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Pregenerated sensors for PRPF38A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063800

Ensembl transcript IDs: ENSMUST00000079213.6

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp AATGAAAGGATCACATCTTTTTACCTCTCAAATTCCCAGGTCTTCTaGACCCTGCTAAGTATGAATAACCATAGTGGGTTAGGCCAAAAC +
Preference number: 2 (lower is better)
Translates to: NERITSFYLSNSQVF*TLLSMNNHSGLGQN
Trigger: GTTTTGGCCTAACCCACTATGGTTATTCATACTTAGCAGGGTCAAGAAGACCTGGGAATTTGAGAGGTAAAAAGATGTGATCCTTTCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
3UTR CAA 90 bp CTGCTAAGTATGAATAACCATAGTGGGTTAGGCCAAAACTTGACCTaGATTTGGTCAAAAACACTCTTCAAAGCTGTTGGTTATAATCCA +
Preference number: 2 (lower is better)
Translates to: LLSMNNHSGLGQNLT*IWSKTLFKAVGYNP
Trigger: TGGATTATAACCAACAGCTTTGAAGAGTGTTTTTGACCAAATCAAGGTCAAGTTTTGGCCTAACCCACTATGGTTATTCATACTTAGCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
CDS-3UTR TCA 90 bp CAGGTCTTCTTGACCCTGCTAAGTATGAATAACCATAGTGGGTTAGGCCAAAACGTAGCGCAGTGCAGGTaGACGCCTTGGCTTGTCCAA +
Preference number: 4 (lower is better)
Translates to: QVFLTLLSMNNHSGLGQNVAQCR*TPWLVQ
Trigger: TTGGACAAGCCAAGGCGTTCACCTGCACTGCGCTAC...GTTTTGGCCTAACCCACTATGGTTATTCATACTTAGCAGGGTCAAGAAGACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
CDS-3UTR CCA 90 bp CAGGTCTTCTTGACCCTGCTAAGTATGAATAACCATAGTGGGTTAGGCCAAAACCTAGACCTGCTCCGATaGCGTCGTGGACTCTTGCTC +
Preference number: 4 (lower is better)
Translates to: QVFLTLLSMNNHSGLGQNLDLLR*RRGLLL
Trigger: GAGCAAGAGTCCACGACGCCATCGGAGCAGGTCTAG...GTTTTGGCCTAACCCACTATGGTTATTCATACTTAGCAGGGTCAAGAAGACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
CDS-3UTR CCA 90 bp GATCACATCTTTTTACCTCTCAAATTCCCAGGTCTTCTTGACCCTGCTAAGTATGCTCCGATGGCGTCGTaGACTCTTGCTCCTATGCCT +
Preference number: 4 (lower is better)
Translates to: DHIFLPLKFPGLLDPAKYAPMAS*TLAPMP
Trigger: AGGCATAGGAGCAAGAGTCCACGACGCCATCGGAGC...ATACTTAGCAGGGTCAAGAAGACCTGGGAATTTGAGAGGTAAAAAGATGTGATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
CDS-3UTR TCA 90 bp CACTTAAACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGTCAAGACCTTTCAGGAGACTTTaGGTGGCTTCTATGTCTGTG +
Preference number: 4 (lower is better)
Translates to: HLNRCSHSHRRSFGPKSRPFRRL*VASMSV
Trigger: CACAGACATAGAAGCCACTCAAAGTCTCCTGAAAGG...TCTTGACTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGTTTAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
CDS-3UTR GCA 90 bp GATCACATCTTTTTACCTCTCAAATTCCCAGGTCTTCTTGACCCTGCTAAGTATGGACTCTTGCTCCTATaGCTTTCTCTTCGGGGAGAA +
Preference number: 4 (lower is better)
Translates to: DHIFLPLKFPGLLDPAKYGLLLL*LSLRGE
Trigger: TTCTCCCCGAAGAGAAAGGCATAGGAGCAAGAGTCC...ATACTTAGCAGGGTCAAGAAGACCTGGGAATTTGAGAGGTAAAAAGATGTGATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
CDS-3UTR TCA 90 bp CACTTAAACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGTCAAGAGCAGGAGTTCATAAATaGACTCATCTACATGCATCA +
Preference number: 4 (lower is better)
Translates to: HLNRCSHSHRRSFGPKSRAGVHK*THLHAS
Trigger: TGATGCATGTAGATGAGTTCATTTATGAACTCCTGC...TCTTGACTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGTTTAAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
CDS-3UTR CCA 90 bp TCATTCCACTTAAACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGCGAACTTTAACTCCATaGCTTTGTCCACTACAAGTT +
Preference number: 4 (lower is better)
Translates to: SFHLNRCSHSHRRSFGPKRTLTP*LCPLQV
Trigger: AACTTGTAGTGGACAAAGCCATGGAGTTAAAGTTCG...CTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGTTTAAGTGGAATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
3UTR CAA 72 bp ATGAATAACCATAGTGGGTTAGGCCAAAACTTGACCTaGATTTGGTCAAAAACACTCTTCAAAGCTGTTGGT +
Preference number: 4 (lower is better)
Translates to: MNNHSGLGQNLT*IWSKTLFKAVG
Trigger: ACCAACAGCTTTGAAGAGTGTTTTTGACCAAATCAAGGTCAAGTTTTGGCCTAACCCACTATGGTTATTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
3UTR CAA 72 bp ATCACATCTTTTTACCTCTCAAATTCCCAGGTCTTCTaGACCCTGCTAAGTATGAATAACCATAGTGGGTTA +
Preference number: 4 (lower is better)
Translates to: ITSFYLSNSQVF*TLLSMNNHSGL
Trigger: TAACCCACTATGGTTATTCATACTTAGCAGGGTCAAGAAGACCTGGGAATTTGAGAGGTAAAAAGATGTGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
3UTR CAA 72 bp CTAAGTATGAATAACCATAGTGGGTTAGGCCAAAACTaGACCTTGATTTGGTCAAAAACACTCTTCAAAGCT +
Preference number: 4 (lower is better)
Translates to: LSMNNHSGLGQN*TLIWSKTLFKA
Trigger: AGCTTTGAAGAGTGTTTTTGACCAAATCAAGGTCAAGTTTTGGCCTAACCCACTATGGTTATTCATACTTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
CDS-3UTR CAA 90 bp CACTTAAACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGTCAAGAAACTCGAGGCTCCAGTaGCTCAGCTTCTTCCAGCAC +
Preference number: 5 (lower is better)
Translates to: HLNRCSHSHRRSFGPKSRNSRLQ*LSFFQH
Trigger: GTGCTGGAAGAAGCTGAGCAACTGGAGCCTCGAGTT...TCTTGACTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGTTTAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6
CDS-3UTR CAA 90 bp ACAGATGCTCTCATAGCCACAGGAGGTCATTTGGACCAAAGTCAAGATGCATCCACCTTTCAGGAGACTTaGAGTGGCTTCTATGTCTGT +
Preference number: 5 (lower is better)
Translates to: TDALIATGGHLDQSQDASTFQET*SGFYVC
Trigger: ACAGACATAGAAGCCACTCAAAGTCTCCTGAAAGGT...GGATGCATCTTGACTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079213.6