAGAGGTATTGCCTGAAGCCCCCGTCGATAAACTTCTGTAGATGCATGTaGGCTGGGAGAGGCATCAGG | + |
|
Preference number: 4 (lower is better) Translates to: MYPKINTKRYCLKPPSINFCRCM*AGRGIR Trigger: CCTGATGCCTCTCCCAGCGCACATGCATCTACAGAA...GTTTATCGACGGGGGCTTCAGGCAATACCTCTTAGTGTTGATCTTTGGATACAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| CDS-3UTR TCA 90 bp | CGAAAATCTGTTCCTGCAGCTAGAACAGCATGCTCAAAAGTTCCTCTTATTGTATACTACTGCTACCTCTaGACTGTTGCCTGTGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: RKSVPAARTACSKVPLIVYYCYL*TVACAA Trigger: GGCAGCACAGGCAACAGTTCAGAGGTAGCAGTAGTA...TACAATAAGAGGAACTTTTGAGCATGCTGTTCTAGCTGCAGGAACAGATTTTCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | GTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTGCAACCTTCAATTCTGTAGATGCATGTaGGCTGGGAGAGGCATCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VDDMFCQHTGFECSCNLQFCRCM*AGRGIR Trigger: CCTGATGCCTCTCCCAGCGCACATGCATCTACAGAA...TTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | TGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAAGGTTCACAGCATTTaGCATTTCATTTTCTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: CFLEFVQTSCPQVRLCLLKVHSI*HFIFFC Trigger: ACAGAAGAAAATGAAATGGCAAATGCTGTGAACCTT...CAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | AGTTTCTGTAAGGAAGGACGAAGAGAGGCAACGAGGTTGGCATATGCAGCAGTCTCGCTTTTCAAGGTCTaGATACTTTTTCCAGTAACC | + |
|
Preference number: 4 (lower is better) Translates to: SFCKEGRREATRLAYAAVSLFKV*ILFPVT Trigger: GGTTACTGGAAAAAGTATGCAGACCTTGAAAAGCGA...GACTGCTGCATATGCCAACCTCGTTGCCTCTCTTCGTCCTTCCTTACAGAAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | ATAATCTATTCAAAGGCAGAGCATGTCAACAGTTCATCTCTCCTGGAGTTAGAGTGCCCAAAGCATGTGTaGCATGGGTTTCTTTGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: IIYSKAEHVNSSSLLELECPKHV*HGFLWE Trigger: CTCCCAAAGAAACCCATGGCACACATGCTTTGGGCA...CTCTAACTCCAGGAGAGATGAACTGTTGACATGCTCTGCCTTTGAATAGATTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR CCA 90 bp | TGTAGTGTTTGTCTCCTGATCACCAGGGTCCAATGTTTCTTTCAAGAAGTTTATTCTGACCGGGTTGTGTaGGCAGGCTCATCTGATTGT | + |
|
Preference number: 4 (lower is better) Translates to: CSVCLLITRVQCFFQEVYSDRVV*AGSSDC Trigger: ACAATCAGATGAGCCTGCCCACACAACCCGGTCAGA...ATAAACTTCTTGAAAGAAACATTGGACCCTGGTGATCAGGAGACAAACACTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223341.2 |
||
| CDS-3UTR GCA 90 bp | ATAATCTATTCAAAGGCAGAGCATGTCAACAGTTCATCTCTCCTGGAGTTAGAGCTGAACTGTTGCCTGTaGTGCCATTATCAGAGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: IIYSKAEHVNSSSLLELELNCCL*CHYQSS Trigger: GGAACTCTGATAATGGCAGCACAGGCAACAGTTCAG...CTCTAACTCCAGGAGAGATGAACTGTTGACATGCTCTGCCTTTGAATAGATTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | GTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTGCAACCTTCAACTGAACTGTTGCCTGTaGTGCCATTATCAGAGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: VDDMFCQHTGFECSCNLQLNCCL*CHYQSS Trigger: GGAACTCTGATAATGGCAGCACAGGCAACAGTTCAG...TTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | CCAAAGATCAACACTAAGAGGTATTGCCTGAAGCCCCCGTCGATAAACCATTTGTCGCTTTTCAAGGTCTaGATACTTTTTCCAGTAACC | + |
|
Preference number: 4 (lower is better) Translates to: PKINTKRYCLKPPSINHLSLFKV*ILFPVT Trigger: GGTTACTGGAAAAAGTATGCAGACCTTGAAAAGCGA...CAAATGGTTTATCGACGGGGGCTTCAGGCAATACCTCTTAGTGTTGATCTTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000129956.2 ENSMUST00000223341.2 |
||
| CDS-3UTR CCA 90 bp | GTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTGCAACCTTCAATGCCATGGGTTTCTTTaGGAGGTGAACAGTACAAGC | + |
|
Preference number: 4 (lower is better) Translates to: VDDMFCQHTGFECSCNLQCHGFL*EVNSTS Trigger: GCTTGTACTGTTCACCTCCCAAAGAAACCCATGGCA...TTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR TCA 90 bp | GCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGATTGTCTACTACTGCTACCTCTaGACTGTTGCCTGTGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: AFLLPCKLEDSIKVSWIVYYCYL*TVACAA Trigger: GGCAGCACAGGCAACAGTTCAGAGGTAGCAGTAGTA...GACAATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| CDS-3UTR TCA 90 bp | TCATGTGAAATCATAAAGCCTTCTCACCTTTTGTTTCTTAGAGTTTGTGCAGACCAGTACAAGCTCTGCTaGAGACATGCCTCACTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SCEIIKPSHLLFLRVCADQYKLC*RHASLL Trigger: AAGGAGTGAGGCATGTCTTCAGCAGAGCTTGTACTG...GTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
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| CDS-3UTR TCA 90 bp | TCATGTGAAATCATAAAGCCTTCTCACCTTTTGTTTCTTAGAGTTTGTGCAGACGGTTTCTTTGGGAGGTaGACAGTACAAGCTCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SCEIIKPSHLLFLRVCADGFFGR*TVQALL Trigger: CAGCAGAGCTTGTACTGTTCACCTCCCAAAGAAACC...GTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
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| CDS-3UTR GCA 90 bp | ATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGTCAGGGAAGTCTCCTTCTaGTTCTGTCACTGGAAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: ISKHKNELWLIRACKGRVREVSF*FCHWKV Trigger: AACCTTCCAGTGACAGAAGCAGAAGGAGACTTCCCT...GACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| CDS-3UTR GCA 90 bp | ATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGTCAACACTAAGAGGTATTaGCTGAAGCCCCCGTCGATA | + |
|
Preference number: 4 (lower is better) Translates to: ISKHKNELWLIRACKGRVNTKRY*LKPPSI Trigger: TATCGACGGGGGCTTCAGGCAATACCTCTTAGTGTT...GACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
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| CDS-3UTR CCA 90 bp | ATAATCTATTCAAAGGCAGAGCATGTCAACAGTTCATCTCTCCTGGAGTTAGAGAAAGCATGTGTGCCATaGGTTTCTTTGGGAGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: IIYSKAEHVNSSSLLELEKACVP*VSLGGE Trigger: TTCACCTCCCAAAGAAACCCATGGCACACATGCTTT...CTCTAACTCCAGGAGAGATGAACTGTTGACATGCTCTGCCTTTGAATAGATTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR TCA 90 bp | ATAATCTATTCAAAGGCAGAGCATGTCAACAGTTCATCTCTCCTGGAGTTAGAGTTCTTCTGGTTCTTCTaGGCCATTTTCAGCTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: IIYSKAEHVNSSSLLELEFFWFF*AIFSFP Trigger: AGGAAAGCTGAAAATGGCTCAGAAGAACCAGAAGAA...CTCTAACTCCAGGAGAGATGAACTGTTGACATGCTCTGCCTTTGAATAGATTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
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| CDS-3UTR TCA 90 bp | ATAATCTATTCAAAGGCAGAGCATGTCAACAGTTCATCTCTCCTGGAGTTAGAGCAGCCTGTAAAATCCTaGGGATTCATTTCTACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: IIYSKAEHVNSSSLLELEQPVKS*GFISTV Trigger: AACAGTAGAAATGAATCCTCAGGATTTTACAGGCTG...CTCTAACTCCAGGAGAGATGAACTGTTGACATGCTCTGCCTTTGAATAGATTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| CDS-3UTR TCA 90 bp | GCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGATTGTCGTAGTGTTTGTCTCCTaGTCACCAGGGTCCAATGTT | + |
|
Preference number: 4 (lower is better) Translates to: AFLLPCKLEDSIKVSWIVVVFVS*SPGSNV Trigger: AACATTGGACCCTGGTGATCAGGAGACAAACACTAC...GACAATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR GCA 90 bp | TCATGTGAAATCATAAAGCCTTCTCACCTTTTGTTTCTTAGAGTTTGTGCAGACAACTGTTGCCTGTGCTaGCATTATCAGAGTTCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: SCEIIKPSHLLFLRVCADNCCLC*HYQSSC Trigger: ACAGGAACTCTGATAATGGCAGCACAGGCAACAGTT...GTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | GCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGATTGTCCTACCTCTGAACTGTTaGCTGTGCTGCCATTATCAG | + |
|
Preference number: 4 (lower is better) Translates to: AFLLPCKLEDSIKVSWIVLPLNC*LCCHYQ Trigger: CTGATAATGGCAGCACAGGCAACAGTTCAGAGGTAG...GACAATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| CDS-3UTR CCA 90 bp | GTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTGCAACCTTCAAACTCCTTCAATGCTATaGTTTTCCATGTACTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: VDDMFCQHTGFECSCNLQTPSML*FSMYLA Trigger: TGCCAAGTACATGGAAAACCATAGCATTGAAGGAGT...TTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
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| 3UTR CAA 72 bp | TTCATCTCATGTGAAATCATAAAGCCTTCTCACCTTTaGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: FISCEIIKPSHL*FLRVCADQLSS Trigger: TGAGGACAGCTGGTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGAGATGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| CDS-3UTR TCA 90 bp | CGAAAATCTGTTCCTGCAGCTAGAACAGCATGCTCAAAAGTTCCTCTTATTGTATTAACGCACCTCATCTaGTTGTTTAATGTTGTCATG | + |
|
Preference number: 4 (lower is better) Translates to: RKSVPAARTACSKVPLIVLTHLI*LFNVVM Trigger: CATGACAACATTAAACAATCAGATGAGGTGCGTTAA...TACAATAAGAGGAACTTTTGAGCATGCTGTTCTAGCTGCAGGAACAGATTTTCG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| CDS-3UTR GCA 90 bp | GCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGATTGTCAACTGTTGCCTGTGCTaGCATTATCAGAGTTCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: AFLLPCKLEDSIKVSWIVNCCLC*HYQSSC Trigger: ACAGGAACTCTGATAATGGCAGCACAGGCAACAGTT...GACAATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | GCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGATTGTCTTGTTCCTCAAAAGCTaGCCAAAGCATGTGTGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: AFLLPCKLEDSIKVSWIVLFLKS*PKHVCH Trigger: ATGGCACACATGCTTTGGGCAGCTTTTGAGGAACAA...GACAATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR CCA 90 bp | TGTAGTGTTTGTCTCCTGATCACCAGGGTCCAATGTTTCTTTCAAGAAGTTTATAAATTTTTCAAACTCTaGAGGGAAGTCTCCTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: CSVCLLITRVQCFFQEVYKFFKL*REVSFC Trigger: GCAGAAGGAGACTTCCCTCCAGAGTTTGAAAAATTT...ATAAACTTCTTGAAAGAAACATTGGACCCTGGTGATCAGGAGACAAACACTACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
||
| CDS-3UTR GCA 90 bp | GCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGATTGTCGCCTCACTCCTTCAATaGTATGGTTTTCCATGTACT | + |
|
Preference number: 4 (lower is better) Translates to: AFLLPCKLEDSIKVSWIVASLLQ*YGFPCT Trigger: AGTACATGGAAAACCATAGCATTGAAGGAGTGAGGC...GACAATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR GCA 90 bp | ATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGTCTCTTCCATATTTCCATaGCGTCGTTCTAAACTTACT | + |
|
Preference number: 4 (lower is better) Translates to: ISKHKNELWLIRACKGRVSSIFP*RRSKLT Trigger: AGTAAGTTTAGAACGACGGCATGGAAATATGGAAGA...GACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR TCA 90 bp | TCATGTGAAATCATAAAGCCTTCTCACCTTTTGTTTCTTAGAGTTTGTGCAGACTTTCTTCATTTTGCTTaGGGTCACAACTGTATTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SCEIIKPSHLLFLRVCADFLHFA*GHNCIP Trigger: TGGAATACAGTTGTGACCTCAAGCAAAATGAAGAAA...GTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR CCA 90 bp | TCATGTGAAATCATAAAGCCTTCTCACCTTTTGTTTCTTAGAGTTTGTGCAGACCTGAGCCTTTTCCAATaGTTTCACATGAAAATAAGG | + |
|
Preference number: 4 (lower is better) Translates to: SCEIIKPSHLLFLRVCADLSLFQ*FHMKIR Trigger: CCTTATTTTCATGTGAAACCATTGGAAAAGGCTCAG...GTCTGCACAAACTCTAAGAAACAAAAGGTGAGAAGGCTTTATGATTTCACATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| 3UTR CAA 72 bp | TGCTTGAGGTCACAACTGTATTCCATTTCAAGTAAATaGAGGTATAACTTTGTGTTCTCCTTATCTTTTTCG | + |
|
Preference number: 4 (lower is better) Translates to: CLRSQLYSISSK*RYNFVFSLSFS Trigger: CGAAAAAGATAAGGAGAACACAAAGTTATACCTCAATTTACTTGAAATGGAATACAGTTGTGACCTCAAGCA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129956.2 |
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| CDS-3UTR CAA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATTTCGCAATCGAACCATaGCCAATCCTAGAACACATT | + |
|
Preference number: 5 (lower is better) Translates to: VCADQLSSGPPLPSECWDFAIEP*PILEHI Trigger: AATGTGTTCTAGGATTGGCAATGGTTCGATTGCGAA...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR CAA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATTGGTTTTCCATGTACTaGGCATACTTAATCCAAAAC | + |
|
Preference number: 5 (lower is better) Translates to: VCADQLSSGPPLPSECWDWFSMY*AYLIQN Trigger: GTTTTGGATTAAGTATGCCAAGTACATGGAAAACCA...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR CAA 90 bp | TTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTATTAATATTCCCCTGTaGTTCCTCAAAAGCTGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: LEFVQTSCPQVRLCLLSAINIPL*FLKSCP Trigger: TGGGCAGCTTTTGAGGAACAACAGGGGAATATTAAT...AGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR CAA 90 bp | GTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGAGTGCTGGGATCCTTATCTTTTTCGATaGCTTCCAAAAGTACCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: VCADQLSSGPPLPSECWDPYLFR*LPKVPF Trigger: GAAAGGTACTTTTGGAAGCAATCGAAAAAGATAAGG...ATCCCAGCACTCAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
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| CDS-3UTR CAA 90 bp | ATGTATCCAAAGATCAACACTAAGAGGTATTGCCTGAAGCCCCCGTCGATAAACTGCATTCTGACCGGGTaGTGTGGGCAGGCTCATCTG | + |
|
Preference number: 5 (lower is better) Translates to: MYPKINTKRYCLKPPSINCILTG*CGQAHL Trigger: CAGATGAGCCTGCCCACACAACCCGGTCAGAATGCA...GTTTATCGACGGGGGCTTCAGGCAATACCTCTTAGTGTTGATCTTTGGATACAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223341.2 |
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| CDS-3UTR CAA 90 bp | TGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTCTGGAACCATGTATGGCTTaGTCAAAGCAATTGAGGATA | + |
|
Preference number: 5 (lower is better) Translates to: CFLEFVQTSCPQVRLCLLEPCMA*SKQLRI Trigger: TATCCTCAATTGCTTTGACAAAGCCATACATGGTTC...CAGAAGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS GCA 90 bp | AATCTGGATGCTCTACTACTGCTACCTCTGAACTGTTGCCTGTGCTaGCATTATCAGAGTTCCTGTACTCTTCCATGTGGGAGTTTTGCA | + |
|
Preference number: 5 (lower is better) Translates to: NLDALLLLPLNCCLC*HYQSSCTLPCGSFA Trigger: TGCAAAACTCCCACATGGAAGAGTACAGGAACTCTGATAATGGCAGCACAGGCAACAGTTCAGAGGTAGCAGTAGTAGAGCATCCAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS GCA 90 bp | TTTTCTTCTGTAGATGCATGTGCGCTGGGAGAGGCATCAGGCGACTaGTCCATCTCCGTAACGTTCATAATCTCAGTACTAAAATCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: FSSVDACALGEASGD*SISVTFIISVLKSG Trigger: TCCAGATTTTAGTACTGAGATTATGAACGTTACGGAGATGGAGCAGTCGCCTGATGCCTCTCCCAGCGCACATGCATCTACAGAAGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR CAA 90 bp | CTTTTGTTTCTTAGAGTTTGTGCAGACCAGCTGTCCTCAGGTCCGCCTCTGCCTTATATGCAGCTTGATTaGCCTGTAAATCCCCATCAA | + |
|
Preference number: 5 (lower is better) Translates to: LLFLRVCADQLSSGPPLPYMQLD*PVNPHQ Trigger: TTGATGGGGATTTACAGGCAAATCAAGCTGCATATA...AGGCAGAGGCGGACCTGAGGACAGCTGGTCTGCACAAACTCTAAGAAACAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS GCA 90 bp | ATTAATATTCCCCTGTTGTTCCTCAAAAGCTGCCCAAAGCATGTGTaGCATGGGTTTCTTTGGGAGGTGAACAGTACAAGCTCTGCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: INIPLLFLKSCPKHV*HGFLWEVNSTSSAE Trigger: TTCAGCAGAGCTTGTACTGTTCACCTCCCAAAGAAACCCATGGCACACATGCTTTGGGCAGCTTTTGAGGAACAACAGGGGAATATTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS GCA 90 bp | TGCTCCATCTCCGTAACGTTCATAATCTCAGTACTAAAATCTGGATaGTCTACTACTGCTACCTCTGAACTGTTGCCTGTGCTGCCATTA | + |
|
Preference number: 5 (lower is better) Translates to: CSISVTFIISVLKSG*STTATSELLPVLPL Trigger: TAATGGCAGCACAGGCAACAGTTCAGAGGTAGCAGTAGTAGAGCATCCAGATTTTAGTACTGAGATTATGAACGTTACGGAGATGGAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
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| CDS GCA 90 bp | CCAGTAACCATAGCAATACGGGTAGTGTACGAAAAATTTGTCAAATaGTTTCCTGGCAGCCATCAAATGATTCTCCTGTTCTACATACTG | + |
|
Preference number: 5 (lower is better) Translates to: PVTIAIRVVYEKFVK*FPGSHQMILLFYIL Trigger: CAGTATGTAGAACAGGAGAATCATTTGATGGCTGCCAGGAAAGCATTTGACAAATTTTTCGTACACTACCCGTATTGCTATGGTTACTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS-3UTR CAA 90 bp | GTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTGCAACCTTCAAGACTGTACAGCTGTGTaGGAATACCAAGAATACGAT | + |
|
Preference number: 5 (lower is better) Translates to: VDDMFCQHTGFECSCNLQDCTAV*EYQEYD Trigger: ATCGTATTCTTGGTATTCCAACACAGCTGTACAGTC...TTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS-3UTR CAA 90 bp | GTAGATGACATGTTCTGCCAACATACAGGTTTTGAATGCAGTTGCAACCTTCAATTTTCTTCATTTTGCTaGAGGTCACAACTGTATTCC | + |
|
Preference number: 5 (lower is better) Translates to: VDDMFCQHTGFECSCNLQFSSFC*RSQLYS Trigger: GGAATACAGTTGTGACCTCAAGCAAAATGAAGAAAA...TTGAAGGTTGCAACTGCATTCAAAACCTGTATGTTGGCAGAACATGTCATCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS GCA 72 bp | GTAGATGCATGTGCGCTGGGAGAGGCATCAGGCGACTaGTCCATCTCCGTAACGTTCATAATCTCAGTACTA | + |
|
Preference number: 6 (lower is better) Translates to: VDACALGEASGD*SISVTFIISVL Trigger: TAGTACTGAGATTATGAACGTTACGGAGATGGAGCAGTCGCCTGATGCCTCTCCCAGCGCACATGCATCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS GCA 72 bp | GCTCTACTACTGCTACCTCTGAACTGTTGCCTGTGCTaGCATTATCAGAGTTCCTGTACTCTTCCATGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: ALLLLPLNCCLC*HYQSSCTLPCG Trigger: CCCACATGGAAGAGTACAGGAACTCTGATAATGGCAGCACAGGCAACAGTTCAGAGGTAGCAGTAGTAGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS GCA 72 bp | GATGCTCTACTACTGCTACCTCTGAACTGTTGCCTGTaGTGCCATTATCAGAGTTCCTGTACTCTTCCATGT | + |
|
Preference number: 6 (lower is better) Translates to: DALLLLPLNCCL*CHYQSSCTLPC Trigger: ACATGGAAGAGTACAGGAACTCTGATAATGGCAGCACAGGCAACAGTTCAGAGGTAGCAGTAGTAGAGCATC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS GCA 72 bp | GGCTTCATTAATATTCCCCTGTTGTTCCTCAAAAGCTaGCCAAAGCATGTGTGCCATGGGTTTCTTTGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: GFINIPLLFLKS*PKHVCHGFLWE Trigger: CTCCCAAAGAAACCCATGGCACACATGCTTTGGGCAGCTTTTGAGGAACAACAGGGGAATATTAATGAAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
||
| CDS CAA 72 bp | AAATCTGGATGCTCTACTACTGCTACCTCTGAACTGTaGCCTGTGCTGCCATTATCAGAGTTCCTGTACTCT | + |
|
Preference number: 6 (lower is better) Translates to: KSGCSTTATSEL*PVLPLSEFLYS Trigger: AGAGTACAGGAACTCTGATAATGGCAGCACAGGCAACAGTTCAGAGGTAGCAGTAGTAGAGCATCCAGATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS TCA 72 bp | AGTACTAAAATCTGGATGCTCTACTACTGCTACCTCTaGACTGTTGCCTGTGCTGCCATTATCAGAGTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: STKIWMLYYCYL*TVACAAIIRVP Trigger: AGGAACTCTGATAATGGCAGCACAGGCAACAGTTCAGAGGTAGCAGTAGTAGAGCATCCAGATTTTAGTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS GCA 72 bp | CCAAAATTTTTCAAACTCTGGAGGGAAGTCTCCTTCTaGTTCTGTCACTGGAAGGTTCACAGCATTTGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: PKFFKLWREVSF*FCHWKVHSICH Trigger: ATGGCAAATGCTGTGAACCTTCCAGTGACAGAAGCAGAAGGAGACTTCCCTCCAGAGTTTGAAAAATTTTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS CAA 72 bp | CGGGTTGTGTGGGCAGGCTCATCTGATTGTTTAATGTaGTCATGTCGCTTTTCAAGGTCTGCATACTTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: RVVWAGSSDCLM*SCRFSRSAYFF Trigger: GAAAAAGTATGCAGACCTTGAAAAGCGACATGACAACATTAAACAATCAGATGAGCCTGCCCACACAACCCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000223341.2 |
||
| CDS GCA 72 bp | TCCGTAACGTTCATAATCTCAGTACTAAAATCTGGATaGTCTACTACTGCTACCTCTGAACTGTTGCCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: SVTFIISVLKSG*STTATSELLPV Trigger: CACAGGCAACAGTTCAGAGGTAGCAGTAGTAGAGCATCCAGATTTTAGTACTGAGATTATGAACGTTACGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120580.8 ENSMUST00000129956.2 |
||
| CDS CAA 72 bp | GCCGTCGTTCTAAACTTACTCTTCGCAATCGAACCATaGCCAATCCTAGAACACATTCTTCAAACGTTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: AVVLNLLFAIEP*PILEHILQTFS Trigger: TGAGAACGTTTGAAGAATGTGTTCTAGGATTGGCAATGGTTCGATTGCGAAGAGTAAGTTTAGAACGACGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120580.8 |
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