Pregenerated sensors for PRPF18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039449Ensembl transcript IDs: ENSMUST00000035721.14, ENSMUST00000152362.7, ENSMUST00000192470.2
Found 112 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGAAGCCAGGAACGCCACAACTCTCCGGCATCCAGTCCCGAGGCTaGCACTCTCAGCTGGATCCACGGCCACTTCCTCACCCTGTCCTT | + |
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Preference number: 1 (lower is better) Translates to: GKPGTPQLSGIQSRG*HSQLDPRPLPHPVL Trigger: AAGGACAGGGTGAGGAAGTGGCCGTGGATCCAGCTGAGAGTGGCAGCCTCGGGACTGGATGCCGGAGAGTTGTGGCGTTCCTGGCTTCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CCA 90 bp | CGCCACAACTCTCCGGCATCCAGTCCCGAGGCTGCCACTCTCAGCTaGATCCACGGCCACTTCCTCACCCTGTCCTTGATATGCTGGTGT | + |
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Preference number: 1 (lower is better) Translates to: RHNSPASSPEAATLS*IHGHFLTLSLICWC Trigger: ACACCAGCATATCAAGGACAGGGTGAGGAAGTGGCCGTGGATCCAGCTGAGAGTGGCAGCCTCGGGACTGGATGCCGGAGAGTTGTGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR TCA 90 bp | GTAAGCCCTAGAGCAAGTCATGTTGTGAGGCGAGTGAGGACCAAGTaGGGCACAGGGAAGCCAGGAACGCCACAACTCTCCGGCATCCAG | + |
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Preference number: 1 (lower is better) Translates to: VSPRASHVVRRVRTK*GTGKPGTPQLSGIQ Trigger: CTGGATGCCGGAGAGTTGTGGCGTTCCTGGCTTCCCTGTGCCTCACTTGGTCCTCACTCGCCTCACAACATGACTTGCTCTAGGGCTTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CCA 90 bp | CACCCTGCAAACAACTGGCAGAAGCTATCCTATCTATGCATGCCTTaGACCTTAAGGAGCCCAAAGTGGCTTTCTCAGGAGGGGCCAGCA | + |
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Preference number: 1 (lower is better) Translates to: HPANNWQKLSYLCMP*TLRSPKWLSQEGPA Trigger: TGCTGGCCCCTCCTGAGAAAGCCACTTTGGGCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTTTGCAGGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR GCA 90 bp | CAGTTCCATGTGAAAGCCAACACAGTTCTTAAAGTCAACAAGAACTaGACCAGGAAGACCCCACGGTGGAGCTCTTCCCTCGTAGCTGTG | + |
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Preference number: 1 (lower is better) Translates to: QFHVKANTVLKVNKN*TRKTPRWSSSLVAV Trigger: CACAGCTACGAGGGAAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTGTGTTGGCTTTCACATGGAACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| 3UTR CCA 90 bp | GGGAACACTGATTCAACCCAAGACAGCCACCACCCTGCAAACAACTaGCAGAAGCTATCCTATCTATGCATGCCTTGGACCTTAAGGAGC | + |
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Preference number: 1 (lower is better) Translates to: GNTDSTQDSHHPANN*QKLSYLCMPWTLRS Trigger: GCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTTTGCAGGGTGGTGGCTGTCTTGGGTTGAATCAGTGTTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR TCA 90 bp | ATTCCATTACAGATGGTTATGAGCCACCATGTGATTGCTGGGTATTaGACTCAGGACCTCAGGAAGAAGAGTCAGTGCTCTTACCCGCTG | + |
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Preference number: 1 (lower is better) Translates to: IPLQMVMSHHVIAGY*TQDLRKKSQCSYPL Trigger: CAGCGGGTAAGAGCACTGACTCTTCTTCCTGAGGTCCTGAGTTCAATACCCAGCAATCACATGGTGGCTCATAACCATCTGTAATGGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR GCA 90 bp | AGGGCATCAGATTCCATTACAGATGGTTATGAGCCACCATGTGATTaGTGGGTATTGAACTCAGGACCTCAGGAAGAAGAGTCAGTGCTC | + |
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Preference number: 1 (lower is better) Translates to: RASDSITDGYEPPCD*WVLNSGPQEEESVL Trigger: GAGCACTGACTCTTCTTCCTGAGGTCCTGAGTTCAATACCCAGCAATCACATGGTGGCTCATAACCATCTGTAATGGAATCTGATGCCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CCA 90 bp | ACTCTTAGCATCAATGTCAGACAAAGAAGCCAAAGCTCAGCGAGATaGACCCACATGCCCAAAGCTGTAGTTAGATCGAGCATGTCCTTG | + |
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Preference number: 1 (lower is better) Translates to: TLSINVRQRSQSSAR*THMPKAVVRSSMSL Trigger: CAAGGACATGCTCGATCTAACTACAGCTTTGGGCATGTGGGTCCATCTCGCTGAGCTTTGGCTTCTTTGTCTGACATTGATGCTAAGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR TCA 90 bp | AGCCACCTTCAAATGTTCCTAAGTATCAACGACACACTGGGATCTTaGCAATGGTCATTTCCAACCCCCTTTCCTGAGTGGTGGTTGTCT | + |
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Preference number: 1 (lower is better) Translates to: SHLQMFLSINDTLGS*QWSFPTPFPEWWLS Trigger: AGACAACCACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGTTGATACTTAGGAACATTTGAAGGTGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| 3UTR TCA 90 bp | ATTGAACTCAGGACCTCAGGAAGAAGAGTCAGTGCTCTTACCCGCTaGGCCATTTCTCCAGCCCCTTTATGTGGAATATTAACAAGAGAA | + |
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Preference number: 1 (lower is better) Translates to: IELRTSGRRVSALTR*AISPAPLCGILTRE Trigger: TTCTCTTGTTAATATTCCACATAAAGGGGCTGGAGAAATGGCTCAGCGGGTAAGAGCACTGACTCTTCTTCCTGAGGTCCTGAGTTCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CCA 90 bp | GCATCAGATTCCATTACAGATGGTTATGAGCCACCATGTGATTGCTaGGTATTGAACTCAGGACCTCAGGAAGAAGAGTCAGTGCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: ASDSITDGYEPPCDC*VLNSGPQEEESVLL Trigger: TAAGAGCACTGACTCTTCTTCCTGAGGTCCTGAGTTCAATACCCAGCAATCACATGGTGGCTCATAACCATCTGTAATGGAATCTGATGC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR TCA 90 bp | TATGACCAAACCACATGTCACAGTAGGGATTTGCTGCACATCTTATaGGAGTTTCTTCTTTGTCAAGTAAGTCCCAAGGTACACCTGCTT | + |
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Preference number: 1 (lower is better) Translates to: YDQTTCHSRDLLHIL*EFLLCQVSPKVHLL Trigger: AAGCAGGTGTACCTTGGGACTTACTTGACAAAGAAGAAACTCTCATAAGATGTGCAGCAAATCCCTACTGTGACATGTGGTTTGGTCATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR TCA 90 bp | AGACAACATAAAATGACTTACCATGCTGTGTGGCCTAACAGTGGATaGAGAATGAGTGATTTGGGCATTTCTGATAGTATTTATAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: RQHKMTYHAVWPNSG*RMSDLGISDSIYKE Trigger: TTCTTTATAAATACTATCAGAAATGCCCAAATCACTCATTCTTCATCCACTGTTAGGCCACACAGCATGGTAAGTCATTTTATGTTGTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR TCA 90 bp | ACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACAGTCCCAGTCCTGGAGAATCGAGTGAGGACCAAGTaGGGCACAGGGAAGCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: TCFSPPSFRMATVPVLENRVRTK*GTGKPG Trigger: TCCTGGCTTCCCTGTGCCTCACTTGGTCCTCACTCG...ATTCTCCAGGACTGGGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CAA 90 bp | CCACCCTGCAAACAACTGGCAGAAGCTATCCTATCTATGCATGCCTaGGACCTTAAGGAGCCCAAAGTGGCTTTCTCAGGAGGGGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: PPCKQLAEAILSMHA*DLKEPKVAFSGGAS Trigger: GCTGGCCCCTCCTGAGAAAGCCACTTTGGGCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTTTGCAGGGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR TCA 90 bp | ACTGAGAGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCAAGTGCTCTTACCCGCTaGGCCATTTCTCCAGCCCCT | + |
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Preference number: 2 (lower is better) Translates to: TESHIREHASLHPASEWPSALTR*AISPAP Trigger: AGGGGCTGGAGAAATGGCTCAGCGGGTAAGAGCACT...TGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CAA 90 bp | AGATGGACCCACATGCCCAAAGCTGTAGTTAGATCGAGCATGTCCTaGAGAAGCTGTCAGTCCTGGTTTGGCCCACTCCCTCTTCCTTCT | + |
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Preference number: 2 (lower is better) Translates to: RWTHMPKAVVRSSMS*RSCQSWFGPLPLPS Trigger: AGAAGGAAGAGGGAGTGGGCCAAACCAGGACTGACAGCTTCTCAAGGACATGCTCGATCTAACTACAGCTTTGGGCATGTGGGTCCATCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR CCA 90 bp | AGACAAAGAAGCCAAAGCTCAGCGAGATGGACCCACATGCCCAAAGCTGTAGTTCTGTCAGTCCTGGTTTaGCCCACTCCCTCTTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: RQRSQSSARWTHMPKAVVLSVLV*PTPSSF Trigger: GAAGGAAGAGGGAGTGGGCCAAACCAGGACTGACAG...AACTACAGCTTTGGGCATGTGGGTCCATCTCGCTGAGCTTTGGCTTCTTTGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR TCA 90 bp | AGACAAAGAAGCCAAAGCTCAGCGAGATGGACCCACATGCCCAAAGCTGTAGTTTCCAACCCCCTTTCCTaGGTGGTGGTTGTCTACACA | + |
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Preference number: 2 (lower is better) Translates to: RQRSQSSARWTHMPKAVVSNPLS*VVVVYT Trigger: TGTGTAGACAACCACCACTCAGGAAAGGGGGTTGGA...AACTACAGCTTTGGGCATGTGGGTCCATCTCGCTGAGCTTTGGCTTCTTTGTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR GCA 90 bp | ACTGAGAGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCAAAAGTCAACAAGAACTaGACCAGGAAGACCCCACGG | + |
|
Preference number: 2 (lower is better) Translates to: TESHIREHASLHPASEWPKVNKN*TRKTPR Trigger: CCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTT...TGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR GCA 90 bp | CAAGTGAGGCACAGGGAAGCCAGGAACGCCACAACTCTCCGGCATCCAGTCCCGACACAAAAATTAGTTTaGAGTCCAGTTCCATGTGAA | + |
|
Preference number: 2 (lower is better) Translates to: QVRHREARNATTLRHPVPTQKLV*SPVPCE Trigger: TTCACATGGAACTGGACTGCAAACTAATTTTTGTGT...CGGGACTGGATGCCGGAGAGTTGTGGCGTTCCTGGCTTCCCTGTGCCTCACTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR CCA 90 bp | ACTGAGAGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCAACCCCCTTTCCTGAGTaGTGGTTGTCTACACACTTA | + |
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Preference number: 2 (lower is better) Translates to: TESHIREHASLHPASEWPTPFPE*WLSTHL Trigger: TAAGTGTGTAGACAACCACCACTCAGGAAAGGGGGT...TGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR CCA 90 bp | ACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACAGTCCCAGTCCTGGAGAATCACCCTGCAAACAACTaGCAGAAGCTATCCTATCTA | + |
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Preference number: 2 (lower is better) Translates to: TCFSPPSFRMATVPVLENHPANN*QKLSYL Trigger: TAGATAGGATAGCTTCTGCCAGTTGTTTGCAGGGTG...ATTCTCCAGGACTGGGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CAA 90 bp | GATTCCATTACAGATGGTTATGAGCCACCATGTGATTGCTGGGTATaGAACTCAGGACCTCAGGAAGAAGAGTCAGTGCTCTTACCCGCT | + |
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Preference number: 2 (lower is better) Translates to: DSITDGYEPPCDCWV*NSGPQEEESVLLPA Trigger: AGCGGGTAAGAGCACTGACTCTTCTTCCTGAGGTCCTGAGTTCAATACCCAGCAATCACATGGTGGCTCATAACCATCTGTAATGGAATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR TCA 90 bp | ACGACACACTGGGATCTTGACAATGGTCATTTCCAACCCCCTTTCCTGAGTGGTCAGTCCAGTTCCATGTaGAAGCCAACACAGTTCTTA | + |
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Preference number: 2 (lower is better) Translates to: TTHWDLDNGHFQPPFLSGQSSSM*KPTQFL Trigger: TAAGAACTGTGTTGGCTTTCACATGGAACTGGACTG...ACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| 3UTR-3UTR TCA 90 bp | CCACATGTCACAGTAGGGATTTGCTGCACATCTTATGAGAGTTTCTTCTTTGTCTCCCTCTTCCTTCTCTaGCACCACACCCAACCCATC | + |
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Preference number: 2 (lower is better) Translates to: PHVTVGICCTSYESFFFVSLFLL*HHTQPI Trigger: GATGGGTTGGGTGTGGTGTCAGAGAAGGAAGAGGGA...GACAAAGAAGAAACTCTCATAAGATGTGCAGCAAATCCCTACTGTGACATGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR GCA 90 bp | TGGTCATTTCCAACCCCCTTTCCTGAGTGGTGGTTGTCTACACACTTAAACTACAAAGTCAACAAGAACTaGACCAGGAAGACCCCACGG | + |
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Preference number: 2 (lower is better) Translates to: WSFPTPFPEWWLSTHLNYKVNKN*TRKTPR Trigger: CCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTT...GTAGTTTAAGTGTGTAGACAACCACCACTCAGGAAAGGGGGTTGGAAATGACCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| 3UTR-3UTR TCA 90 bp | GTACATTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTCCATTACAACAGAGTGGTCACGGTaGCCAAAGCTCCATTCTGTA | + |
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Preference number: 2 (lower is better) Translates to: VHCSCLQTHQKRASDSITTEWSR*PKLHSV Trigger: TACAGAATGGAGCTTTGGTCACCGTGACCACTCTGT...TGTAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAATGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR GCA 90 bp | AGAGTTTCTTCTTTGTCAAGTAAGTCCCAAGGTACACCTGCTTTCATCTTAGGACAGACCTCTCAGCATTaGAGCACAGAGTGGTCACGG | + |
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Preference number: 2 (lower is better) Translates to: RVSSLSSKSQGTPAFILGQTSQH*STEWSR Trigger: CCGTGACCACTCTGTGCTGCAATGCTGAGAGGTCTG...TCCTAAGATGAAAGCAGGTGTACCTTGGGACTTACTTGACAAAGAAGAAACTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR CCA 90 bp | AGAGTTTCTTCTTTGTCAAGTAAGTCCCAAGGTACACCTGCTTTCATCTTAGGACTGTCCTTGATATGCTaGTGTTCTGAACTTAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: RVSSLSSKSQGTPAFILGLSLIC*CSELRL Trigger: CAGCCTAAGTTCAGAACACCAGCATATCAAGGACAG...TCCTAAGATGAAAGCAGGTGTACCTTGGGACTTACTTGACAAAGAAGAAACTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR TCA 90 bp | AAAGGTCATCTTCCTACATATCCCAGGAGTTTCTATGTAGCTTCTTTAATTTGTCAGTCCAGTTCCATGTaGAAGCCAACACAGTTCTTA | + |
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Preference number: 2 (lower is better) Translates to: KGHLPTYPRSFYVASLICQSSSM*KPTQFL Trigger: TAAGAACTGTGTTGGCTTTCACATGGAACTGGACTG...ACAAATTAAAGAAGCTACATAGAAACTCCTGGGATATGTAGGAAGATGACCTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR CCA 90 bp | AAAGGTCATCTTCCTACATATCCCAGGAGTTTCTATGTAGCTTCTTTAATTTGTGTTCTGAACTTAGGCTaGTATAACAGCCATCTTTCG | + |
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Preference number: 2 (lower is better) Translates to: KGHLPTYPRSFYVASLICVLNLG*YNSHLS Trigger: CGAAAGATGGCTGTTATACCAGCCTAAGTTCAGAAC...ACAAATTAAAGAAGCTACATAGAAACTCCTGGGATATGTAGGAAGATGACCTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR GCA 72 bp | GGAACGCCACAACTCTCCGGCATCCAGTCCCGAGGCTaGCACTCTCAGCTGGATCCACGGCCACTTCCTCAC | + |
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Preference number: 3 (lower is better) Translates to: GTPQLSGIQSRG*HSQLDPRPLPH Trigger: GTGAGGAAGTGGCCGTGGATCCAGCTGAGAGTGGCAGCCTCGGGACTGGATGCCGGAGAGTTGTGGCGTTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CCA 72 bp | TCTCCGGCATCCAGTCCCGAGGCTGCCACTCTCAGCTaGATCCACGGCCACTTCCTCACCCTGTCCTTGATA | + |
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Preference number: 3 (lower is better) Translates to: SPASSPEAATLS*IHGHFLTLSLI Trigger: TATCAAGGACAGGGTGAGGAAGTGGCCGTGGATCCAGCTGAGAGTGGCAGCCTCGGGACTGGATGCCGGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR CAA 90 bp | CAAGTGAGGCACAGGGAAGCCAGGAACGCCACAACTCTCCGGCATCCAGTCCCGTTTCCTGAGTGGTGGTaGTCTACACACTTAAACTAC | + |
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Preference number: 3 (lower is better) Translates to: QVRHREARNATTLRHPVPFPEWW*STHLNY Trigger: GTAGTTTAAGTGTGTAGACAACCACCACTCAGGAAA...CGGGACTGGATGCCGGAGAGTTGTGGCGTTCCTGGCTTCCCTGTGCCTCACTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CCA 72 bp | CTCCACCCAGCTTCAGAATGGCCACAGTCCCAGTCCTaGAGAATACGAATTCCCCTGCAGACAAAGCAAGCT | + |
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Preference number: 3 (lower is better) Translates to: LHPASEWPQSQS*RIRIPLQTKQA Trigger: AGCTTGCTTTGTCTGCAGGGGAATTCGTATTCTCCAGGACTGGGACTGTGGCCATTCTGAAGCTGGGTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR TCA 72 bp | CAGACCTCTCAGCATTGCAGCACAGAGTGGTCACGGTaGCCAAAGCTCCATTCTGTAAGCCCTAGAGCAAGT | + |
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Preference number: 3 (lower is better) Translates to: QTSQHCSTEWSR*PKLHSVSPRAS Trigger: ACTTGCTCTAGGGCTTACAGAATGGAGCTTTGGTCACCGTGACCACTCTGTGCTGCAATGCTGAGAGGTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CCA 72 bp | GTTAGATCGAGCATGTCCTTGAGAAGCTGTCAGTCCTaGTTTGGCCCACTCCCTCTTCCTTCTCTGACACCA | + |
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Preference number: 3 (lower is better) Translates to: VRSSMSLRSCQS*FGPLPLPSLTP Trigger: TGGTGTCAGAGAAGGAAGAGGGAGTGGGCCAAACCAGGACTGACAGCTTCTCAAGGACATGCTCGATCTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR CAA 90 bp | AGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACAGTCCTGTGATTGCTGGGTATaGAACTCAGGACCTCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: SHIREHASLHPASEWPQSCDCWV*NSGPQE Trigger: TTCCTGAGGTCCTGAGTTCAATACCCAGCAATCACA...GGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CCA 72 bp | ATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATaGCCACAGTCCCAGTCCTGGAGAATACGAATTCCC | + |
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Preference number: 3 (lower is better) Translates to: IREHASLHPASE*PQSQSWRIRIP Trigger: GGGAATTCGTATTCTCCAGGACTGGGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR-3UTR CAA 90 bp | ACTGAGAGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCATTCCTCACCCTGTCCTaGATATGCTGGTGTTCTGAA | + |
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Preference number: 3 (lower is better) Translates to: TESHIREHASLHPASEWPFLTLS*ICWCSE Trigger: TTCAGAACACCAGCATATCAAGGACAGGGTGAGGAA...TGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR TCA 72 bp | TTAGGAAAAGGCTTCAGCTGGAGTGCAAGGGAACACTaGTTCAACCCAAGACAGCCACCACCCTGCAAACAA | + |
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Preference number: 3 (lower is better) Translates to: LGKGFSWSAREH*FNPRQPPPCKQ Trigger: TTGTTTGCAGGGTGGTGGCTGTCTTGGGTTGAATCAGTGTTCCCTTGCACTCCAGCTGAAGCCTTTTCCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR GCA 72 bp | CACCCTGCAAACAACTGGCAGAAGCTATCCTATCTATaGATGCCTTGGACCTTAAGGAGCCCAAAGTGGCTT | + |
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Preference number: 3 (lower is better) Translates to: HPANNWQKLSYL*MPWTLRSPKWL Trigger: AAGCCACTTTGGGCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTTTGCAGGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR GCA 72 bp | ACCTGCTTTCATCTTAGGAAAAGGCTTCAGCTGGAGTaGAAGGGAACACTGATTCAACCCAAGACAGCCACC | + |
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Preference number: 3 (lower is better) Translates to: TCFHLRKRLQLE*KGTLIQPKTAT Trigger: GGTGGCTGTCTTGGGTTGAATCAGTGTTCCCTTGCACTCCAGCTGAAGCCTTTTCCTAAGATGAAAGCAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR TCA 72 bp | AGGACCTCAGGAAGAAGAGTCAGTGCTCTTACCCGCTaGGCCATTTCTCCAGCCCCTTTATGTGGAATATTA | + |
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Preference number: 3 (lower is better) Translates to: RTSGRRVSALTR*AISPAPLCGIL Trigger: TAATATTCCACATAAAGGGGCTGGAGAAATGGCTCAGCGGGTAAGAGCACTGACTCTTCTTCCTGAGGTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR TCA 72 bp | CAGATGGTTATGAGCCACCATGTGATTGCTGGGTATTaGACTCAGGACCTCAGGAAGAAGAGTCAGTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: QMVMSHHVIAGY*TQDLRKKSQCS Trigger: AGAGCACTGACTCTTCTTCCTGAGGTCCTGAGTTCAATACCCAGCAATCACATGGTGGCTCATAACCATCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| 3UTR CCA 72 bp | ATCAATGTCAGACAAAGAAGCCAAAGCTCAGCGAGATaGACCCACATGCCCAAAGCTGTAGTTAGATCGAGC | + |
|
Preference number: 3 (lower is better) Translates to: INVRQRSQSSAR*THMPKAVVRSS Trigger: GCTCGATCTAACTACAGCTTTGGGCATGTGGGTCCATCTCGCTGAGCTTTGGCTTCTTTGTCTGACATTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| 3UTR CCA 72 bp | AACAACTGGCAGAAGCTATCCTATCTATGCATGCCTTaGACCTTAAGGAGCCCAAAGTGGCTTTCTCAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: NNWQKLSYLCMP*TLRSPKWLSQE Trigger: CTCCTGAGAAAGCCACTTTGGGCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| 3UTR-3UTR CAA 90 bp | ACTGAGAGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACTCCTTCACTTACTATaGCTGCTAACTCAGTTGTTG | + |
|
Preference number: 3 (lower is better) Translates to: TESHIREHASLHPASEWPLLHLL*LLTQLL Trigger: CAACAACTGAGTTAGCAGCAATAGTAAGTGAAGGAG...TGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| 3UTR-3UTR CAA 90 bp | ACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACAGTCCCAGTCCTGGAGAATTTGCTGCTAACTCAGTaGTTGTTGTTGTTGTTACAT | + |
|
Preference number: 3 (lower is better) Translates to: TCFSPPSFRMATVPVLENLLLTQ*LLLLLH Trigger: ATGTAACAACAACAACAACAACTGAGTTAGCAGCAA...ATTCTCCAGGACTGGGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| 3UTR TCA 72 bp | GGGATCTTGACAATGGTCATTTCCAACCCCCTTTCCTaGGTGGTGGTTGTCTACACACTTAAACTACGGATA | + |
|
Preference number: 3 (lower is better) Translates to: GILTMVISNPLS*VVVVYTLKLRI Trigger: TATCCGTAGTTTAAGTGTGTAGACAACCACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| 3UTR TCA 72 bp | CAAATGTTCCTAAGTATCAACGACACACTGGGATCTTaGCAATGGTCATTTCCAACCCCCTTTCCTGAGTGG | + |
|
Preference number: 3 (lower is better) Translates to: QMFLSINDTLGS*QWSFPTPFPEW Trigger: CCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGTTGATACTTAGGAACATTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| 3UTR-3UTR CAA 90 bp | GTACATTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTCCATTACACTGCTAACTCAGTTGTaGTTGTTGTTGTTACATGAG | + |
|
Preference number: 3 (lower is better) Translates to: VHCSCLQTHQKRASDSITLLTQL*LLLLHE Trigger: CTCATGTAACAACAACAACAACAACTGAGTTAGCAG...TGTAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAATGTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| 3UTR TCA 72 bp | ACCACATGTCACAGTAGGGATTTGCTGCACATCTTATaGGAGTTTCTTCTTTGTCAAGTAAGTCCCAAGGTA | + |
|
Preference number: 3 (lower is better) Translates to: TTCHSRDLLHIL*EFLLCQVSPKV Trigger: TACCTTGGGACTTACTTGACAAAGAAGAAACTCTCATAAGATGTGCAGCAAATCCCTACTGTGACATGTGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| 3UTR TCA 72 bp | CAAGACACAAAAATTAGTTTGCAGTCCAGTTCCATGTaGAAGCCAACACAGTTCTTAAAGTCAACAAGAACT | + |
|
Preference number: 3 (lower is better) Translates to: QDTKISLQSSSM*KPTQFLKSTRT Trigger: AGTTCTTGTTGACTTTAAGAACTGTGTTGGCTTTCACATGGAACTGGACTGCAAACTAATTTTTGTGTCTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR TCA 90 bp | GCTGCCACTCTCAGCTGGATCCACGGCCACTTCCTCACCCTGTCCTTGATATGCTCCTCTCCAGGTTCCTaGCCACCCACAATCTCATTC | + |
|
Preference number: 4 (lower is better) Translates to: AATLSWIHGHFLTLSLICSSPGS*PPTISF Trigger: GAATGAGATTGTGGGTGGTCAGGAACCTGGAGAGGA...GCATATCAAGGACAGGGTGAGGAAGTGGCCGTGGATCCAGCTGAGAGTGGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR GCA 90 bp | ACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACAGTCCCAGTCCTGGAGAATCTGTCCTCCACCAGCTaGCGCTTCCGCAGAATCTCG | + |
|
Preference number: 4 (lower is better) Translates to: TCFSPPSFRMATVPVLENLSSTS*RFRRIS Trigger: CGAGATTCTGCGGAAGCGGCAGCTGGTGGAGGACAG...ATTCTCCAGGACTGGGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR GCA 90 bp | CAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCTTCTGTCCTCCACCAGCTaGCGCTTCCGCAGAATCTCG | + |
|
Preference number: 4 (lower is better) Translates to: QFLKSTRTAPGRPHGGALLSSTS*RFRRIS Trigger: CGAGATTCTGCGGAAGCGGCAGCTGGTGGAGGACAG...AAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | CAAGTGAGGCACAGGGAAGCCAGGAACGCCACAACTCTCCGGCATCCAGTCCCGCCTCTAATTCTTCAATaGTGGTGTTTTCCTCGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: QVRHREARNATTLRHPVPPLILQ*WCFPRE Trigger: TTCACGAGGAAAACACCACCATTGAAGAATTAGAGG...CGGGACTGGATGCCGGAGAGTTGTGGCGTTCCTGGCTTCCCTGTGCCTCACTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| 3UTR CAA 72 bp | CACATGCCCAAAGCTGTAGTTAGATCGAGCATGTCCTaGAGAAGCTGTCAGTCCTGGTTTGGCCCACTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: HMPKAVVRSSMS*RSCQSWFGPLP Trigger: AGGGAGTGGGCCAAACCAGGACTGACAGCTTCTCAAGGACATGCTCGATCTAACTACAGCTTTGGGCATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR GCA 90 bp | ACTGAGAGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCAGTTTGCCCTGCACACTaGGTTTCACGTAGTCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: TESHIREHASLHPASEWPVCPAH*VSRSPL Trigger: GAGAGGACTACGTGAAACGCAGTGTGCAGGGCAAAC...TGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR TCA 90 bp | ACACAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTTCCTCTCCAGGTTCCTaGCCACCCACAATCTCATTC | + |
|
Preference number: 4 (lower is better) Translates to: TQFLKSTRTAPGRPHGGASSPGS*PPTISF Trigger: GAATGAGATTGTGGGTGGTCAGGAACCTGGAGAGGA...AGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | ACTGAGAGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCAACTTTCAGGTCATTCTaGGTGTCCTCCTCTCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: TESHIREHASLHPASEWPTFRSF*VSSSPG Trigger: ACCTGGAGAGGAGGACACCCAGAATGACCTGAAAGT...TGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR CCA 90 bp | ACACAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTTCTCCCTGCCAGTTCTaGCATGGATACCAACCATGG | + |
|
Preference number: 4 (lower is better) Translates to: TQFLKSTRTAPGRPHGGASPCQF*HGYQPW Trigger: CCATGGTTGGTATCCATGCCAGAACTGGCAGGGAGA...AGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR TCA 90 bp | AGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACAGTCCAACCTCTTCAGTCCCTaGATGTATTTCCGTTGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: SHIREHASLHPASEWPQSNLFSP*MYFRWV Trigger: AACCCAACGGAAATACATTCAGGGACTGAAGAGGTT...GGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR CCA 90 bp | ACGACACACTGGGATCTTGACAATGGTCATTTCCAACCCCCTTTCCTGAGTGGTAGGGGGCATTGCCAATaGCCATCTGAAGGTAAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: TTHWDLDNGHFQPPFLSGRGHCQ*PSEGKH Trigger: ATGCTTACCTTCAGATGGCCATTGGCAATGCCCCCT...ACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | CAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCTTCTGCCAGTTCTGGCATaGATACCAACCATGGTGACA | + |
|
Preference number: 4 (lower is better) Translates to: QFLKSTRTAPGRPHGGALLPVLA*IPTMVT Trigger: TGTCACCATGGTTGGTATCCATGCCAGAACTGGCAG...AAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | ACGACACACTGGGATCTTGACAATGGTCATTTCCAACCCCCTTTCCTGAGTGGTCTGCCAGTTCTGGCATaGATACCAACCATGGTGACA | + |
|
Preference number: 4 (lower is better) Translates to: TTHWDLDNGHFQPPFLSGLPVLA*IPTMVT Trigger: TGTCACCATGGTTGGTATCCATGCCAGAACTGGCAG...ACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | AACAACTGGCAGAAGCTATCCTATCTATGCATGCCTTGGACCTTAAGGAGCCCATCTCCCTGCCAGTTCTaGCATGGATACCAACCATGG | + |
|
Preference number: 4 (lower is better) Translates to: NNWQKLSYLCMPWTLRSPSPCQF*HGYQPW Trigger: CCATGGTTGGTATCCATGCCAGAACTGGCAGGGAGA...TGGGCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR CCA 90 bp | ACTGAGAGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACATGCGCAACATGCTTaGAAAAGATCTTCTCCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: TESHIREHASLHPASEWPHAQHA*KRSSPC Trigger: GCAGGGAGAAGATCTTTTCCAAGCATGTTGCGCATG...TGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCTCTCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR TCA 90 bp | ACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACAGTCCCAGTCCTGGAGAATATACTCCACACATTTTaGCGGATCTGTAGGAAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: TCFSPPSFRMATVPVLENILHTF*RICRKV Trigger: CACTTTCCTACAGATCCGTCAAAATGTGTGGAGTAT...ATTCTCCAGGACTGGGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR GCA 90 bp | TGGTCATTTCCAACCCCCTTTCCTGAGTGGTGGTTGTCTACACACTTAAACTACGTTTGCCCTGCACACTaGGTTTCACGTAGTCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: WSFPTPFPEWWLSTHLNYVCPAH*VSRSPL Trigger: GAGAGGACTACGTGAAACGCAGTGTGCAGGGCAAAC...GTAGTTTAAGTGTGTAGACAACCACCACTCAGGAAAGGGGGTTGGAAATGACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | CAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCTTCATGCGCAACATGCTTaGAAAAGATCTTCTCCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: QFLKSTRTAPGRPHGGALHAQHA*KRSSPC Trigger: GCAGGGAGAAGATCTTTTCCAAGCATGTTGCGCATG...AAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| 3UTR CAA 72 bp | ACAGATGGTTATGAGCCACCATGTGATTGCTGGGTATaGAACTCAGGACCTCAGGAAGAAGAGTCAGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: TDGYEPPCDCWV*NSGPQEEESVL Trigger: GAGCACTGACTCTTCTTCCTGAGGTCCTGAGTTCAATACCCAGCAATCACATGGTGGCTCATAACCATCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR TCA 90 bp | CAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCTTATGTCCATGTCCTTATaGTCGTCACCTTTCCCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: QFLKSTRTAPGRPHGGALMSMSL*SSPFPK Trigger: CTTAGGGAAAGGTGACGATCATAAGGACATGGACAT...AAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR GCA 90 bp | ACGACACACTGGGATCTTGACAATGGTCATTTCCAACCCCCTTTCCTGAGTGGTAAAAGATCTTCTCCCTaGCAGTTCTGGCATGGATAC | + |
|
Preference number: 4 (lower is better) Translates to: TTHWDLDNGHFQPPFLSGKRSSP*QFWHGY Trigger: GTATCCATGCCAGAACTGGCAGGGAGAAGATCTTTT...ACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR GCA 90 bp | CAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCTTAAAAGATCTTCTCCCTaGCAGTTCTGGCATGGATAC | + |
|
Preference number: 4 (lower is better) Translates to: QFLKSTRTAPGRPHGGALKRSSP*QFWHGY Trigger: GTATCCATGCCAGAACTGGCAGGGAGAAGATCTTTT...AAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR GCA 90 bp | AGCCACATTCGTGAACATGCTTCTCTCCACCCAGCTTCAGAATGGCCACAGTCCAAAACATGCGCAACATaGTTGGAAAAGATCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SHIREHASLHPASEWPQSKTCAT*LEKIFS Trigger: GGAGAAGATCTTTTCCAAGCATGTTGCGCATGTTTT...GGACTGTGGCCATTCTGAAGCTGGGTGGAGAGAAGCATGTTCACGAATGTGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR CCA 90 bp | TGGTCATTTCCAACCCCCTTTCCTGAGTGGTGGTTGTCTACACACTTAAACTACGACTCCGTCTGCTTCTaGGTAGCACTGTTCAGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: WSFPTPFPEWWLSTHLNYDSVCF*VALFSL Trigger: CAAACTGAACAGTGCTACCCAGAAGCAGACGGAGTC...GTAGTTTAAGTGTGTAGACAACCACCACTCAGGAAAGGGGGTTGGAAATGACCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR GCA 90 bp | ACACAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCTTCTGATGACCTCTTaGCTAGAAAGAGTCATAGGA | + |
|
Preference number: 4 (lower is better) Translates to: TQFLKSTRTAPGRPHGGALLMTS*LERVIG Trigger: TCCTATGACTCTTTCTAGGCAAGAGGTCATCAGAAG...AGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | CAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCTTGATGTTAGTGGTTTCTaGTCATCCTCTTTTGGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: QFLKSTRTAPGRPHGGALDVSGF*SSSFGC Trigger: ACAGCCAAAAGAGGATGACCAGAAACCACTAACATC...AAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| 3UTR CAA 72 bp | AAACAACTGGCAGAAGCTATCCTATCTATGCATGCCTaGGACCTTAAGGAGCCCAAAGTGGCTTTCTCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: KQLAEAILSMHA*DLKEPKVAFSG Trigger: TCCTGAGAAAGCCACTTTGGGCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR GCA 90 bp | ACACAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTAAAACATGCGCAACATaGTTGGAAAAGATCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: TQFLKSTRTAPGRPHGGAKTCAT*LEKIFS Trigger: GGAGAAGATCTTTTCCAAGCATGTTGCGCATGTTTT...AGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | ACACAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCCTCTAATTCTTCAATaGTGGTGTTTTCCTCGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: TQFLKSTRTAPGRPHGGAPLILQ*WCFPRE Trigger: TTCACGAGGAAAACACCACCATTGAAGAATTAGAGG...AGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR TCA 90 bp | GTACATTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTCCATTACAATGTCCATGTCCTTATaGTCGTCACCTTTCCCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: VHCSCLQTHQKRASDSITMSMSL*SSPFPK Trigger: CTTAGGGAAAGGTGACGATCATAAGGACATGGACAT...TGTAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAATGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR TCA 90 bp | TGGTCATTTCCAACCCCCTTTCCTGAGTGGTGGTTGTCTACACACTTAAACTACATACTCCACACATTTTaGCGGATCTGTAGGAAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: WSFPTPFPEWWLSTHLNYILHTF*RICRKV Trigger: CACTTTCCTACAGATCCGTCAAAATGTGTGGAGTAT...GTAGTTTAAGTGTGTAGACAACCACCACTCAGGAAAGGGGGTTGGAAATGACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | AGACAAAGAAGCCAAAGCTCAGCGAGATGGACCCACATGCCCAAAGCTGTAGTTGCCCTTGTTAACTTCTaGTGTAAGAATCTCTATCTT | + |
|
Preference number: 4 (lower is better) Translates to: RQRSQSSARWTHMPKAVVALVNF*CKNLYL Trigger: AAGATAGAGATTCTTACACCAGAAGTTAACAAGGGC...AACTACAGCTTTGGGCATGTGGGTCCATCTCGCTGAGCTTTGGCTTCTTTGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR CCA 90 bp | ACACAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTGCCCTTGTTAACTTCTaGTGTAAGAATCTCTATCTT | + |
|
Preference number: 4 (lower is better) Translates to: TQFLKSTRTAPGRPHGGAALVNF*CKNLYL Trigger: AAGATAGAGATTCTTACACCAGAAGTTAACAAGGGC...AGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
||
| CDS-3UTR CCA 90 bp | AGAGTTTCTTCTTTGTCAAGTAAGTCCCAAGGTACACCTGCTTTCATCTTAGGAGACTCCGTCTGCTTCTaGGTAGCACTGTTCAGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: RVSSLSSKSQGTPAFILGDSVCF*VALFSL Trigger: CAAACTGAACAGTGCTACCCAGAAGCAGACGGAGTC...TCCTAAGATGAAAGCAGGTGTACCTTGGGACTTACTTGACAAAGAAGAAACTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR CCA 90 bp | GTACATTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTCCATTACAGATGTTAGTGGTTTCTaGTCATCCTCTTTTGGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: VHCSCLQTHQKRASDSITDVSGF*SSSFGC Trigger: ACAGCCAAAAGAGGATGACCAGAAACCACTAACATC...TGTAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAATGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| CDS-3UTR CCA 90 bp | AAAGGTCATCTTCCTACATATCCCAGGAGTTTCTATGTAGCTTCTTTAATTTGTAGGGGGCATTGCCAATaGCCATCTGAAGGTAAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: KGHLPTYPRSFYVASLICRGHCQ*PSEGKH Trigger: ATGCTTACCTTCAGATGGCCATTGGCAATGCCCCCT...ACAAATTAAAGAAGCTACATAGAAACTCCTGGGATATGTAGGAAGATGACCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
||
| 3UTR CAA 72 bp | TTTGTACATAGCTTTTTAATTTCGGTTATGAAAAACTaGACTGAGAGCCACATTCGTGAACATGCTTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: FVHSFLISVMKN*TESHIREHASL Trigger: GAGAGAAGCATGTTCACGAATGTGGCTCTCAGTCAAGTTTTTCATAACCGAAATTAAAAAGCTATGTACAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| CDS-3UTR CAA 90 bp | CAAGTGAGGCACAGGGAAGCCAGGAACGCCACAACTCTCCGGCATCCAGTCCCGTACTGCTGGTCAATCTaGTCCAAAGCTGCTTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: QVRHREARNATTLRHPVPYCWSI*SKAAFR Trigger: TCTGAAAGCAGCTTTGGACAAGATTGACCAGCAGTA...CGGGACTGGATGCCGGAGAGTTGTGGCGTTCCTGGCTTCCCTGTGCCTCACTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| CDS CCA 90 bp | TGCGCAACATGCTTGGAAAAGATCTTCTCCCTGCCAGTTCTGGCATaGATACCAACCATGGTGACACCGATAGGCCAGGGGGCATTGCCA | + |
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Preference number: 5 (lower is better) Translates to: CATCLEKIFSLPVLA*IPTMVTPIGQGALP Trigger: TGGCAATGCCCCCTGGCCTATCGGTGTCACCATGGTTGGTATCCATGCCAGAACTGGCAGGGAGAAGATCTTTTCCAAGCATGTTGCGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS-3UTR CAA 90 bp | ACGACACACTGGGATCTTGACAATGGTCATTTCCAACCCCCTTTCCTGAGTGGTGTAGCACTGTTCAGTTaGCCCTGCACACTGCGTTTC | + |
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Preference number: 5 (lower is better) Translates to: TTHWDLDNGHFQPPFLSGVALFS*PCTLRF Trigger: GAAACGCAGTGTGCAGGGCAAACTGAACAGTGCTAC...ACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS-3UTR CAA 90 bp | CAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCTTTCTTCTGATGACCTCTaGCCTAGAAAGAGTCATAGG | + |
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Preference number: 5 (lower is better) Translates to: QFLKSTRTAPGRPHGGALSSDDL*PRKSHR Trigger: CCTATGACTCTTTCTAGGCAAGAGGTCATCAGAAGA...AAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS-3UTR CAA 90 bp | ACGACACACTGGGATCTTGACAATGGTCATTTCCAACCCCCTTTCCTGAGTGGTTACTGCTGGTCAATCTaGTCCAAAGCTGCTTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: TTHWDLDNGHFQPPFLSGYCWSI*SKAAFR Trigger: TCTGAAAGCAGCTTTGGACAAGATTGACCAGCAGTA...ACCACTCAGGAAAGGGGGTTGGAAATGACCATTGTCAAGATCCCAGTGTGTCGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS TCA 90 bp | CCAAGAAGAAACTTCAGGAACTTGGTGATGATGTCCATGTCCTTATaGTCGTCACCTTTCCCTAAGGACTCCCCCAGTGCCTCTAATTCT | + |
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Preference number: 5 (lower is better) Translates to: PRRNFRNLVMMSMSL*SSPFPKDSPSASNS Trigger: AGAATTAGAGGCACTGGGGGAGTCCTTAGGGAAAGGTGACGATCATAAGGACATGGACATCATCACCAAGTTCCTGAAGTTTCTTCTTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS-3UTR CAA 90 bp | AACAACTGGCAGAAGCTATCCTATCTATGCATGCCTTGGACCTTAAGGAGCCCAAGAAACTTCAGGAACTaGGTGATGATGTCCATGTCC | + |
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Preference number: 5 (lower is better) Translates to: NNWQKLSYLCMPWTLRSPRNFRN*VMMSMS Trigger: GGACATGGACATCATCACCAAGTTCCTGAAGTTTCT...TGGGCTCCTTAAGGTCCAAGGCATGCATAGATAGGATAGCTTCTGCCAGTTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| CDS-3UTR CAA 90 bp | CAGTTCTTAAAGTCAACAAGAACTGCACCAGGAAGACCCCACGGTGGAGCTCTTAGTGCTTCTGGCAAATaGTCATTAACCTCTTCAGTC | + |
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Preference number: 5 (lower is better) Translates to: QFLKSTRTAPGRPHGGALSASGK*SLTSSV Trigger: GACTGAAGAGGTTAATGACAATTTGCCAGAAGCACT...AAGAGCTCCACCGTGGGGTCTTCCTGGTGCAGTTCTTGTTGACTTTAAGAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS-3UTR CAA 90 bp | TGGTCATTTCCAACCCCCTTTCCTGAGTGGTGGTTGTCTACACACTTAAACTACTCTTCTGATGACCTCTaGCCTAGAAAGAGTCATAGG | + |
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Preference number: 5 (lower is better) Translates to: WSFPTPFPEWWLSTHLNYSSDDL*PRKSHR Trigger: CCTATGACTCTTTCTAGGCAAGAGGTCATCAGAAGA...GTAGTTTAAGTGTGTAGACAACCACCACTCAGGAAAGGGGGTTGGAAATGACCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS-3UTR CAA 90 bp | GTACATTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTCCATTACAAGTGCTTCTGGCAAATaGTCATTAACCTCTTCAGTC | + |
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Preference number: 5 (lower is better) Translates to: VHCSCLQTHQKRASDSITSASGK*SLTSSV Trigger: GACTGAAGAGGTTAATGACAATTTGCCAGAAGCACT...TGTAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAATGTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| CDS-3UTR CAA 90 bp | AAAGGTCATCTTCCTACATATCCCAGGAGTTTCTATGTAGCTTCTTTAATTTGTGTAGCACTGTTCAGTTaGCCCTGCACACTGCGTTTC | + |
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Preference number: 5 (lower is better) Translates to: KGHLPTYPRSFYVASLICVALFS*PCTLRF Trigger: GAAACGCAGTGTGCAGGGCAAACTGAACAGTGCTAC...ACAAATTAAAGAAGCTACATAGAAACTCCTGGGATATGTAGGAAGATGACCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035721.14 |
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| CDS GCA 72 bp | TTATTTTCCACCAGCAGGTTCCTGTCCTCCACCAGCTaGCGCTTCCGCAGAATCTCGGATTTCAGGATGTCC | + |
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Preference number: 6 (lower is better) Translates to: LFSTSRFLSSTS*RFRRISDFRMS Trigger: GGACATCCTGAAATCCGAGATTCTGCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGGAAAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS CCA 72 bp | TGCTTGGAAAAGATCTTCTCCCTGCCAGTTCTGGCATaGATACCAACCATGGTGACACCGATAGGCCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: CLEKIFSLPVLA*IPTMVTPIGQG Trigger: CCCCTGGCCTATCGGTGTCACCATGGTTGGTATCCATGCCAGAACTGGCAGGGAGAAGATCTTTTCCAAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS TCA 72 bp | AACTTCAGGAACTTGGTGATGATGTCCATGTCCTTATaGTCGTCACCTTTCCCTAAGGACTCCCCCAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: NFRNLVMMSMSL*SSPFPKDSPSA Trigger: GGCACTGGGGGAGTCCTTAGGGAAAGGTGACGATCATAAGGACATGGACATCATCACCAAGTTCCTGAAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS CAA 72 bp | GTTTTTCCTCTGCTAGTTCAAGTTCCAGCACTGGATTaGACGATGTTAGTGGTTTCTGGTCATCCTCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: VFPLLVQVPALD*TMLVVSGHPLL Trigger: CAAAAGAGGATGACCAGAAACCACTAACATCGTCAAATCCAGTGCTGGAACTTGAACTAGCAGAGGAAAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS GCA 72 bp | TTATACTCCACACATTTTGACGGATCTGTAGGAAAGTaGTTCTGGCAAATTGTCATTAACCTCTTCAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: LYSTHFDGSVGK*FWQIVINLFSP Trigger: GGGACTGAAGAGGTTAATGACAATTTGCCAGAAGCACTTTCCTACAGATCCGTCAAAATGTGTGGAGTATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS CAA 72 bp | GATTTGACGATGTTAGTGGTTTCTGGTCATCCTCTTTaGGCTGTATCTTGTAGCCACATCTTTCGTAATACG | + |
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Preference number: 6 (lower is better) Translates to: DLTMLVVSGHPL*AVSCSHIFRNT Trigger: CGTATTACGAAAGATGTGGCTACAAGATACAGCCAAAAGAGGATGACCAGAAACCACTAACATCGTCAAATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 |
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| CDS CAA 90 bp | TGGTCAATCTTGTCCAAAGCTGCTTTCAGATCATTCCTTAAGCCCTaGTTAACTTCTGGTGTAAGAATCTCTATCTTCCTTAAACGCTGG | + |
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Preference number: 6 (lower is better) Translates to: WSILSKAAFRSFLKP*LTSGVRISIFLKRW Trigger: CCAGCGTTTAAGGAAGATAGAGATTCTTACACCAGAAGTTAACAAGGGCTTAAGGAATGATCTGAAAGCAGCTTTGGACAAGATTGACCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 ENSMUST00000192470.2 |
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| CDS CAA 72 bp | TTGTCCAAAGCTGCTTTCAGATCATTCCTTAAGCCCTaGTTAACTTCTGGTGTAAGAATCTCTATCTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LSKAAFRSFLKP*LTSGVRISIFL Trigger: AAGGAAGATAGAGATTCTTACACCAGAAGTTAACAAGGGCTTAAGGAATGATCTGAAAGCAGCTTTGGACAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035721.14 ENSMUST00000152362.7 ENSMUST00000192470.2 |
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