RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRPF38B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027881

Ensembl transcript IDs: ENSMUST00000029480.9, ENSMUST00000129273.8, ENSMUST00000199735.5

Found 188 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GACTGCGACTGCGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTaGGATCTAAGCCCCGATCAATGCTTCGGGATCTTCGCCTTTCTT +
Preference number: 1 (lower is better)
Translates to: DCDCDFCASPDCGFA*DLSPDQCFGIFAFL
Trigger: AAGAAAGGCGAAGATCCCGAAGCATTGATCGGGGCTTAGATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 90 bp CTTTCCTATCACGACTGCGACTGCGACTTCTGTGCCTCTCCCGACTaGGGCTTCGCCTGCGATCTAAGCCCCGATCAATGCTTCGGGATC +
Preference number: 1 (lower is better)
Translates to: LSYHDCDCDFCASPD*GFACDLSPDQCFGI
Trigger: GATCCCGAAGCATTGATCGGGGCTTAGATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 90 bp CCCGATCCCTGTCTCTTCTATCCCCTTTCCTATCACGACTGCGACTaGGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTGCGATCTA +
Preference number: 1 (lower is better)
Translates to: PDPCLFYPLSYHDCD*DFCASPDCGFACDL
Trigger: TAGATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGACAGGGATCGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 90 bp CTCTTTCCCGATCCCTGTCTCTTCTATCCCCTTTCCTATCACGACTaGGACTGCGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTGC +
Preference number: 1 (lower is better)
Translates to: LFPDPCLFYPLSYHD*DCDFCASPDCGFAC
Trigger: GCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGACAGGGATCGGGAAAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 90 bp TCTCTTCTATCCCCTTTCCTATCACGACTGCGACTGCGACTTCTGTaGCTCTCCCGACTGCGGCTTCGCCTGCGATCTAAGCCCCGATCA +
Preference number: 1 (lower is better)
Translates to: SLLSPFLSRLRLRLL*LSRLRLRLRSKPRS
Trigger: TGATCGGGGCTTAGATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR TCA 90 bp GCTCTCTGGCTCTCCACTCTGGCTGCTCTGATGATCCTGTCTGTCTaGCTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGAACGGTC +
Preference number: 1 (lower is better)
Translates to: ALWLSTLAALMILSV*LVLAIIMLSLVGTV
Trigger: GACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGACAGACAGGATCATCAGAGCAGCCAGAGTGGAGAGCCAGAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 90 bp CTCCACTCTGGCTGCTCTGATGATCCTGTCTGTCTGACTGGTCCTTaGTATCATTATGCTCTCTCTTGTGGGAACGGTCTTGGCTCCTGC +
Preference number: 1 (lower is better)
Translates to: LHSGCSDDPVCLTGP*YHYALSCGNGLGSC
Trigger: GCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGACAGACAGGATCATCAGAGCAGCCAGAGTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CCA 90 bp GACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGAACGGTCTTaGCTCCTGCTGCGCTTTCTAGACTTCTCTCTGCTAGGGCTGTGT +
Preference number: 1 (lower is better)
Translates to: DWSLLSLCSLLWERS*LLLRFLDFSLLGLC
Trigger: ACACAGCCCTAGCAGAGAGAAGTCTAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CCA 90 bp TCCTGTCTGTCTGACTGGTCCTTGCTATCATTATGCTCTCTCTTGTaGGAACGGTCTTGGCTCCTGCTGCGCTTTCTAGACTTCTCTCTG +
Preference number: 1 (lower is better)
Translates to: SCLSDWSLLSLCSLL*ERSWLLLRFLDFSL
Trigger: CAGAGAGAAGTCTAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGACAGACAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CCA 90 bp ATCTTCTTGGAGACCTCCGTGGGCTCAGTGATCTTCTTGGAGATCTaGATCGCCGTCTCTCAACATGTCTGTCTATCTCCTCAATGCCTT +
Preference number: 1 (lower is better)
Translates to: IFLETSVGSVIFLEI*IAVSQHVCLSPQCL
Trigger: AAGGCATTGAGGAGATAGACAGACATGTTGAGAGACGGCGATCCAGATCTCCAAGAAGATCACTGAGCCCACGGAGGTCTCCAAGAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 90 bp TGCTTTTGTGTTCCTTTTCTTGGCTCTCTGGCTCTCCACTCTGGCTaGTCTGATGATCCTGTCTGTCTGACTGGTCCTTGCTATCATTAT +
Preference number: 1 (lower is better)
Translates to: CFCVPFLGSLALHSG*SDDPVCLTGPCYHY
Trigger: ATAATGATAGCAAGGACCAGTCAGACAGACAGGATCATCAGAGCAGCCAGAGTGGAGAGCCAGAGAGCCAAGAAAAGGAACACAAAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CCA 90 bp CTTCGCCTTTCTTTCTCTCTCTCTTTGGCTTCCCGCTCTAGTCGTTaGCGTTCTTTCTCTCTCTCTAATTCTCTGTCAAAACTAGAAGAT +
Preference number: 1 (lower is better)
Translates to: LRLSFSLSLASRSSR*RSFSLSNSLSKLED
Trigger: ATCTTCTAGTTTTGACAGAGAATTAGAGAGAGAGAAAGAACGCCAACGACTAGAGCGGGAAGCCAAAGAGAGAGAGAAAGAAAGGCGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CCA 90 bp GGGTTGGGTATACCTTATATACATAAATCCAAGGGCTCTGATATATaGAGAGTCTGTATGTGTTATGAGACCCATCACTTGCTTTCGAGT +
Preference number: 1 (lower is better)
Translates to: GLGIPYIHKSKGSDI*RVCMCYETHHLLSS
Trigger: ACTCGAAAGCAAGTGATGGGTCTCATAACACATACAGACTCTCCATATATCAGAGCCCTTGGATTTATGTATATAAGGTATACCCAACCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR TCA 90 bp AAAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTaGAAACATCAATGCGTAATGGGATTACAAAGGCACTTCCCTACA +
Preference number: 1 (lower is better)
Translates to: KNARTFCASCVNSTG*KHQCVMGLQRHFPT
Trigger: TGTAGGGAAGTGCCTTTGTAATCCCATTACGCATTGATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 90 bp GCTCTGATATATGGAGAGTCTGTATGTGTTATGAGACCCATCACTTaGTTTCGAGTTAACTTCAGGGTAAATAATTTGTATAGAAGGCAA +
Preference number: 1 (lower is better)
Translates to: ALIYGESVCVMRPIT*FRVNFRVNNLYRRQ
Trigger: TTGCCTTCTATACAAATTATTTACCCTGAAGTTAACTCGAAAGCAAGTGATGGGTCTCATAACACATACAGACTCTCCATATATCAGAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR CCA 90 bp TTTCCTAGGTCGAGTTTTAATCTGCTGATCAATGTTCTTCTGGACTaGAACTGGAATTCTTGGAAACAAAGTAGAAAACCATTCCAGTTT +
Preference number: 1 (lower is better)
Translates to: FPRSSFNLLINVLLD*NWNSWKQSRKPFQF
Trigger: AAACTGGAATGGTTTTCTACTTTGTTTCCAAGAATTCCAGTTCCAGTCCAGAAGAACATTGATCAGCAGATTAAAACTCGACCTAGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CCA 90 bp ACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGAACGGTCTTGGCTCCTGCCTCTACCTGCGACCCTaGGCTGCTCCGAGCCTCGCT +
Preference number: 2 (lower is better)
Translates to: TGPCYHYALSCGNGLGSCLYLRP*AAPSLA
Trigger: AGCGAGGCTCGGAGCAGCCCAGGGTCGCAGGTAGAG...GCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR-3UTR CCA 90 bp ACGACTGCGACTGCGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTGCGATCGAAGCATCTCTCCAATaGTCATTACACAGCCTCCAC +
Preference number: 2 (lower is better)
Translates to: TTATATSVPLPTAASPAIEASLQ*SLHSLH
Trigger: GTGGAGGCTGTGTAATGACCATTGGAGAGATGCTTC...GATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR TCA 90 bp TCTCTTCTATCCCCTTTCCTATCACGACTGCGACTGCGACTTCTGTGCCTCTCCATGGCTCAACATGCGTaGCCTCTACCTGCGACCCTG +
Preference number: 2 (lower is better)
Translates to: SLLSPFLSRLRLRLLCLSMAQHA*PLPATL
Trigger: CAGGGTCGCAGGTAGAGGTCACGCATGTTGAGCCAT...GGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR-3UTR TCA 90 bp ATGCTCTCTCTTGTGGGAACGGTCTTGGCTCCTGCTGCGCTTTCTAGACTTCTCAGCCTCCACCAGCTTTaGCATCTAGGTCCGCATGAA +
Preference number: 2 (lower is better)
Translates to: MLSLVGTVLAPAALSRLLSLHQL*HLGPHE
Trigger: TTCATGCGGACCTAGATGTCAAAGCTGGTGGAGGCT...GAGAAGTCTAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
3UTR CAA 90 bp TTTGCCTTCTCCTTGCTTTCGTTTTTATGTCTGCTTGACTTGTCCTaGCTCCTGCTCCTGCTCCGCTTCCCTGCGTTTCTGCTCCTGCTC +
Preference number: 2 (lower is better)
Translates to: FAFSLLSFLCLLDLS*LLLLLRFPAFLLLL
Trigger: GAGCAGGAGCAGAAACGCAGGGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCAAGGAGAAGGCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp CTATCCCCTTTCCTATCACGACTGCGACTGCGACTTCTGTGCCTCTCCCGACTGAGAGTGCATAACTACTaGACAATCTCAACTTGGGGG +
Preference number: 2 (lower is better)
Translates to: LSPFLSRLRLRLLCLSRLRVHNY*TISTWG
Trigger: CCCCCAAGTTGAGATTGTGCAGTAGTTATGCACTCT...CAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp TCGAGTTTTAATCTGCTGATCAATGTTCTTCTGGACTGGAACTGGAATTCTTGGCCTGCGACCCTGGGCTaGTCCGAGCCTCGCTGCAAG +
Preference number: 2 (lower is better)
Translates to: SSFNLLINVLLDWNWNSWPATLG*SEPRCK
Trigger: CTTGCAGCGAGGCTCGGAGCAGCCCAGGGTCGCAGG...CCAAGAATTCCAGTTCCAGTCCAGAAGAACATTGATCAGCAGATTAAAACTCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR-3UTR CCA 90 bp GCCTGCGATCTAAGCCCCGATCAATGCTTCGGGATCTTCGCCTTTCTTTCTCTCTCCCGCTCTAGTCGTTaGCGTTCTTTCTCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: ACDLSPDQCFGIFAFLSLSRSSR*RSFSLS
Trigger: AGAGAGAGAGAAAGAACGCCAACGACTAGAGCGGGA...GAGAGAAAGAAAGGCGAAGATCCCGAAGCATTGATCGGGGCTTAGATCGCAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp CAACACTGCCAGTTCTTCCTTGACTGCCACTTCTGCTTCTTTTATTTGCCTTCTCCTTGCTCCTGCTCCTaGTCCGCTTCCCTGCGTTTC +
Preference number: 2 (lower is better)
Translates to: QHCQFFLDCHFCFFYLPSPCSCS*SASLRF
Trigger: GAAACGCAGGGAAGCGGAGCAGGAGCAGGAGCAAGG...AGAAGGCAAATAAAAGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAGTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp TTTCGTTTTTATGTCTGCTTGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTTCCAAGGCCTTCTTGCTATaGCCTCTCACAGCTCAGGAC +
Preference number: 2 (lower is better)
Translates to: FRFYVCLTCPCSCSCSASKAFLL*PLTAQD
Trigger: GTCCTGAGCTGTGAGAGGGCATAGCAAGAAGGCCTT...GGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
3UTR-3UTR CCA 90 bp TTTCGTTTTTATGTCTGCTTGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTTCCACTCCCCTTTTCCCATaGCTCAACATGCGTGACCTC +
Preference number: 2 (lower is better)
Translates to: FRFYVCLTCPCSCSCSASTPLFP*LNMRDL
Trigger: GAGGTCACGCATGTTGAGCCATGGGAAAAGGGGAGT...GGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR CAA 90 bp TGCTTCTTGATCTTCTTGGAGACCTCCGTGGGCTCAGTGATCTTCTaGGAGATCTGGATCGCCGTCTCTCAACATGTCTGTCTATCTCCT +
Preference number: 2 (lower is better)
Translates to: CFLIFLETSVGSVIF*EIWIAVSQHVCLSP
Trigger: AGGAGATAGACAGACATGTTGAGAGACGGCGATCCAGATCTCCAAGAAGATCACTGAGCCCACGGAGGTCTCCAAGAAGATCAAGAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR TCA 90 bp GCCTGCGATCTAAGCCCCGATCAATGCTTCGGGATCTTCGCCTTTCTTTCTCTCCTAACAGTGTCCCTTTaGGGTAGAATGCTAAAAGGA +
Preference number: 2 (lower is better)
Translates to: ACDLSPDQCFGIFAFLSLLTVSL*GRMLKG
Trigger: TCCTTTTAGCATTCTACCTCAAAGGGACACTGTTAG...GAGAGAAAGAAAGGCGAAGATCCCGAAGCATTGATCGGGGCTTAGATCGCAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR TCA 90 bp GCCTGCGATCTAAGCCCCGATCAATGCTTCGGGATCTTCGCCTTTCTTTCTCTCAGTCTGTATGTGTTATaGGACCCATCACTTGCTTTC +
Preference number: 2 (lower is better)
Translates to: ACDLSPDQCFGIFAFLSLSLYVL*DPSLAF
Trigger: GAAAGCAAGTGATGGGTCTCATAACACATACAGACT...GAGAGAAAGAAAGGCGAAGATCCCGAAGCATTGATCGGGGCTTAGATCGCAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR-3UTR TCA 90 bp TGCTTTCGTTTTTATGTCTGCTTGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTATGACTTCTGCTTCTTaGTCTTCTTGGAGACCTCCG +
Preference number: 2 (lower is better)
Translates to: CFRFYVCLTCPCSCSCSAMTSAS*SSWRPP
Trigger: CGGAGGTCTCCAAGAAGATCAAGAAGCAGAAGTCAT...AGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp TGTCTGTCTGACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGAACGGTCTCTAAGCCCCGATCAATaGTTCGGGATCTTCGCCTTT +
Preference number: 2 (lower is better)
Translates to: CLSDWSLLSLCSLLWERSLSPDQ*FGIFAF
Trigger: AAAGGCGAAGATCCCGAAGCATTGATCGGGGCTTAG...AGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGACAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGCTTTCCTATCACGACTaGGACTGCGACTTCTGTGCC +
Preference number: 2 (lower is better)
Translates to: RNGITKALPYTKENTAYGLSYHD*DCDFCA
Trigger: GGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAG...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGGCTCTCCACTCTGGCTaGTCTGATGATCCTGTCTGT +
Preference number: 2 (lower is better)
Translates to: RNGITKALPYTKENTAYGALHSG*SDDPVC
Trigger: ACAGACAGGATCATCAGAGCAGCCAGAGTGGAGAGC...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CAA 90 bp TGCTTCTTTTATTTGCCTTCTCCTTGCTTTCGTTTTTATGTCTGCTaGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTTCCCTGCGTTTC +
Preference number: 2 (lower is better)
Translates to: CFFYLPSPCFRFYVC*TCPCSCSCSASLRF
Trigger: GAAACGCAGGGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCAAGGAGAAGGCAAATAAAAGAAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR TCA 90 bp ACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGAACGGTCTTGGCTCCTGCCTAACAGTGTCCCTTTaGGGTAGAATGCTAAAAGGA +
Preference number: 2 (lower is better)
Translates to: TGPCYHYALSCGNGLGSCLTVSL*GRMLKG
Trigger: TCCTTTTAGCATTCTACCTCAAAGGGACACTGTTAG...GCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR TCA 90 bp TCCCTGTCTCTTCTATCCCCTTTCCTATCACGACTGCGACTGCGACTTCTGTGCACCATTCCAGTTTTGTaGGAAAAGAACGAAGCATCT +
Preference number: 2 (lower is better)
Translates to: SLSLLSPFLSRLRLRLLCTIPVL*EKNEAS
Trigger: AGATGCTTCGTTCTTTTCTCACAAAACTGGAATGGT...GCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGACAGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp GATGATCCTGTCTGTCTGACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGCCCGGTGATGACTTCTaGTTCTTGATCTTCTTGGAG +
Preference number: 2 (lower is better)
Translates to: DDPVCLTGPCYHYALSCGPGDDF*FLIFLE
Trigger: CTCCAAGAAGATCAAGAAGCAGAAGTCATCACCGGG...CCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGACAGACAGGATCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp TTCTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGTCACCCCTACTTCTCTaGTCCTTGGAGCGCTCTCTT +
Preference number: 2 (lower is better)
Translates to: FSIIKCFGSLGLTAPLLLSPLLL*SLERSL
Trigger: AAGAGAGCGCTCCAAGGAGCAGAGAAGTAGGGGTGA...CAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR-3UTR GCA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGCTTCCCTGCGTTTCTaGTCCTGCTCCTGTGTTTCC +
Preference number: 2 (lower is better)
Translates to: MRNGITKALPYTKENTAYASLRF*SCSCVS
Trigger: GGAAACACAGGAGCAGGAGCAGAAACGCAGGGAAGC...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR TCA 90 bp ACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGAACGGTCTTGGCTCCTGCCGAGTTTTAATCTGCTaGTCAATGTTCTTCTGGACT +
Preference number: 2 (lower is better)
Translates to: TGPCYHYALSCGNGLGSCRVLIC*SMFFWT
Trigger: AGTCCAGAAGAACATTGATCAGCAGATTAAAACTCG...GCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp CAACACTGCCAGTTCTTCCTTGACTGCCACTTCTGCTTCTTTTATTTGCCTTCTCTAAGCCCCGATCAATaGTTCGGGATCTTCGCCTTT +
Preference number: 2 (lower is better)
Translates to: QHCQFFLDCHFCFFYLPSLSPDQ*FGIFAF
Trigger: AAAGGCGAAGATCCCGAAGCATTGATCGGGGCTTAG...AGAAGGCAAATAAAAGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAGTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CCA 90 bp AAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTGAAAACATCCCGCACATCCCCGTCTaGCCAGCAGTTTTCCTACTC +
Preference number: 2 (lower is better)
Translates to: KMQEHSVHHVSTQQGENIPHIPV*PAVFLL
Trigger: GAGTAGGAAAACTGCTGGCCAGACGGGGATGTGCGG...GATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR-3UTR TCA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAAACATCTAGGTCCGCATaGAGGCCTTCTTGCTATGCC +
Preference number: 2 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKTSRSA*RPSCYA
Trigger: GGCATAGCAAGAAGGCCTTCATGCGGACCTAGATGT...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp TCCAAGGGCTCTGATATATGGAGAGTCTGTATGTGTTATGAGACCCATCACTTGAGAGTGCATAACTACTaGACAATCTCAACTTGGGGG +
Preference number: 2 (lower is better)
Translates to: SKGSDIWRVCMCYETHHLRVHNY*TISTWG
Trigger: CCCCCAAGTTGAGATTGTGCAGTAGTTATGCACTCT...CAAGTGATGGGTCTCATAACACATACAGACTCTCCATATATCAGAGCCCTTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR-3UTR CCA 90 bp TCTGACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGAACGGTCTTGGCTCCAAGGTAATATACAGTaGACAAGAATGTTAACCCTC +
Preference number: 2 (lower is better)
Translates to: SDWSLLSLCSLLWERSWLQGNIQ*TRMLTL
Trigger: GAGGGTTAACATTCTTGTCCACTGTATATTACCTTG...GAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp TTCTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGATGAGACCCATCACTTaGTTTCGAGTTAACTTCAGG +
Preference number: 2 (lower is better)
Translates to: FSIIKCFGSLGLTAPLLLMRPIT*FRVNFR
Trigger: CCTGAAGTTAACTCGAAAGCAAGTGATGGGTCTCAT...CAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR-3UTR GCA 90 bp TACAAATTTAACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGCTGCGTTTCTGCTCCTaGTCCTGTGTTTCCTCTCTC +
Preference number: 2 (lower is better)
Translates to: YKFNQHGNHAKGIKTFSRLRFCS*SCVSSL
Trigger: GAGAGAGGAAACACAGGAGCAGGAGCAGAAACGCAG...CCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTTAAATTTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR GCA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAAAGAGTGCATAACTACTaGACAATCTCAACTTGGGGG +
Preference number: 2 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKRVHNY*TISTWG
Trigger: CCCCCAAGTTGAGATTGTGCAGTAGTTATGCACTCT...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CCA 90 bp ATACAGTGGACAAGAATGTTAACCCTCCAACTGTTGCCTCCATGTATACTGAAAAGGTCTGTAGGGGGTTaGGTATACCTTATATACATA +
Preference number: 2 (lower is better)
Translates to: IQWTRMLTLQLLPPCILKRSVGG*VYLIYI
Trigger: TATGTATATAAGGTATACCCAACCCCCTACAGACCT...TTTCAGTATACATGGAGGCAACAGTTGGAGGGTTAACATTCTTGTCCACTGTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
3UTR GCA 72 bp CACGACTGCGACTGCGACTTCTGTGCCTCTCCCGACTaGGGCTTCGCCTGCGATCTAAGCCCCGATCAATGC +
Preference number: 3 (lower is better)
Translates to: HDCDCDFCASPD*GFACDLSPDQC
Trigger: GCATTGATCGGGGCTTAGATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 72 bp TGCGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTaGGATCTAAGCCCCGATCAATGCTTCGGGATCTTC +
Preference number: 3 (lower is better)
Translates to: CDFCASPDCGFA*DLSPDQCFGIF
Trigger: GAAGATCCCGAAGCATTGATCGGGGCTTAGATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 72 bp TCCCCTTTCCTATCACGACTGCGACTGCGACTTCTGTaGCTCTCCCGACTGCGGCTTCGCCTGCGATCTAAG +
Preference number: 3 (lower is better)
Translates to: SPFLSRLRLRLL*LSRLRLRLRSK
Trigger: CTTAGATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 72 bp TGTCTCTTCTATCCCCTTTCCTATCACGACTGCGACTaGGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCC +
Preference number: 3 (lower is better)
Translates to: CLFYPLSYHDCD*DFCASPDCGFA
Trigger: GGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 72 bp GATCCCTGTCTCTTCTATCCCCTTTCCTATCACGACTaGGACTGCGACTTCTGTGCCTCTCCCGACTGCGGC +
Preference number: 3 (lower is better)
Translates to: DPCLFYPLSYHD*DCDFCASPDCG
Trigger: GCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGACAGGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp ATGCTCTCTCTTGTGGGAACGGTCTTGGCTCCTGCTGCGCTTTCTAGACTTCTCCTGCTTGACTTGTCCTaGCTCCTGCTCCTGCTCCGC +
Preference number: 3 (lower is better)
Translates to: MLSLVGTVLAPAALSRLLLLDLS*LLLLLR
Trigger: GCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAG...GAGAAGTCTAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 72 bp GACTGCGGCTTCGCCTGCGATCTAAGCCCCGATCAATaGTTCGGGATCTTCGCCTTTCTTTCTCTCTCTCTT +
Preference number: 3 (lower is better)
Translates to: DCGFACDLSPDQ*FGIFAFLSLSL
Trigger: AAGAGAGAGAGAAAGAAAGGCGAAGATCCCGAAGCATTGATCGGGGCTTAGATCGCAGGCGAAGCCGCAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 72 bp CCTTGCTTTCGTTTTTATGTCTGCTTGACTTGTCCTTaGTCCTGCTCCTGCTCCGCTTCCCTGCGTTTCTGC +
Preference number: 3 (lower is better)
Translates to: PCFRFYVCLTCP*SCSCSASLRFC
Trigger: GCAGAAACGCAGGGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CCA 72 bp GAGACCTCCGTGGGCTCAGTGATCTTCTTGGAGATCTaGATCGCCGTCTCTCAACATGTCTGTCTATCTCCT +
Preference number: 3 (lower is better)
Translates to: ETSVGSVIFLEI*IAVSQHVCLSP
Trigger: AGGAGATAGACAGACATGTTGAGAGACGGCGATCCAGATCTCCAAGAAGATCACTGAGCCCACGGAGGTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CCA 72 bp TCTGACTGGTCCTTGCTATCATTATGCTCTCTCTTGTaGGAACGGTCTTGGCTCCTGCTGCGCTTTCTAGAC +
Preference number: 3 (lower is better)
Translates to: SDWSLLSLCSLL*ERSWLLLRFLD
Trigger: GTCTAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR TCA 72 bp ATTTGCCTTCTCCTTGCTTTCGTTTTTATGTCTGCTTaGCTTGTCCTTGCTCCTGCTCCTGCTCCGCTTCCC +
Preference number: 3 (lower is better)
Translates to: ICLLLAFVFMSA*LVLAPAPAPLP
Trigger: GGGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCAAGGAGAAGGCAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR TCA 72 bp TCTCTCCAATGGTCATTACACAGCCTCCACCAGCTTTaGCATCTAGGTCCGCATGAAGGCCTTCTTGCTATG +
Preference number: 3 (lower is better)
Translates to: SLQWSLHSLHQL*HLGPHEGLLAM
Trigger: CATAGCAAGAAGGCCTTCATGCGGACCTAGATGTCAAAGCTGGTGGAGGCTGTGTAATGACCATTGGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp TGTCTGTCTGACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGAACGGTCTACTGCCAGTTCTTCCTaGACTGCCACTTCTGCTTCT +
Preference number: 3 (lower is better)
Translates to: CLSDWSLLSLCSLLWERSTASSS*TATSAS
Trigger: AGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAGT...AGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGACAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CCA 72 bp TTGCTATCATTATGCTCTCTCTTGTGGGAACGGTCTTaGCTCCTGCTGCGCTTTCTAGACTTCTCTCTGCTA +
Preference number: 3 (lower is better)
Translates to: LLSLCSLLWERS*LLLRFLDFSLL
Trigger: TAGCAGAGAGAAGTCTAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGACTGCCAGTTCTTCCTaGACTGCCACTTCTGCTTCT +
Preference number: 3 (lower is better)
Translates to: RNGITKALPYTKENTAYGTASSS*TATSAS
Trigger: AGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAGT...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACTGCTTCTTGATCTTCTaGGAGACCTCCGTGGGCTCA +
Preference number: 3 (lower is better)
Translates to: MRNGITKALPYTKENTAYCFLIF*ETSVGS
Trigger: TGAGCCCACGGAGGTCTCCAAGAAGATCAAGAAGCA...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGTGTCGTCTGTCCTCCTaGTCTTCTTTGTGCTTCTTC +
Preference number: 3 (lower is better)
Translates to: RNGITKALPYTKENTAYGCRLSS*SSLCFF
Trigger: GAAGAAGCACAAAGAAGACAAGGAGGACAGACGACA...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp CAACACTGCCAGTTCTTCCTTGACTGCCACTTCTGCTTCTTTTATTTGCCTTCTCGTTTTTATGTCTGCTaGACTTGTCCTTGCTCCTGC +
Preference number: 3 (lower is better)
Translates to: QHCQFFLDCHFCFFYLPSRFYVC*TCPCSC
Trigger: GCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACG...AGAAGGCAAATAAAAGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAGTGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp CAACACTGCCAGTTCTTCCTTGACTGCCACTTCTGCTTCTTTTATTTGCCTTCTTTCTTGGACTCTTTTTaGTCATCTCTGTGTCGTCTG +
Preference number: 3 (lower is better)
Translates to: QHCQFFLDCHFCFFYLPSFLDSF*SSLCRL
Trigger: CAGACGACACAGAGATGACAAAAAAGAGTCCAAGAA...AGAAGGCAAATAAAAGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAGTGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp TACAAATTTAACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGCGCATGAAGGCCTTCTaGCTATGCCCTCTCACAGCT +
Preference number: 3 (lower is better)
Translates to: YKFNQHGNHAKGIKTFSRRMKAF*LCPLTA
Trigger: AGCTGTGAGAGGGCATAGCAAGAAGGCCTTCATGCG...CCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTTAAATTTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
3UTR GCA 72 bp GACTGCCACTTCTGCTTCTTTTATTTGCCTTCTCCTTaGTTTCGTTTTTATGTCTGCTTGACTTGTCCTTGC +
Preference number: 3 (lower is better)
Translates to: DCHFCFFYLPSP*FRFYVCLTCPC
Trigger: GCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCAAGGAGAAGGCAAATAAAAGAAGCAGAAGTGGCAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp ATTATGAAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTCATGTTAGTCAGCTATaGTCAGTCCCAAACCTCCTC +
Preference number: 3 (lower is better)
Translates to: IMKSTAMLTSVHNHNLTPHVSQL*SVPNLL
Trigger: GAGGAGGTTTGGGACTGACAATAGCTGACTAACATG...AGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTTCATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
3UTR TCA 72 bp AGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTaGAAACATCAATGCGTAATGGGATTACAAAGGCAC +
Preference number: 3 (lower is better)
Translates to: RTFCASCVNSTG*KHQCVMGLQRH
Trigger: GTGCCTTTGTAATCCCATTACGCATTGATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR-3UTR CAA 90 bp TACAAATTTAACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGCTGTCTGACTGGTCCTaGCTATCATTATGCTCTCTC +
Preference number: 3 (lower is better)
Translates to: YKFNQHGNHAKGIKTFSRLSDWS*LSLCSL
Trigger: GAGAGAGCATAATGATAGCAAGGACCAGTCAGACAG...CCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTTAAATTTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CCA 72 bp CAACATATTAACAAGAGCTTCCAAGGTAATATACAGTaGACAAGAATGTTAACCCTCCAACTGTTGCCTCCA +
Preference number: 3 (lower is better)
Translates to: QHINKSFQGNIQ*TRMLTLQLLPP
Trigger: TGGAGGCAACAGTTGGAGGGTTAACATTCTTGTCCACTGTATATTACCTTGGAAGCTCTTGTTAATATGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR GCA 72 bp TATGGAGAGTCTGTATGTGTTATGAGACCCATCACTTaGTTTCGAGTTAACTTCAGGGTAAATAATTTGTAT +
Preference number: 3 (lower is better)
Translates to: YGESVCVMRPIT*FRVNFRVNNLY
Trigger: ATACAAATTATTTACCCTGAAGTTAACTCGAAAGCAAGTGATGGGTCTCATAACACATACAGACTCTCCATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129273.8
CDS-3UTR CCA 90 bp CACGACTGCGACTGCGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTGCGATCATTGCTGCTGCTGCTaGGTCACGGCCGCGGCCGCC +
Preference number: 4 (lower is better)
Translates to: HDCDCDFCASPDCGFACDHCCCC*VTAAAA
Trigger: GGCGGCCGCGGCCGTGACCCAGCAGCAGCAGCAATG...ATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp ACGACTGCGACTGCGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTGCGATCGCACATTGCCCTGCTTaGCCGACACCGCCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: TTATATSVPLPTAASPAIAHCPA*PTPPAW
Trigger: CCAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGC...GATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp ACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGAACGGTCTTGGCTCCTGCGGCAGCACATTGCCCTaGTTGCCCGACACCGCCGGC +
Preference number: 4 (lower is better)
Translates to: TGPCYHYALSCGNGLGSCGSTLP*LPDTAG
Trigger: GCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCTGCC...GCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CCA 90 bp AACACAGCCTACGGGGAGCTCAGAGTGCATAACTACTGCACAATCTCAACTTGGCATTGCTGCTGCTGCTaGGTCACGGCCGCGGCCGCC +
Preference number: 4 (lower is better)
Translates to: NTAYGELRVHNYCTISTWHCCCC*VTAAAA
Trigger: GGCGGCCGCGGCCGTGACCCAGCAGCAGCAGCAATG...CCAAGTTGAGATTGTGCAGTAGTTATGCACTCTGAGCTCCCCGTAGGCTGTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CCA 90 bp TTTCGTTTTTATGTCTGCTTGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTTCCCATTGCTGCTGCTGCTaGGTCACGGCCGCGGCCGCC +
Preference number: 4 (lower is better)
Translates to: FRFYVCLTCPCSCSCSASHCCCC*VTAAAA
Trigger: GGCGGCCGCGGCCGTGACCCAGCAGCAGCAGCAATG...GGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp AACACAGCCTACGGGGAGCTCAGAGTGCATAACTACTGCACAATCTCAACTTGGGCTGCGGTTGCGAGTTaGCGGTCAGCGCGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: NTAYGELRVHNYCTISTWAAVAS*RSARGC
Trigger: ACAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGC...CCAAGTTGAGATTGTGCAGTAGTTATGCACTCTGAGCTCCCCGTAGGCTGTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp TGCTTTCGTTTTTATGTCTGCTTGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTGGCAGCACATTGCCCTaGTTGCCCGACACCGCCGGC +
Preference number: 4 (lower is better)
Translates to: CFRFYVCLTCPCSCSCSAGSTLP*LPDTAG
Trigger: GCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCTGCC...AGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp TCTCACAGCTCAGGACATGTTAGTCAGCTATTGTCAGTCCCAAACCTCCTCATCGCTGCGGTTGCGAGTTaGCGGTCAGCGCGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: SHSSGHVSQLLSVPNLLIAAVAS*RSARGC
Trigger: ACAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGC...GATGAGGAGGTTTGGGACTGACAATAGCTGACTAACATGTCCTGAGCTGTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp CTATGCCCTCTCACAGCTCAGGACATGTTAGTCAGCTATTGTCAGTCCCAAACCGCACATTGCCCTGCTTaGCCGACACCGCCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: LCPLTAQDMLVSYCQSQTAHCPA*PTPPAW
Trigger: CCAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGC...GGTTTGGGACTGACAATAGCTGACTAACATGTCCTGAGCTGTGAGAGGGCATAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp CTATCCCCTTTCCTATCACGACTGCGACTGCGACTTCTGTGCCTCTCCCGACTGTCATGGTCTTCTCGTTaGCCCACAGCGGCAGCACAT +
Preference number: 4 (lower is better)
Translates to: LSPFLSRLRLRLLCLSRLSWSSR*PTAAAH
Trigger: ATGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGA...CAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR TCA 90 bp TCCCTGTCTCTTCTATCCCCTTTCCTATCACGACTGCGACTGCGACTTCTGTGCCCTCGTGGTAGGTCTTaGGCTCGTAGAGCTGCACTT +
Preference number: 4 (lower is better)
Translates to: SLSLLSPFLSRLRLRLLCPRGRS*ARRAAL
Trigger: AAGTGCAGCTCTACGAGCTCAAGACCTACCACGAGG...GCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGACAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp TTCTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGCCGCCGCCGCCACATTaGTGCTGCTGCTGGGTCACG +
Preference number: 4 (lower is better)
Translates to: FSIIKCFGSLGLTAPLLLPPPPH*CCCWVT
Trigger: CGTGACCCAGCAGCAGCAGCAATGTGGCGGCGGCGG...CAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
CDS-3UTR CCA 90 bp CACGACTGCGACTGCGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTGCGATAGGTCTGTAGGGGGTTaGGTATACCTTATATACATA +
Preference number: 4 (lower is better)
Translates to: HDCDCDFCASPDCGFACDRSVGG*VYLIYI
Trigger: TATGTATATAAGGTATACCCAACCCCCTACAGACCT...ATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
3UTR CAA 72 bp AAGATCCATGGCCCTCCCGGTGATGACTTCTGCTTCTaGATCTTCTTGGAGACCTCCGTGGGCTCAGTGATC +
Preference number: 4 (lower is better)
Translates to: KIHGPPGDDFCF*IFLETSVGSVI
Trigger: GATCACTGAGCCCACGGAGGTCTCCAAGAAGATCAAGAAGCAGAAGTCATCACCGGGAGGGCCATGGATCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR TCA 90 bp TCTCTTCTATCCCCTTTCCTATCACGACTGCGACTGCGACTTCTGTGCCTCTCCCGTAGAGCTGCACTTTaGAGTAAGGCGACGACAGGA +
Preference number: 4 (lower is better)
Translates to: SLLSPFLSRLRLRLLCLSRRAAL*SKATTG
Trigger: TCCTGTCGTCGCCTTACTTCAAAGTGCAGCTCTACG...GGAGAGGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CCA 90 bp TTTCGTTTTTATGTCTGCTTGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTTCCCCGCACATCCCCGTCTaGCCAGCAGTTTTCCTACTC +
Preference number: 4 (lower is better)
Translates to: FRFYVCLTCPCSCSCSASPHIPV*PAVFLL
Trigger: GAGTAGGAAAACTGCTGGCCAGACGGGGATGTGCGG...GGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp TCGAGTTTTAATCTGCTGATCAATGTTCTTCTGGACTGGAACTGGAATTCTTGGGCTGCGGTTGCGAGTTaGCGGTCAGCGCGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: SSFNLLINVLLDWNWNSWAAVAS*RSARGC
Trigger: ACAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGC...CCAAGAATTCCAGTTCCAGTCCAGAAGAACATTGATCAGCAGATTAAAACTCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp ATACAGTGGACAAGAATGTTAACCCTCCAACTGTTGCCTCCATGTATACTGAAACCGCCGCCGCCACATTaGTGCTGCTGCTGGGTCACG +
Preference number: 4 (lower is better)
Translates to: IQWTRMLTLQLLPPCILKPPPPH*CCCWVT
Trigger: CGTGACCCAGCAGCAGCAGCAATGTGGCGGCGGCGG...TTTCAGTATACATGGAGGCAACAGTTGGAGGGTTAACATTCTTGTCCACTGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGCCTTGCTCCTGCTCCTaGTCCGCTTCCCTGCGTTTC +
Preference number: 4 (lower is better)
Translates to: RNGITKALPYTKENTAYGPCSCS*SASLRF
Trigger: GAAACGCAGGGAAGCGGAGCAGGAGCAGGAGCAAGG...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR TCA 90 bp GAAGGCCTTCTTGCTATGCCCTCTCACAGCTCAGGACATGTTAGTCAGCTATTGCGTAGAGCTGCACTTTaGAGTAAGGCGACGACAGGA +
Preference number: 4 (lower is better)
Translates to: EGLLAMPSHSSGHVSQLLRRAAL*SKATTG
Trigger: TCCTGTCGTCGCCTTACTTCAAAGTGCAGCTCTACG...CAATAGCTGACTAACATGTCCTGAGCTGTGAGAGGGCATAGCAAGAAGGCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp AAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTGAAAACATCGGCAGCACATTGCCCTaGTTGCCCGACACCGCCGGC +
Preference number: 4 (lower is better)
Translates to: KMQEHSVHHVSTQQGENIGSTLP*LPDTAG
Trigger: GCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCTGCC...GATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CAA 72 bp ATCTTCTTGGAGACCTCCGTGGGCTCAGTGATCTTCTaGGAGATCTGGATCGCCGTCTCTCAACATGTCTGT +
Preference number: 4 (lower is better)
Translates to: IFLETSVGSVIF*EIWIAVSQHVC
Trigger: ACAGACATGTTGAGAGACGGCGATCCAGATCTCCAAGAAGATCACTGAGCCCACGGAGGTCTCCAAGAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CAA 72 bp TCCTTGCTTTCGTTTTTATGTCTGCTTGACTTGTCCTaGCTCCTGCTCCTGCTCCGCTTCCCTGCGTTTCTG +
Preference number: 4 (lower is better)
Translates to: SLLSFLCLLDLS*LLLLLRFPAFL
Trigger: CAGAAACGCAGGGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCAAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CAA 72 bp CTGTCTGACTGGTCCTTGCTATCATTATGCTCTCTCTaGTGGGAACGGTCTTGGCTCCTGCTGCGCTTTCTA +
Preference number: 4 (lower is better)
Translates to: LSDWSLLSLCSL*WERSWLLLRFL
Trigger: TAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp ATTATGAAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTGCACATTGCCCTGCTTaGCCGACACCGCCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: IMKSTAMLTSVHNHNLTPAHCPA*PTPPAW
Trigger: CCAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGC...AGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTTCATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp AACACAGCCTACGGGGAGCTCAGAGTGCATAACTACTGCACAATCTCAACTTGGCTAAGCCCCGATCAATaGTTCGGGATCTTCGCCTTT +
Preference number: 4 (lower is better)
Translates to: NTAYGELRVHNYCTISTWLSPDQ*FGIFAF
Trigger: AAAGGCGAAGATCCCGAAGCATTGATCGGGGCTTAG...CCAAGTTGAGATTGTGCAGTAGTTATGCACTCTGAGCTCCCCGTAGGCTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGGCTTCCCTGCGTTTCTaGTCCTGCTCCTGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: RNGITKALPYTKENTAYGASLRF*SCSCVS
Trigger: GGAAACACAGGAGCAGGAGCAGAAACGCAGGGAAGC...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp TTCTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGACTTGTCCTTGCTCCTaGTCCTGCTCCGCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: FSIIKCFGSLGLTAPLLLTCPCS*SCSASL
Trigger: CAGGGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGT...CAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CCA 90 bp TTTCGTTTTTATGTCTGCTTGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTTCCACTCCCCTTTTCCCATaGCTCAACATGCGTGACCTT +
Preference number: 4 (lower is better)
Translates to: FRFYVCLTCPCSCSCSASTPLFP*LNMRDL
Trigger: AAGGTCACGCATGTTGAGCCATGGGAAAAGGGGAGT...GGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
CDS-3UTR CCA 90 bp AACACAGCCTACGGGGAGCTCAGAGTGCATAACTACTGCACAATCTCAACTTGGTCCCGCTCTAGTCGTTaGCGTTCTTTCTCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: NTAYGELRVHNYCTISTWSRSSR*RSFSLS
Trigger: AGAGAGAGAGAAAGAACGCCAACGACTAGAGCGGGA...CCAAGTTGAGATTGTGCAGTAGTTATGCACTCTGAGCTCCCCGTAGGCTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR TCA 90 bp CCGATCCCTGTCTCTTCTATCCCCTTTCCTATCACGACTGCGACTGCGACTTCTAGTCTGTATGTGTTATaGGACCCATCACTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: PIPVSSIPFPITTATATSSLYVL*DPSLAF
Trigger: GAAAGCAAGTGATGGGTCTCATAACACATACAGACT...AGAAGTCGCAGTCGCAGTCGTGATAGGAAAGGGGATAGAAGAGACAGGGATCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
CDS-3UTR TCA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGCTTGGAGCGCTCTCTTaGTCTCTCTCTGTCCCTTTC +
Preference number: 4 (lower is better)
Translates to: RNGITKALPYTKENTAYGLGALS*SLSVPF
Trigger: GAAAGGGACAGAGAGAGATCAAGAGAGCGCTCCAAG...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp TTCTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGTCATGGTCTTCTCGTTaGCCCACAGCGGCAGCACAT +
Preference number: 4 (lower is better)
Translates to: FSIIKCFGSLGLTAPLLLSWSSR*PTAAAH
Trigger: ATGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGA...CAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
CDS-3UTR GCA 90 bp CAACACTGCCAGTTCTTCCTTGACTGCCACTTCTGCTTCTTTTATTTGCCTTCTTCATGGTCTTCTCGTTaGCCCACAGCGGCAGCACAT +
Preference number: 4 (lower is better)
Translates to: QHCQFFLDCHFCFFYLPSSWSSR*PTAAAH
Trigger: ATGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGA...AGAAGGCAAATAAAAGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAGTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CAA 72 bp TATTTGCCTTCTCCTTGCTTTCGTTTTTATGTCTGCTaGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTTCC +
Preference number: 4 (lower is better)
Translates to: YLPSPCFRFYVC*TCPCSCSCSAS
Trigger: GGAAGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCAAGGAGAAGGCAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
3UTR CAA 72 bp ATGCCCTCTCACAGCTCAGGACATGTTAGTCAGCTATaGTCAGTCCCAAACCTCCTCATCATCAAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: MPSHSSGHVSQL*SVPNLLIIKEG
Trigger: TCCTTCCTTGATGATGAGGAGGTTTGGGACTGACAATAGCTGACTAACATGTCCTGAGCTGTGAGAGGGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
CDS-3UTR TCA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACCCTCGTGGTAGGTCTTaGGCTCGTAGAGCTGCACTT +
Preference number: 4 (lower is better)
Translates to: MRNGITKALPYTKENTAYPRGRS*ARRAAL
Trigger: AAGTGCAGCTCTACGAGCTCAAGACCTACCACGAGG...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp CTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGCGCCCGGTGATGACTTCTaGTTCTTGATCTTCTTGGAG +
Preference number: 4 (lower is better)
Translates to: LHYKMLWKLRLDCSSAPAPGDDF*FLIFLE
Trigger: CTCCAAGAAGATCAAGAAGCAGAAGTCATCACCGGG...CGCAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp ATTATGAAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTCCTGCTCCGCTTCCCTaGGTTTCTGCTCCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: IMKSTAMLTSVHNHNLTPPAPLP*VSAPAP
Trigger: AGGAGCAGGAGCAGAAACGCAGGGAAGCGGAGCAGG...AGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTTCATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACTGCTTGACTTGTCCTTaGTCCTGCTCCTGCTCCGCT +
Preference number: 4 (lower is better)
Translates to: MRNGITKALPYTKENTAYCLTCP*SCSCSA
Trigger: AGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCA...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CCA 90 bp CTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGCGTTGTGTTCCTTTTCTTaGCTCTCTGGCTCTCCACTC +
Preference number: 4 (lower is better)
Translates to: LHYKMLWKLRLDCSSAPALCSFS*LSGSPL
Trigger: GAGTGGAGAGCCAGAGAGCCAAGAAAAGGAACACAA...CGCAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR TCA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACCGTAGAGCTGCACTTTaGAGTAAGGCGACGACAGGA +
Preference number: 4 (lower is better)
Translates to: MRNGITKALPYTKENTAYRRAAL*SKATTG
Trigger: TCCTGTCGTCGCCTTACTTCAAAGTGCAGCTCTACG...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR TCA 90 bp ATACAGTGGACAAGAATGTTAACCCTCCAACTGTTGCCTCCATGTATACTGAAAAGCCTCCACCAGCTTTaGCATCTAGGTCCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: IQWTRMLTLQLLPPCILKSLHQL*HLGPPH
Trigger: ATGAGGAGGACCTAGATGTCAAAGCTGGTGGAGGCT...TTTCAGTATACATGGAGGCAACAGTTGGAGGGTTAACATTCTTGTCCACTGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp TCTCACAGCTCAGGACATGTTAGTCAGCTATTGTCAGTCCCAAACCTCCTCATCATGAGACCCATCACTTaGTTTCGAGTTAACTTCAGG +
Preference number: 4 (lower is better)
Translates to: SHSSGHVSQLLSVPNLLIMRPIT*FRVNFR
Trigger: CCTGAAGTTAACTCGAAAGCAAGTGATGGGTCTCAT...GATGAGGAGGTTTGGGACTGACAATAGCTGACTAACATGTCCTGAGCTGTGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp ATACAGTGGACAAGAATGTTAACCCTCCAACTGTTGCCTCCATGTATACTGAAACTGCGTTTCTGCTCCTaGTCCTGTGTTTCCTCTCTC +
Preference number: 4 (lower is better)
Translates to: IQWTRMLTLQLLPPCILKLRFCS*SCVSSL
Trigger: GAGAGAGGAAACACAGGAGCAGGAGCAGAAACGCAG...TTTCAGTATACATGGAGGCAACAGTTGGAGGGTTAACATTCTTGTCCACTGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CCA 90 bp AACACAGCCTACGGGGAGCTCAGAGTGCATAACTACTGCACAATCTCAACTTGGAGGTCTGTAGGGGGTTaGGTATACCTTATATACATA +
Preference number: 4 (lower is better)
Translates to: NTAYGELRVHNYCTISTWRSVGG*VYLIYI
Trigger: TATGTATATAAGGTATACCCAACCCCCTACAGACCT...CCAAGTTGAGATTGTGCAGTAGTTATGCACTCTGAGCTCCCCGTAGGCTGTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029480.9
ENSMUST00000199735.5
CDS-3UTR GCA 90 bp AACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGACGTATGTACTTTCCTATCACGACTaGGACTGCGACTTCTGTGCC +
Preference number: 4 (lower is better)
Translates to: NQHGNHAKGIKTFSRTYVLSYHD*DCDFCA
Trigger: GGCACAGAAGTCGCAGTCGCAGTCGTGATAGGAAAG...TACATACGTCCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAATCACCCCTACTTCTCTaGTCCTTGGAGCGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKSPLLL*SLERSL
Trigger: AAGAGAGCGCTCCAAGGAGCAGAGAAGTAGGGGTGA...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACTGTGTTTCCTCTCTCTaGTCCTGCTTCTGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: MRNGITKALPYTKENTAYCVSSL*SCFCCV
Trigger: AACACAGCAGAAGCAGGAGCAGAGAGAGGAAACACA...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CCA 90 bp AACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGACGTATGTATTGTGGGAACGGTCTTaGCTCCTGCTGCGCTTTCTA +
Preference number: 4 (lower is better)
Translates to: NQHGNHAKGIKTFSRTYVLWERS*LLLRFL
Trigger: TAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAA...TACATACGTCCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR TCA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGTTTTTATGTCTGCTTaGCTTGTCCTTGCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: MRNGITKALPYTKENTAYVFMSA*LVLAPA
Trigger: AGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAAC...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR TCA 90 bp ATTATGAAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTCTGCCAGTTCTTCCTTaGCTGCCACTTCTGCTTCTT +
Preference number: 4 (lower is better)
Translates to: IMKSTAMLTSVHNHNLTPLPVLP*LPLLLL
Trigger: AAGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAG...AGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTTCATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CCA 90 bp ATTATGAAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACTCCCCTTTTCCCATaGCTCAACATGCGTGACCTT +
Preference number: 4 (lower is better)
Translates to: IMKSTAMLTSVHNHNLTPTPLFP*LNMRDL
Trigger: AAGGTCACGCATGTTGAGCCATGGGAAAAGGGGAGT...AGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTTCATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029480.9
ENSMUST00000199735.5
CDS-3UTR CCA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAATTATGCTCTCTCTTGTaGGAACGGTCTTGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKLCSLL*ERSWLL
Trigger: CAGGAGCCAAGACCGTTCCCACAAGAGAGAGCATAA...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR TCA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAAATGACTTCTGCTTCTTaGTCTTCTTGGAGACCTCCG +
Preference number: 4 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKMTSAS*SSWRPP
Trigger: CGGAGGTCTCCAAGAAGATCAAGAAGCAGAAGTCAT...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACATGAGACCCATCACTTaGTTTCGAGTTAACTTCAGG +
Preference number: 4 (lower is better)
Translates to: MRNGITKALPYTKENTAYMRPIT*FRVNFR
Trigger: CCTGAAGTTAACTCGAAAGCAAGTGATGGGTCTCAT...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029480.9
ENSMUST00000199735.5
CDS-3UTR CCA 90 bp AAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTGAAAACATCGAAGCATCTCTCCAATaGTCATTACACAGCCTCCAC +
Preference number: 4 (lower is better)
Translates to: KMQEHSVHHVSTQQGENIEASLQ*SLHSLH
Trigger: GTGGAGGCTGTGTAATGACCATTGGAGAGATGCTTC...GATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CCA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAATACTTCTCTGCTCCTTaGAGCGCTCTCTTGATCTCT +
Preference number: 4 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKYFSAP*SALLIS
Trigger: AGAGATCAAGAGAGCGCTCCAAGGAGCAGAGAAGTA...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR TCA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAAATGATCCTGTCTGTCTaGCTGGTCCTTGCTATCATT +
Preference number: 4 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKMILSV*LVLAII
Trigger: AATGATAGCAAGGACCAGTCAGACAGACAGGATCAT...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp AAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTGAAAACATCTCCTTGCTATCATTATaGTCTCTCTTGTGGGAACGG +
Preference number: 4 (lower is better)
Translates to: KMQEHSVHHVSTQQGENISLLSL*SLLWER
Trigger: CCGTTCCCACAAGAGAGAGCATAATGATAGCAAGGA...GATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR TCA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAAAGTCTGTATGTGTTATaGGACCCATCACTTGCTTTC +
Preference number: 4 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKSLYVL*DPSLAF
Trigger: GAAAGCAAGTGATGGGTCTCATAACACATACAGACT...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029480.9
ENSMUST00000199735.5
CDS-3UTR TCA 90 bp ATACAGTGGACAAGAATGTTAACCCTCCAACTGTTGCCTCCATGTATACTGAAACGAGTTTTAATCTGCTaGTCAATGTTCTTCTGGACT +
Preference number: 4 (lower is better)
Translates to: IQWTRMLTLQLLPPCILKRVLIC*SMFFWT
Trigger: AGTCCAGAAGAACATTGATCAGCAGATTAAAACTCG...TTTCAGTATACATGGAGGCAACAGTTGGAGGGTTAACATTCTTGTCCACTGTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp TACAAATTTAACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGCCCTTTCTCGGTCACTaGCTCTCTCCTTGTCATAAT +
Preference number: 4 (lower is better)
Translates to: YKFNQHGNHAKGIKTFSRPFLGH*LSPCHN
Trigger: ATTATGACAAGGAGAGAGGCAGTGACCGAGAAAGGG...CCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTTAAATTTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAATGTCTGACTGGTCCTTaGTATCATTATGCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKCLTGP*YHYALS
Trigger: AGAGAGAGCATAATGATAGCAAGGACCAGTCAGACA...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR GCA 90 bp AAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTGAAAACATCCTTGACTGCCACTTCTaGTTCTTTTATTTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: KMQEHSVHHVSTQQGENILDCHF*FFYLPS
Trigger: AGAAGGCAAATAAAAGAAGCAGAAGTGGCAGTCAAG...GATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CCA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACTGGAACTGGAATTCTTaGAAACAAAGTAGAAAACCA +
Preference number: 4 (lower is better)
Translates to: MRNGITKALPYTKENTAYWNWNS*KQSRKP
Trigger: TGGTTTTCTACTTTGTTTCCAAGAATTCCAGTTCCA...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR TCA 90 bp TACAAATTTAACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGACCATTCCAGTTTTGTaGGAAAAGAACGAAGCATCT +
Preference number: 4 (lower is better)
Translates to: YKFNQHGNHAKGIKTFSRTIPVL*EKNEAS
Trigger: AGATGCTTCGTTCTTTTCTCACAAAACTGGAATGGT...CCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTTAAATTTGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS CCA 90 bp GCCGGCTTGGTGGCGCCGCCGCCGCCGCCACATTGCTGCTGCTGCTaGGTCACGGCCGCGGCCGCCTGGTGCTGCGGTTGCGAGTTGCCG +
Preference number: 5 (lower is better)
Translates to: AGLVAPPPPPHCCCC*VTAAAAWCCGCELP
Trigger: CGGCAACTCGCAACCGCAGCACCAGGCGGCCGCGGCCGTGACCCAGCAGCAGCAGCAATGTGGCGGCGGCGGCGGCGCCACCAAGCCGGC
77% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp CACGACTGCGACTGCGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTGCGATTTCATGGTCTTCTCGTaGCCCCACAGCGGCAGCACA +
Preference number: 5 (lower is better)
Translates to: HDCDCDFCASPDCGFACDFMVFS*PHSGST
Trigger: TGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGAA...ATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp ATGCTCTCTCTTGTGGGAACGGTCTTGGCTCCTGCTGCGCTTTCTAGACTTCTCCACAGCGGCAGCACATaGCCCTGCTTGCCCGACACC +
Preference number: 5 (lower is better)
Translates to: MLSLVGTVLAPAALSRLLHSGST*PCLPDT
Trigger: GGTGTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTG...GAGAAGTCTAGAAAGCGCAGCAGGAGCCAAGACCGTTCCCACAAGAGAGAGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp GATGATCCTGTCTGTCTGACTGGTCCTTGCTATCATTATGCTCTCTCTTGTGGGGCCGCCGCCGCCACATaGCTGCTGCTGCTGGGTCAC +
Preference number: 5 (lower is better)
Translates to: DDPVCLTGPCYHYALSCGAAAAT*LLLLGH
Trigger: GTGACCCAGCAGCAGCAGCAATGTGGCGGCGGCGGC...CCCACAAGAGAGAGCATAATGATAGCAAGGACCAGTCAGACAGACAGGATCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp AAAGAACGAAGCATCTCTCCAATGGTCATTACACAGCCTCCACCAGCTTTGACATGCTGCGGTTGCGAGTaGCCGGTCAGCGCGGGGCTG +
Preference number: 5 (lower is better)
Translates to: KERSISPMVITQPPPALTCCGCE*PVSAGL
Trigger: CAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGCA...TGTCAAAGCTGGTGGAGGCTGTGTAATGACCATTGGAGAGATGCTTCGTTCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp TGCTTTCGTTTTTATGTCTGCTTGACTTGTCCTTGCTCCTGCTCCTGCTCCGCTAGCACATTGCCCTGCTaGCCCGACACCGCCGGCTTG +
Preference number: 5 (lower is better)
Translates to: CFRFYVCLTCPCSCSCSASTLPC*PDTAGL
Trigger: CAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCT...AGCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACGAAAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp CTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGCGCACAGCGGCAGCACATaGCCCTGCTTGCCCGACACC +
Preference number: 5 (lower is better)
Translates to: LHYKMLWKLRLDCSSAPAHSGST*PCLPDT
Trigger: GGTGTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTG...CGCAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
CDS-3UTR CAA 90 bp GACTGCGACTGCGACTTCTGTGCCTCTCCCGACTGCGGCTTCGCCTGCGATCTACAGGTCTGTAGGGGGTaGGGTATACCTTATATACAT +
Preference number: 5 (lower is better)
Translates to: DCDCDFCASPDCGFACDLQVCRG*GIPYIH
Trigger: ATGTATATAAGGTATACCCAACCCCCTACAGACCTG...TAGATCGCAGGCGAAGCCGCAGTCGGGAGAGGCACAGAAGTCGCAGTCGCAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAATGCTGCGGTTGCGAGTaGCCGGTCAGCGCGGGGCTG +
Preference number: 5 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKCCGCE*PVSAGL
Trigger: CAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGCA...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp AAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTGAAAACATCTGCTGCGGTTGCGAGTaGCCGGTCAGCGCGGGGCTG +
Preference number: 5 (lower is better)
Translates to: KMQEHSVHHVSTQQGENICCGCE*PVSAGL
Trigger: CAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGCA...GATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp ATTATGAAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTGCCGCCGCCGCCACATaGCTGCTGCTGCTGGGTCAC +
Preference number: 5 (lower is better)
Translates to: IMKSTAMLTSVHNHNLTPAAAAT*LLLLGH
Trigger: GTGACCCAGCAGCAGCAGCAATGTGGCGGCGGCGGC...AGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTTCATAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGCTGCTTGACTTGTCCTaGCTCCTGCTCCTGCTCCGC +
Preference number: 5 (lower is better)
Translates to: RNGITKALPYTKENTAYGLLDLS*LLLLLR
Trigger: GCGGAGCAGGAGCAGGAGCAAGGACAAGTCAAGCAG...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp TCGAGTTTTAATCTGCTGATCAATGTTCTTCTGGACTGGAACTGGAATTCTTGGAGCACATTGCCCTGCTaGCCCGACACCGCCGGCTTG +
Preference number: 5 (lower is better)
Translates to: SSFNLLINVLLDWNWNSWSTLPC*PDTAGL
Trigger: CAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCT...CCAAGAATTCCAGTTCCAGTCCAGAAGAACATTGATCAGCAGATTAAAACTCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp TCTTCTTGGAGATCTGGATCGCCGTCTCTCAACATGTCTGTCTATCTCCTCAATTTCATGGTCTTCTCGTaGCCCCACAGCGGCAGCACA +
Preference number: 5 (lower is better)
Translates to: SSWRSGSPSLNMSVYLLNFMVFS*PHSGST
Trigger: TGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGAA...ATTGAGGAGATAGACAGACATGTTGAGAGACGGCGATCCAGATCTCCAAGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAAAGCACATTGCCCTGCTaGCCCGACACCGCCGGCTTG +
Preference number: 5 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKSTLPC*PDTAGL
Trigger: CAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCT...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp AACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGACGTATGTACACAGCGGCAGCACATaGCCCTGCTTGCCCGACACC +
Preference number: 5 (lower is better)
Translates to: NQHGNHAKGIKTFSRTYVHSGST*PCLPDT
Trigger: GGTGTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTG...TACATACGTCCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp TTCTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGTTCATGGTCTTCTCGTaGCCCCACAGCGGCAGCACA +
Preference number: 5 (lower is better)
Translates to: FSIIKCFGSLGLTAPLLLFMVFS*PHSGST
Trigger: TGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGAA...CAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
CDS-3UTR CAA 90 bp CTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGCGCTACTTCTCTGCTCCTaGGAGCGCTCTCTTGATCTC +
Preference number: 5 (lower is better)
Translates to: LHYKMLWKLRLDCSSAPALLLCS*ERSLDL
Trigger: GAGATCAAGAGAGCGCTCCAAGGAGCAGAGAAGTAG...CGCAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp AACACAGCCTACGGGGAGCTCAGAGTGCATAACTACTGCACAATCTCAACTTGGTTATGTCTGCTTGACTaGTCCTTGCTCCTGCTCCTG +
Preference number: 5 (lower is better)
Translates to: NTAYGELRVHNYCTISTWLCLLD*SLLLLL
Trigger: CAGGAGCAGGAGCAAGGACAAGTCAAGCAGACATAA...CCAAGTTGAGATTGTGCAGTAGTTATGCACTCTGAGCTCCCCGTAGGCTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGCGACGACAGGATGTaGGTGAGGATCATGGGGTTG +
Preference number: 5 (lower is better)
Translates to: MRNGITKALPYTKENTAYGDDRM*VRIMGL
Trigger: CAACCCCATGATCCTCACCAACATCCTGTCGTCGCC...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGCCTTGGAGCGCTCTCTaGATCTCTCTCTGTCCCTTT +
Preference number: 5 (lower is better)
Translates to: RNGITKALPYTKENTAYGPWSAL*ISLCPF
Trigger: AAAGGGACAGAGAGAGATCAAGAGAGCGCTCCAAGG...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp AACACAGCCTACGGGGAGCTCAGAGTGCATAACTACTGCACAATCTCAACTTGGTGTCGTCTGTCCTCCTaGTCTTCTTTGTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: NTAYGELRVHNYCTISTWCRLSS*SSLCFF
Trigger: GAAGAAGCACAAAGAAGACAAGGAGGACAGACGACA...CCAAGTTGAGATTGTGCAGTAGTTATGCACTCTGAGCTCCCCGTAGGCTGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp CTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGCGGATGACTTCTGCTTCTaGATCTTCTTGGAGACCTCC +
Preference number: 5 (lower is better)
Translates to: LHYKMLWKLRLDCSSAPADDFCF*IFLETS
Trigger: GGAGGTCTCCAAGAAGATCAAGAAGCAGAAGTCATC...CGCAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp ATGCGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGTGAGGATCATGGGGTaGAGGTTCATGGTCTTCTCG +
Preference number: 5 (lower is better)
Translates to: MRNGITKALPYTKENTAYVRIMG*RFMVFS
Trigger: CGAGAAGACCATGAACCTCAACCCCATGATCCTCAC...GTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp AACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGACGTATGTAGGCGACGACAGGATGTaGGTGAGGATCATGGGGTTG +
Preference number: 5 (lower is better)
Translates to: NQHGNHAKGIKTFSRTYVGDDRM*VRIMGL
Trigger: CAACCCCATGATCCTCACCAACATCCTGTCGTCGCC...TACATACGTCCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp TTCTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGTCATTATGCTCTCTCTaGTGGGAACGGTCTTGGCTC +
Preference number: 5 (lower is better)
Translates to: FSIIKCFGSLGLTAPLLLSLCSL*WERSWL
Trigger: GAGCCAAGACCGTTCCCACAAGAGAGAGCATAATGA...CAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp ATACAGTGGACAAGAATGTTAACCCTCCAACTGTTGCCTCCATGTATACTGAAAGTGAGGATCATGGGGTaGAGGTTCATGGTCTTCTCG +
Preference number: 5 (lower is better)
Translates to: IQWTRMLTLQLLPPCILKVRIMG*RFMVFS
Trigger: CGAGAAGACCATGAACCTCAACCCCATGATCCTCAC...TTTCAGTATACATGGAGGCAACAGTTGGAGGGTTAACATTCTTGTCCACTGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS-3UTR CAA 90 bp AAAAGCACAGCCATGCTAACTTCAGTACACAACCATAATCTCACACCTACAAAACAGCCTCCACCAGCTTaGACATCTAGGTCCTCCTCA +
Preference number: 5 (lower is better)
Translates to: KSTAMLTSVHNHNLTPTKQPPPA*TSRSSS
Trigger: TGAGGAGGACCTAGATGTCAAAGCTGGTGGAGGCTG...TTTTGTAGGTGTGAGATTATGGTTGTGTACTGAAGTTAGCATGGCTGTGCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp TTCTCCATTATAAAATGCTTTGGAAGCTTAGGCTTGACTGCTCCTCTGCTCCTGCTGTCTGACTGGTCCTaGCTATCATTATGCTCTCTC +
Preference number: 5 (lower is better)
Translates to: FSIIKCFGSLGLTAPLLLLSDWS*LSLCSL
Trigger: GAGAGAGCATAATGATAGCAAGGACCAGTCAGACAG...CAGGAGCAGAGGAGCAGTCAAGCCTAAGCTTCCAAAGCATTTTATAATGGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp CGTAATGGGATTACAAAGGCACTTCCCTACACAAAAGAAAACACAGCCTACGGGTTCTTGGACTCTTTTTaGTCATCTCTGTGTCGTCTG +
Preference number: 5 (lower is better)
Translates to: RNGITKALPYTKENTAYGFLDSF*SSLCRL
Trigger: CAGACGACACAGAGATGACAAAAAAGAGTCCAAGAA...CCCGTAGGCTGTGTTTTCTTTTGTGTAGGGAAGTGCCTTTGTAATCCCATTACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp AAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTGAAAACATCACTGCCAGTTCTTCCTaGACTGCCACTTCTGCTTCT +
Preference number: 5 (lower is better)
Translates to: KMQEHSVHHVSTQQGENITASSS*TATSAS
Trigger: AGAAGCAGAAGTGGCAGTCAAGGAAGAACTGGCAGT...GATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp AAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTGAAAACATCCGTTTTTATGTCTGCTaGACTTGTCCTTGCTCCTGC +
Preference number: 5 (lower is better)
Translates to: KMQEHSVHHVSTQQGENIRFYVC*TCPCSC
Trigger: GCAGGAGCAAGGACAAGTCAAGCAGACATAAAAACG...GATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp AAAATGCAAGAACATTCTGTGCATCATGTGTCAACTCAACAGGGTGAAAACATCTTTGTGTTCCTTTTCTaGGCTCTCTGGCTCTCCACT +
Preference number: 5 (lower is better)
Translates to: KMQEHSVHHVSTQQGENIFVFLF*ALWLST
Trigger: AGTGGAGAGCCAGAGAGCCAAGAAAAGGAACACAAA...GATGTTTTCACCCTGTTGAGTTGACACATGATGCACAGAATGTTCTTGCATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029480.9
CDS-3UTR CAA 90 bp TACAAATTTAACCAACATGGCAACCATGCCAAAGGAATTAAAACATTTTCCAGGCAGGTCTGTAGGGGGTaGGGTATACCTTATATACAT +
Preference number: 5 (lower is better)
Translates to: YKFNQHGNHAKGIKTFSRQVCRG*GIPYIH
Trigger: ATGTATATAAGGTATACCCAACCCCCTACAGACCTG...CCTGGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTTAAATTTGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029480.9
ENSMUST00000199735.5
CDS GCA 72 bp TTGGTGGCGCCGCCGCCGCCGCCACATTGCTGCTGCTaGTGGGTCACGGCCGCGGCCGCCTGGTGCTGCGGT +
Preference number: 6 (lower is better)
Translates to: LVAPPPPPHCCC*WVTAAAAWCCG
Trigger: ACCGCAGCACCAGGCGGCCGCGGCCGTGACCCAGCAGCAGCAGCAATGTGGCGGCGGCGGCGGCGCCACCAA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS GCA 72 bp TGCTGCTGCTGCTGGGTCACGGCCGCGGCCGCCTGGTaGTGCGGTTGCGAGTTGCCGGTCAGCGCGGGGCTG +
Preference number: 6 (lower is better)
Translates to: CCCCWVTAAAAW*CGCELPVSAGL
Trigger: CAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGCACCAGGCGGCCGCGGCCGTGACCCAGCAGCAGCAGCA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS GCA 72 bp TGCTGGGTCACGGCCGCGGCCGCCTGGTGCTGCGGTTaGGAGTTGCCGGTCAGCGCGGGGCTGTTGTTGGCC +
Preference number: 6 (lower is better)
Translates to: CWVTAAAAWCCG*ELPVSAGLLLA
Trigger: GGCCAACAACAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGCACCAGGCGGCCGCGGCCGTGACCCAGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS GCA 72 bp TGCTGCTGCTGGGTCACGGCCGCGGCCGCCTGGTGCTaGGGTTGCGAGTTGCCGGTCAGCGCGGGGCTGTTG +
Preference number: 6 (lower is better)
Translates to: CCCWVTAAAAWC*GCELPVSAGLL
Trigger: CAACAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGCACCAGGCGGCCGCGGCCGTGACCCAGCAGCAGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS CAA 72 bp CTGCTGGGTCACGGCCGCGGCCGCCTGGTGCTGCGGTaGCGAGTTGCCGGTCAGCGCGGGGCTGTTGTTGGC +
Preference number: 6 (lower is better)
Translates to: LLGHGRGRLVLR*RVAGQRGAVVG
Trigger: GCCAACAACAGCCCCGCGCTGACCGGCAACTCGCAACCGCAGCACCAGGCGGCCGCGGCCGTGACCCAGCAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS CAA 72 bp TTCTCGTTGCCCCACAGCGGCAGCACATTGCCCTGCTaGCCCGACACCGCCGGCTTGGTGGCGCCGCCGCCG +
Preference number: 6 (lower is better)
Translates to: FSLPHSGSTLPC*PDTAGLVAPPP
Trigger: CGGCGGCGGCGCCACCAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTGGGGCAACGAGAA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS GCA 72 bp GTCTTCTCGTTGCCCCACAGCGGCAGCACATTGCCCTaGTTGCCCGACACCGCCGGCTTGGTGGCGCCGCCG +
Preference number: 6 (lower is better)
Translates to: VFSLPHSGSTLP*LPDTAGLVAPP
Trigger: CGGCGGCGCCACCAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTGGGGCAACGAGAAGAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS CAA 90 bp GGGTTGAGGTTCATGGTCTTCTCGTTGCCCCACAGCGGCAGCACATaGCCCTGCTTGCCCGACACCGCCGGCTTGGTGGCGCCGCCGCCG +
Preference number: 6 (lower is better)
Translates to: GLRFMVFSLPHSGST*PCLPDTAGLVAPPP
Trigger: CGGCGGCGGCGCCACCAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGAACCTCAACCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS GCA 72 bp TCATGGTCTTCTCGTTGCCCCACAGCGGCAGCACATTaGCCTGCTTGCCCGACACCGCCGGCTTGGTGGCGC +
Preference number: 6 (lower is better)
Translates to: SWSSRCPTAAAH*PACPTPPAWWR
Trigger: GCGCCACCAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS CAA 72 bp TTCATGGTCTTCTCGTTGCCCCACAGCGGCAGCACATaGCCCTGCTTGCCCGACACCGCCGGCTTGGTGGCG +
Preference number: 6 (lower is better)
Translates to: FMVFSLPHSGST*PCLPDTAGLVA
Trigger: CGCCACCAAGCCGGCGGTGTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5
CDS CAA 90 bp AGGATGTTGGTGAGGATCATGGGGTTGAGGTTCATGGTCTTCTCGTaGCCCCACAGCGGCAGCACATTGCCCTGCTTGCCCGACACCGCC +
Preference number: 6 (lower is better)
Translates to: RMLVRIMGLRFMVFS*PHSGSTLPCLPDTA
Trigger: GGCGGTGTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTGGGGCAACGAGAAGACCATGAACCTCAACCCCATGATCCTCACCAACATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029480.9
ENSMUST00000129273.8
ENSMUST00000199735.5