Pregenerated sensors for PRPF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015748Ensembl transcript IDs: ENSMUST00000015892.14, ENSMUST00000159901.8, ENSMUST00000161476.8
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAACTACATAGGGTAGCACCAGGCTaGCTGGGTGAACTTGGTAGT | + |
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Preference number: 2 (lower is better) Translates to: HIAERSHMASLTVEIELHRVAPG*LGELGS Trigger: ACTACCAAGTTCACCCAGTCAGCCTGGTGCTACCCT...ATGTAGTTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| 3UTR-3UTR CCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACAGCCCTGGTATCGGCCTaGCACAGTTCTGAGATCACA | + |
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Preference number: 2 (lower is better) Translates to: PILNLLKRLFSISLRGVTALVSA*HSSEIT Trigger: TGTGATCTCAGAACTGTGCCAGGCCGATACCAGGGC...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| 3UTR-3UTR TCA 90 bp | CATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAACTACATATAGCCATACCCATTTaGAGAACTAATTTCCTAGGA | + |
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Preference number: 2 (lower is better) Translates to: HIAERSHMASLTVEIELHIAIPI*RTNFLG Trigger: TCCTAGGAAATTAGTTCTTCAAATGGGTATGGCTAT...ATGTAGTTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| 3UTR-3UTR CCA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGAAATACATACTGCATTTaGCCACTCATCCCACAACCA | + |
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Preference number: 2 (lower is better) Translates to: KLNYITDSCLSLQTDALGNTYCI*PLIPQP Trigger: TGGTTGTGGGATGAGTGGCCAAATGCAGTATGTATT...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| 3UTR-3UTR GCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACATTAAGAAATACATACTaGATTTGGCCACTCATCCCA | + |
|
Preference number: 2 (lower is better) Translates to: PILNLLKRLFSISLRGVTLRNTY*IWPLIP Trigger: TGGGATGAGTGGCCAAATGCAGTATGTATTTCTTAA...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| 3UTR-3UTR CCA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGAAGGATCCTAGGAATATaGAAAAATCACCCACAAAAC | + |
|
Preference number: 2 (lower is better) Translates to: KLNYITDSCLSLQTDALGRILGI*KNHPQN Trigger: GTTTTGTGGGTGATTTTTCCATATTCCTAGGATCCT...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| 3UTR TCA 72 bp | TCATATGCACATACAGGATGGAGGGTAGCACCAGGCTaGCTGGGTGAACTTGGTAGTCTTTTTGCCCTGGTA | + |
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Preference number: 3 (lower is better) Translates to: SYAHTGWRVAPG*LGELGSLFALV Trigger: TACCAGGGCAAAAAGACTACCAAGTTCACCCAGTCAGCCTGGTGCTACCCTCCATCCTGTATGTGCATATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015892.14 ENSMUST00000159901.8 ENSMUST00000161476.8 |
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| 3UTR-3UTR CAA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAACACGGTGGGGTAAGGTaGGGAAGTAGAGTGAGAAGA | + |
|
Preference number: 3 (lower is better) Translates to: IQHIAERSHMASLTVEIEHGGVR*GSRVRR Trigger: TCTTCTCACTCTACTTCCCAACCTTACCCCACCGTG...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| 3UTR-3UTR CAA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACAGCTGACTGGGTGAACTaGGTAGTCTTTTTGCCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: PILNLLKRLFSISLRGVTADWVN*VVFLPW Trigger: CCAGGGCAAAAAGACTACCAAGTTCACCCAGTCAGC...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CCA 90 bp | CATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAACTACATAACGCCAGCTGGGCCTaGATTCGGGCTTGCAGCTCG | + |
|
Preference number: 4 (lower is better) Translates to: HIAERSHMASLTVEIELHNASWA*IRACSS Trigger: CGAGCTGCAAGCCCGAATCCAGGCCCAGCTGGCGTT...ATGTAGTTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | CATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAACTACATTGGGCATGCGATGTGTaGGCTCCACCTCCTTGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: HIAERSHMASLTVEIELHWACDV*APPPCL Trigger: CAGGCAAGGAGGTGGAGCTCACACATCGCATGCCCA...ATGTAGTTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAAGACCACTGTGGGCTCTaGGAAGCCCAGCACTCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: IQHIAERSHMASLTVEIEDHCGL*EAQHSL Trigger: AAGAGAGTGCTGGGCTTCTCAGAGCCCACAGTGGTC...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAAAGTTCAAGGCTGCAGTaGCCACTGTGGGCTCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: IQHIAERSHMASLTVEIESSRLQ*PLWALR Trigger: TCTCAGAGCCCACAGTGGTCACTGCAGCCTTGAACT...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CCA 90 bp | CATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAACTACATGTGCGTCTTTGGCGCTaGGAAGGGGCAATTGAGACT | + |
|
Preference number: 4 (lower is better) Translates to: HIAERSHMASLTVEIELHVRLWR*EGAIET Trigger: AGTCTCAATTGCCCCTTCCCAGCGCCAAAGACGCAC...ATGTAGTTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAATGTCTCTTTGCCATCTaGGCTCTGACATGGGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: IQHIAERSHMASLTVEIECLFAI*ALTWAS Trigger: AGAAGCCCATGTCAGAGCTCAGATGGCAAAGAGACA...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR GCA 90 bp | CATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAACTACATGGAGCTTTGTTAGCATaGCAGGGCTTTCTGATGGAG | + |
|
Preference number: 4 (lower is better) Translates to: HIAERSHMASLTVEIELHGALLA*QGFLME Trigger: CTCCATCAGAAAGCCCTGGCATGCTAACAAAGCTCC...ATGTAGTTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR GCA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAAGACCTTTCTCTGTTCTaGTGTAAGTTTTCGGGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: IQHIAERSHMASLTVEIEDLSLF*CKFSGR Trigger: GCGGCCCGAAAACTTACAGCAGAACAGAGAAAGGTC...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACAATTGCCAATAAGCCCTaGCTTCAACGCCAGCTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTIANKP*LQRQLG Trigger: GCCCAGCTGGCGTTGAAGCCAGGGCTTATTGGCAAT...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACACCACTACCACCACGTTaGCATCTTTGTGCAGCACCA | + |
|
Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTPLPPR*HLCAAP Trigger: TGGTGCTGCACAAAGATGTCAACGTGGTGGTAGTGG...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR GCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACAGCGTTGGCCTCTTCATaGGCTTTCTGTCTCTTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTALASS*AFCLFA Trigger: GGCAAAGAGACAGAAAGCGCATGAAGAGGCCAACGC...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CCA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAAGGAAGTCGCTCTGGTTaGGAAGAAGAAGGTGTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: IQHIAERSHMASLTVEIEGSRSG*EEEGVF Trigger: AAAGACACCTTCTTCTTCCCAACCAGAGCGACTTCC...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CCA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAATTGAGATTCTCACTTTaGGCTCTGGAGGAGGTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: IQHIAERSHMASLTVEIELRFSL*ALEEVS Trigger: TGACACCTCCTCCAGAGCCCAAAGTGAGAATCTCAA...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR GCA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGAACGTTGACATCTTTGTaGAGCACCACCACCCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: KLNYITDSCLSLQTDALGTLTSL*STTTPV Trigger: GACAGGGGTGGTGGTGCTGCACAAAGATGTCAACGT...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACACGTCTTCTCTATCCATaGCTTCAGCTCATCCAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTRLLYP*LQLIQL Trigger: GAGCTGGATGAGCTGAAGCCATGGATAGAGAAGACG...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CCA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGAATTTCTTCTGGGCTTTaGGGCCCCCTTCCACTACCA | + |
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Preference number: 4 (lower is better) Translates to: KLNYITDSCLSLQTDALGISSGL*GPLPLP Trigger: TGGTAGTGGAAGGGGGCCCCAAAGCCCAGAAGAAAT...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACATGCAGCTTCTCCAATTaGGCCTTTGTCCGTAATCGT | + |
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Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTCSFSN*AFVRNR Trigger: ACGATTACGGACAAAGGCTCAATTGGAGAAGCTGCA...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | CATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAACTACATTTTTCTAGCAGCTTGTaGAATCTCTGCTTGCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: HIAERSHMASLTVEIELHFSSSL*NLCLQL Trigger: AAGCTGCAAGCAGAGATTTCACAAGCTGCTAGAAAA...ATGTAGTTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGAGTGTCAGGCCTAGCCTaGCTTTCTCTTGTAGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: KLNYITDSCLSLQTDALGVSGLA*LSLVAL Trigger: AAGAGCTACAAGAGAAAGTCAGGCTAGGCCTGACAC...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR GCA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAACCATGCTTTTTGAAATaGTCACGAGCCATGTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: IQHIAERSHMASLTVEIEPCFLK*SRAMFS Trigger: AGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGG...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACATGTATCATTGTCAACTaGAGGATTAAGCTGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTCIIVN*RIKLGW Trigger: CCAGCCCAGCTTAATCCTCCAGTTGACAATGATACA...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACATACCCCAAGGGTAACTaGTGTATCATTGTCAACTGG | + |
|
Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTYPKGN*CIIVNW Trigger: CCAGTTGACAATGATACACCAGTTACCCTTGGGGTA...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACATATGTGCACCCCCTGTaGAATGTCTTCTTTAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTYVHPL*NVFFKL Trigger: AAGCTTAAAGAAGACATTTCACAGGGGGTGCACATA...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR GCA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGAGGCTTTTCTTTTAGCTaGTGCTTGAACTGTTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: KLNYITDSCLSLQTDALGGFSFS*CLNCSL Trigger: GAGGGAACAGTTCAAGCAGCAGCTAAAAGAAAAGCC...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGACTTCCATCATCTGTTTaGTCTGGAGCTTTGTTAGCA | + |
|
Preference number: 4 (lower is better) Translates to: KLNYITDSCLSLQTDALGLPSSV*SGALLA Trigger: TGCTAACAAAGCTCCAGATCAAACAGATGATGGAAG...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR TCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACAAGTCTAGTCGAAGTATaGATGCCTGTTTTTCTAGCA | + |
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Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTSLVEV*MPVFLA Trigger: TGCTAGAAAAACAGGCATTCATACTTCGACTAGACT...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR GCA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACACTCCGTAGTTTCTTCTaGTCCTTCTTCGTAAGATAT | + |
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Preference number: 4 (lower is better) Translates to: PILNLLKRLFSISLRGVTLRSFF*SFFVRY Trigger: ATATCTTACGAAGAAGGAGCAGAAGAAACTACGGAG...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| 3UTR CAA 72 bp | TCTGACTTACTATCTCCAGAAAACTGTACTTACCATTaGCTTAGAAGTCAGACATTTACACACTTAAACTAC | + |
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Preference number: 4 (lower is better) Translates to: SDLLSPENCTYH*LRSQTFTHLNY Trigger: GTAGTTTAAGTGTGTAAATGTCTGACTTCTAAGCAAATGGTAAGTACAGTTTTCTGGAGATAGTAAGTCAGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAATCAGCCGCCTTCTTTTaGTCCATGCCCTTCCCCACA | + |
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Preference number: 5 (lower is better) Translates to: IQHIAERSHMASLTVEIESAAFF*SMPFPT Trigger: TGTGGGGAAGGGCATGGACAAAAAGAAGGCGGCTGA...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAATCCACTACCACCACGTaGACATCTTTGTGCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: IQHIAERSHMASLTVEIESTTTT*TSLCST Trigger: GGTGCTGCACAAAGATGTCAACGTGGTGGTAGTGGA...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACAAATTTCTTCTGGGCTTaGGGGCCCCCTTCCACTACC | + |
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Preference number: 5 (lower is better) Translates to: PILNLLKRLFSISLRGVTNFFWA*GPPSTT Trigger: GGTAGTGGAAGGGGGCCCCAAAGCCCAGAAGAAATT...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAAGCTTCCATCATCTGTTaGATCTGGAGCTTTGTTAGC | + |
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Preference number: 5 (lower is better) Translates to: IQHIAERSHMASLTVEIEASIIC*IWSFVS Trigger: GCTAACAAAGCTCCAGATCAAACAGATGATGGAAGC...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGAGGGAAGTCGCTCTGGTaGGGAAGAAGAAGGTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: KLNYITDSCLSLQTDALGGKSLW*GRRRCL Trigger: AAGACACCTTCTTCTTCCCAACCAGAGCGACTTCCC...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAATCTCCAATTGAGCCTTaGTCCGTAATCGTTGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: IQHIAERSHMASLTVEIESPIEP*SVIVEQ Trigger: TTGCTCAACGATTACGGACAAAGGCTCAATTGGAGA...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACAGTAAGGTCAAAGCCGTaGGGTATGATGTACGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: PILNLLKRLFSISLRGVTVRSKP*GMMYES Trigger: GGACTCGTACATCATACCCAACGGCTTTGACCTTAC...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGATTTGAGATTCTCACTTaGGGCTCTGGAGGAGGTGTC | + |
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Preference number: 5 (lower is better) Translates to: KLNYITDSCLSLQTDALGFEILT*GSGGGV Trigger: GACACCTCCTCCAGAGCCCAAAGTGAGAATCTCAAA...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | AAATTGAACTACATTACTGATTCCTGTCTTAGTTTACAAACTGATGCCCTTGGATTTCCGTTCCTCGATTaGTCGTGTTGCTGCTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: KLNYITDSCLSLQTDALGFPFLD*SCCCFH Trigger: ATGGAAGCAGCAACACGACAAATCGAGGAACGGAAA...TCCAAGGGCATCAGTTTGTAAACTAAGACAGGAATCAGTAATGTAGTTCAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | CCTATCTTAAATCTTCTTAAAAGGTTATTCAGCATATCGCTGAGAGGAGTCACAGTAACTGGTGTATCATaGTCAACTGGAGGATTAAGC | + |
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Preference number: 5 (lower is better) Translates to: PILNLLKRLFSISLRGVTVTGVS*STGGLS Trigger: GCTTAATCCTCCAGTTGACAATGATACACCAGTTAC...TGTGACTCCTCTCAGCGATATGCTGAATAACCTTTTAAGAAGATTTAAGATAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS-3UTR CAA 90 bp | ATTCAGCATATCGCTGAGAGGAGTCACATGGCATCATTAACAGTGGAAATTGAAATACTCGCATTAAATTaGAGATTCTCACTTTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: IQHIAERSHMASLTVEIEILALN*RFSLWA Trigger: AGCCCAAAGTGAGAATCTCAAATTTAATGCGAGTAT...TTCAATTTCCACTGTTAATGATGCCATGTGACTCCTCTCAGCGATATGCTGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015892.14 |
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| CDS CCA 72 bp | TTGGCATTGCCAATAAGCCCTGGCTTCAACGCCAGCTaGGCCTGGATTCGGGCTTGCAGCTCGGCAGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LALPISPGFNAS*AWIRACSSAAF Trigger: GAAAGCTGCCGAGCTGCAAGCCCGAATCCAGGCCCAGCTGGCGTTGAAGCCAGGGCTTATTGGCAATGCCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015892.14 ENSMUST00000161476.8 |
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| CDS GCA 72 bp | CTGCTTGAACTGTTCCCTCTTCACAGCCCGAATGTTTaGCTTCAGGGTGGGCATGCGATGTGTGAGCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: LLELFPLHSPNV*LQGGHAMCELH Trigger: GTGGAGCTCACACATCGCATGCCCACCCTGAAGGCAAACATTCGGGCTGTGAAGAGGGAACAGTTCAAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015892.14 ENSMUST00000161476.8 |
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