Pregenerated sensors for PRPF38A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063800Ensembl transcript IDs: ENSMUST00000079213.6
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CAA 90 bp | AATGAAAGGATCACATCTTTTTACCTCTCAAATTCCCAGGTCTTCTaGACCCTGCTAAGTATGAATAACCATAGTGGGTTAGGCCAAAAC | + |
Preference number: 2 (lower is better) Translates to: NERITSFYLSNSQVF*TLLSMNNHSGLGQN Trigger: GTTTTGGCCTAACCCACTATGGTTATTCATACTTAGCAGGGTCAAGAAGACCTGGGAATTTGAGAGGTAAAAAGATGTGATCCTTTCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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3UTR CAA 90 bp | CTGCTAAGTATGAATAACCATAGTGGGTTAGGCCAAAACTTGACCTaGATTTGGTCAAAAACACTCTTCAAAGCTGTTGGTTATAATCCA | + |
Preference number: 2 (lower is better) Translates to: LLSMNNHSGLGQNLT*IWSKTLFKAVGYNP Trigger: TGGATTATAACCAACAGCTTTGAAGAGTGTTTTTGACCAAATCAAGGTCAAGTTTTGGCCTAACCCACTATGGTTATTCATACTTAGCAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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CDS-3UTR TCA 90 bp | CAGGTCTTCTTGACCCTGCTAAGTATGAATAACCATAGTGGGTTAGGCCAAAACGTAGCGCAGTGCAGGTaGACGCCTTGGCTTGTCCAA | + |
Preference number: 4 (lower is better) Translates to: QVFLTLLSMNNHSGLGQNVAQCR*TPWLVQ Trigger: TTGGACAAGCCAAGGCGTTCACCTGCACTGCGCTAC...GTTTTGGCCTAACCCACTATGGTTATTCATACTTAGCAGGGTCAAGAAGACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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CDS-3UTR CCA 90 bp | CAGGTCTTCTTGACCCTGCTAAGTATGAATAACCATAGTGGGTTAGGCCAAAACCTAGACCTGCTCCGATaGCGTCGTGGACTCTTGCTC | + |
Preference number: 4 (lower is better) Translates to: QVFLTLLSMNNHSGLGQNLDLLR*RRGLLL Trigger: GAGCAAGAGTCCACGACGCCATCGGAGCAGGTCTAG...GTTTTGGCCTAACCCACTATGGTTATTCATACTTAGCAGGGTCAAGAAGACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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CDS-3UTR CCA 90 bp | GATCACATCTTTTTACCTCTCAAATTCCCAGGTCTTCTTGACCCTGCTAAGTATGCTCCGATGGCGTCGTaGACTCTTGCTCCTATGCCT | + |
Preference number: 4 (lower is better) Translates to: DHIFLPLKFPGLLDPAKYAPMAS*TLAPMP Trigger: AGGCATAGGAGCAAGAGTCCACGACGCCATCGGAGC...ATACTTAGCAGGGTCAAGAAGACCTGGGAATTTGAGAGGTAAAAAGATGTGATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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CDS-3UTR TCA 90 bp | CACTTAAACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGTCAAGACCTTTCAGGAGACTTTaGGTGGCTTCTATGTCTGTG | + |
Preference number: 4 (lower is better) Translates to: HLNRCSHSHRRSFGPKSRPFRRL*VASMSV Trigger: CACAGACATAGAAGCCACTCAAAGTCTCCTGAAAGG...TCTTGACTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGTTTAAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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CDS-3UTR GCA 90 bp | GATCACATCTTTTTACCTCTCAAATTCCCAGGTCTTCTTGACCCTGCTAAGTATGGACTCTTGCTCCTATaGCTTTCTCTTCGGGGAGAA | + |
Preference number: 4 (lower is better) Translates to: DHIFLPLKFPGLLDPAKYGLLLL*LSLRGE Trigger: TTCTCCCCGAAGAGAAAGGCATAGGAGCAAGAGTCC...ATACTTAGCAGGGTCAAGAAGACCTGGGAATTTGAGAGGTAAAAAGATGTGATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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CDS-3UTR TCA 90 bp | CACTTAAACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGTCAAGAGCAGGAGTTCATAAATaGACTCATCTACATGCATCA | + |
Preference number: 4 (lower is better) Translates to: HLNRCSHSHRRSFGPKSRAGVHK*THLHAS Trigger: TGATGCATGTAGATGAGTTCATTTATGAACTCCTGC...TCTTGACTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGTTTAAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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CDS-3UTR CCA 90 bp | TCATTCCACTTAAACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGCGAACTTTAACTCCATaGCTTTGTCCACTACAAGTT | + |
Preference number: 4 (lower is better) Translates to: SFHLNRCSHSHRRSFGPKRTLTP*LCPLQV Trigger: AACTTGTAGTGGACAAAGCCATGGAGTTAAAGTTCG...CTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGTTTAAGTGGAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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3UTR CAA 72 bp | ATGAATAACCATAGTGGGTTAGGCCAAAACTTGACCTaGATTTGGTCAAAAACACTCTTCAAAGCTGTTGGT | + |
Preference number: 4 (lower is better) Translates to: MNNHSGLGQNLT*IWSKTLFKAVG Trigger: ACCAACAGCTTTGAAGAGTGTTTTTGACCAAATCAAGGTCAAGTTTTGGCCTAACCCACTATGGTTATTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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3UTR CAA 72 bp | ATCACATCTTTTTACCTCTCAAATTCCCAGGTCTTCTaGACCCTGCTAAGTATGAATAACCATAGTGGGTTA | + |
Preference number: 4 (lower is better) Translates to: ITSFYLSNSQVF*TLLSMNNHSGL Trigger: TAACCCACTATGGTTATTCATACTTAGCAGGGTCAAGAAGACCTGGGAATTTGAGAGGTAAAAAGATGTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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3UTR CAA 72 bp | CTAAGTATGAATAACCATAGTGGGTTAGGCCAAAACTaGACCTTGATTTGGTCAAAAACACTCTTCAAAGCT | + |
Preference number: 4 (lower is better) Translates to: LSMNNHSGLGQN*TLIWSKTLFKA Trigger: AGCTTTGAAGAGTGTTTTTGACCAAATCAAGGTCAAGTTTTGGCCTAACCCACTATGGTTATTCATACTTAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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CDS-3UTR CAA 90 bp | CACTTAAACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGTCAAGAAACTCGAGGCTCCAGTaGCTCAGCTTCTTCCAGCAC | + |
Preference number: 5 (lower is better) Translates to: HLNRCSHSHRRSFGPKSRNSRLQ*LSFFQH Trigger: GTGCTGGAAGAAGCTGAGCAACTGGAGCCTCGAGTT...TCTTGACTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGTTTAAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |
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CDS-3UTR CAA 90 bp | ACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGTCAAGATGCATCCACCTTTCAGGAGACTTaGAGTGGCTTCTATGTCTGT | + |
Preference number: 5 (lower is better) Translates to: TDALIATGGHLDQSQDASTFQET*SGFYVC Trigger: ACAGACATAGAAGCCACTCAAAGTCTCCTGAAAGGT...GGATGCATCTTGACTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079213.6 |