RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PROSER3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036864

Ensembl transcript IDs: ENSMUST00000062708.7, ENSMUST00000108165.8, ENSMUST00000153594.3, ENSMUST00000215288.2

Found 197 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATaGAGGTTCAGGAGATCCAAACTCGAGCCTCCACACTTGCAAGTT +
Preference number: 1 (lower is better)
Translates to: APSISMGQLACPLPL*RFRRSKLEPPHLQV
Trigger: AACTTGCAAGTGTGGAGGCTCGAGTTTGGATCTCCTGAACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR CCA 90 bp GTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTaGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGC +
Preference number: 1 (lower is better)
Translates to: VWKSENFRDSSLPST*IEPRPSPWASWPVR
Trigger: GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR TCA 90 bp GAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATTaGGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCT +
Preference number: 1 (lower is better)
Translates to: EVREFQRFVFAFYLD*APSISMGQLACPLP
Trigger: AGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR GCA 90 bp CCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTaGCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCT +
Preference number: 1 (lower is better)
Translates to: PQLVCGSQRISEIRL*LLPGLSPVHLHGPA
Trigger: AGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGGTGTTGTGTGTGGTGTAGTGTGTATGTaGCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCG +
Preference number: 1 (lower is better)
Translates to: VCVCVCGVVCGVVCM*PTARVWKSENFRDS
Trigger: CGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACTACACCACACACAACACCACACACACACACACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR CCA 90 bp GGTGTTGTGTGTGGTGTAGTGTGTATGTGCCCCACAGCTCGTGTGTaGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGG +
Preference number: 1 (lower is better)
Translates to: GVVCGVVCMCPTARV*KSENFRDSSLPSTW
Trigger: CCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACTACACCACACACAACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR CAA 90 bp GGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATaGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACC +
Preference number: 2 (lower is better)
Translates to: GSQRISEIRLCLLPG*SPVHLHGPAGLSAT
Trigger: GGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR CAA 90 bp CCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTaGCCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGC +
Preference number: 2 (lower is better)
Translates to: PTARVWKSENFRDSS*PSTWIEPRPSPWAS
Trigger: GCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR-3UTR GCA 90 bp GTGTGTGGTGTAGTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTCAGAGATTCGTCTTTaGCTTCTACCTGGATTGAGC +
Preference number: 2 (lower is better)
Translates to: VCGVVCMCPTARVWKSENSEIRL*LLPGLS
Trigger: GCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGA...ATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACTACACCACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR-3UTR GCA 90 bp TATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTCACTTGCAAGTTCTTTaGCCACTGAGCTATCTCCTC +
Preference number: 2 (lower is better)
Translates to: YVPHSSCVEVREFQRFVFHLQVL*PLSYLL
Trigger: GAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTG...AAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR CCA 72 bp TTGCCTTCTACCTGGATTGAGCCCCGTCCATCTCCATaGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGT +
Preference number: 3 (lower is better)
Translates to: LPSTWIEPRPSP*ASWPVRYLYAG
Trigger: ACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR GCA 72 bp ATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATaGAGGTTCAGGAGATCCAAACTCGAGCCTCCACAC +
Preference number: 3 (lower is better)
Translates to: ISMGQLACPLPL*RFRRSKLEPPH
Trigger: GTGTGGAGGCTCGAGTTTGGATCTCCTGAACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR TCA 72 bp GAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATTaGGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGT +
Preference number: 3 (lower is better)
Translates to: EFQRFVFAFYLD*APSISMGQLAC
Trigger: ACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR-3UTR CAA 90 bp CCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCTCCTCAACCGCATTCTaGAGGACCTGGAAGGTGACC +
Preference number: 3 (lower is better)
Translates to: PHLQVLCPLSYLLSPGKTSSTAF*RTWKVT
Trigger: GGTCACCTTCCAGGTCCTCAAGAATGCGGTTGAGGA...GGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
3UTR CCA 72 bp TCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTaGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGG +
Preference number: 3 (lower is better)
Translates to: SENFRDSSLPST*IEPRPSPWASW
Trigger: CCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR GCA 72 bp AGATCCAAACTCGAGCCTCCACACTTGCAAGTTCTTTaGCCACTGAGCTATCTCCTCAGCCCAGGAAAAACC +
Preference number: 3 (lower is better)
Translates to: RSKLEPPHLQVL*PLSYLLSPGKT
Trigger: GGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGGCTCGAGTTTGGATCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR TCA 72 bp AACTCGAGCCTCCACACTTGCAAGTTCTTTGCCCACTaGGCTATCTCCTCAGCCCAGGAAAAACCAGAATTT +
Preference number: 3 (lower is better)
Translates to: NSSLHTCKFFAH*AISSAQEKPEF
Trigger: AAATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGGCTCGAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR GCA 72 bp GTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTaGCTTCTACCTGGATTGAGCCCCGTCCATCTCCAT +
Preference number: 3 (lower is better)
Translates to: VCGSQRISEIRL*LLPGLSPVHLH
Trigger: ATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR CCA 72 bp TGTGGTGTAGTGTGTATGTGCCCCACAGCTCGTGTGTaGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCT +
Preference number: 3 (lower is better)
Translates to: CGVVCMCPTARV*KSENFRDSSLP
Trigger: AGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACTACACCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCGGTGCAGGGATGGCCTaGGATGGCCCCGGGGCTCCC +
Preference number: 4 (lower is better)
Translates to: LPGLSPVHLHGPAGLSATGAGMA*DGPGAP
Trigger: GGGAGCCCCGGGGCCATCCCAGGCCATCCCTGCACC...GGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGTTCAGGTGCAGGGATGGCCTaGGATGGCCCCGGGGCTCCC +
Preference number: 4 (lower is better)
Translates to: PRPSPWASWPVRYLYAGSGAGMA*DGPGAP
Trigger: GGGAGCCCCGGGGCCATCCCAGGCCATCCCTGCACC...TGAACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCGGGTGGAGCGGAGGTTaGGGGCCCTGGGATGCAGAC +
Preference number: 4 (lower is better)
Translates to: LPGLSPVHLHGPAGLSATGWSGG*GPWDAD
Trigger: GTCTGCATCCCAGGGCCCCCAACCTCCGCTCCACCC...GGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp ACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCGCTGGCGGTCCTCTCTaGTCGTGGGCTGAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: TWIEPRPSPWASWPVRYLAGGPL*SWAELG
Trigger: GCCAAGCTCAGCCCACGAGCAGAGAGGACCGCCAGC...GAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp CTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCCCACCAAAAGTCAGCTaGGGTCGGGCCTGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: LPGLSPVHLHGPAGLSATPPKVS*GRACRL
Trigger: CAGCCTGCAGGCCCGACCTCAGCTGACTTTTGGTGG...GGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCAGAGGCCATCGGAGCTaGTGGGGAAGGAGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: PSTWIEPRPSPWASWPVRRGHRS*WGRRSC
Trigger: GCAGCTCCTCCTTCCCCATCAGCTCCGATGGCCTCT...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCCGGAGCTCTGCCCTCTaGGCCCTTAGCAGCTGCAAC +
Preference number: 4 (lower is better)
Translates to: PSTWIEPRPSPWASWPVRRSSAL*ALSSCN
Trigger: GTTGCAGCTGCTAAGGGCTCAGAGGGCAGAGCTCCG...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp ACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCCGGAGCTCTGCCCTCTaGGCCCTTAGCAGCTGCAAC +
Preference number: 4 (lower is better)
Translates to: TWIEPRPSPWASWPVRYLRSSAL*ALSSCN
Trigger: GTTGCAGCTGCTAAGGGCTCAGAGGGCAGAGCTCCG...GAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp GAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGTGGTCCTCTCTGCTCGTaGGCTGAGCTTGGCGGAACC +
Preference number: 4 (lower is better)
Translates to: EPRPSPWASWPVRYLYAGGPLCS*AELGGT
Trigger: GGTTCCGCCAAGCTCAGCCCACGAGCAGAGAGGACC...ACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp GAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGTAGCTGTAGCCGGCTGTaGATCCCCAGCGTCAGCTGG +
Preference number: 4 (lower is better)
Translates to: EPRPSPWASWPVRYLYAGSCSRL*IPSVSW
Trigger: CCAGCTGACGCTGGGGATCCACAGCCGGCTACAGCT...ACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCGAGGCTGGGCCACACTaGCACATGGTGCAGTGCAGT +
Preference number: 4 (lower is better)
Translates to: PSTWIEPRPSPWASWPVREAGPH*HMVQCS
Trigger: ACTGCACTGCACCATGTGGCAGTGTGGCCCAGCCTC...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp ACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCGGTCAAGGGGTCACCTaGTCCCATCCTGGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: TWIEPRPSPWASWPVRYLGQGVT*SHPGCR
Trigger: TCTGCACCCAGGATGGGAGCAGGTGACCCCTTGACC...GAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp ACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTCTCTGCTCGTGGGCTaGGCTTGGCGGAACCTGTTT +
Preference number: 4 (lower is better)
Translates to: TWIEPRPSPWASWPVRYLSLLVG*AWRNLF
Trigger: AAACAGGTTCCGCCAAGCTCAGCCCACGAGCAGAGA...GAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp GAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGTCTCATCGGAACTGGCTaGTGTGGCCTTGGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: EPRPSPWASWPVRYLYAGLIGTG*CGLGSL
Trigger: CAAGCTCCCAAGGCCACAGCAGCCAGTTCCGATGAG...ACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTGGCTGCTGTGGCCTTaGGAGCTTGTGGCCTTTGAG +
Preference number: 4 (lower is better)
Translates to: PSTWIEPRPSPWASWPVRWLLWP*ELVAFE
Trigger: CTCAAAGGCCACAAGCTCCCAAGGCCACAGCAGCCA...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCAACACAGGATCTTCCTaGAACTCGCTGCCGTCCGAG +
Preference number: 4 (lower is better)
Translates to: PSTWIEPRPSPWASWPVRNTGSS*NSLPSE
Trigger: CTCGGACGGCAGCGAGTTTCAGGAAGATCCTGTGTT...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTTCACCAGCTCCTGCTaGAAGGTGACCACTCGAGTC +
Preference number: 4 (lower is better)
Translates to: PSTWIEPRPSPWASWPVRFTSSC*KVTTRV
Trigger: GACTCGAGTGGTCACCTTGCAGCAGGAGCTGGTGAA...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp GAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGTCACACTGCCACATGGTaGAGTGCAGTTAGGCTGGGT +
Preference number: 4 (lower is better)
Translates to: EPRPSPWASWPVRYLYAGHTATW*SAVRLG
Trigger: ACCCAGCCTAACTGCACTGCACCATGTGGCAGTGTG...ACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTACTTTGTCCCTCAGTaGTACTGGCTGGGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: LPGLSPVHLHGPAGLSATYFVPQ*YWLGKG
Trigger: CCCCTTCCCCAGCCAGTACCACTGAGGGACAAAGTA...GGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp AGGGAGGTTCCTTCCCTCCTCAACCGCATTCTTGAGGACCTGGAAGGTGACCTGCCACCAAAAGTCAGCTaGGGTCGGGCCTGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: REVPSLLNRILEDLEGDLPPKVS*GRACRL
Trigger: CAGCCTGCAGGCCCGACCTCAGCTGACTTTTGGTGG...CAGGTCACCTTCCAGGTCCTCAAGAATGCGGTTGAGGAGGGAAGGAACCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR TCA 90 bp CCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGTTCACGCAGAACTTTGGCTTaGGAAGGGATGGCCTGGACT +
Preference number: 4 (lower is better)
Translates to: PRPSPWASWPVRYLYAGSRRTLA*EGMAWT
Trigger: AGTCCAGGCCATCCCTTCTCAAGCCAAAGTTCTGCG...TGAACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp CCTCCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAACGAGGCTGGGCGGGGTaGAGGGATGGCCTGGGATGG +
Preference number: 4 (lower is better)
Translates to: PPHLQVLCPLSYLLSPGKRGWAG*RDGLGW
Trigger: CCATCCCAGGCCATCCCTGCACCCCGCCCAGCCTCG...TTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp CCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGTTCATCTGGTGAGACGAAGTaGTCACCCTCCTTGGCTTGG +
Preference number: 4 (lower is better)
Translates to: PRPSPWASWPVRYLYAGSSGETK*SPSLAW
Trigger: CCAAGCCAAGGAGGGTGAGCACTTCGTCTCACCAGA...TGAACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp GAGCCTCCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAGGAGGTTGGGGGCCCTaGGATGCAGACCTGGGGAGT +
Preference number: 4 (lower is better)
Translates to: EPPHLQVLCPLSYLLSPGGGWGP*DADLGS
Trigger: ACTCCCCAGGTCTGCATCCCAGGGCCCCCAACCTCC...TCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCGCATTCTTGAGGACCTaGAAGGTGACCTGGCTAGAG +
Preference number: 4 (lower is better)
Translates to: LPGLSPVHLHGPAGLSATAFLRT*KVTWLE
Trigger: CTCTAGCCAGGTCACCTTCCAGGTCCTCAAGAATGC...GGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp CCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTCTCTGCTTTACTTTCTaGAGAGGCGCAGAAGCCAGA +
Preference number: 4 (lower is better)
Translates to: PGLSPVHLHGPAGLSATSLCFTF*RGAEAR
Trigger: TCTGGCTTCTGCGCCTCTTCAGAAAGTAAAGCAGAG...AGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTGGCTTGAGAAGGGATaGCCTGGACTTTCCGGAAAT +
Preference number: 4 (lower is better)
Translates to: LPGLSPVHLHGPAGLSATWLEKG*PGLSGN
Trigger: ATTTCCGGAAAGTCCAGGCCATCCCTTCTCAAGCCA...GGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCAGAAGTTTGGTGGCCTaGGATAGCAAGTCCTCGGAA +
Preference number: 4 (lower is better)
Translates to: PSTWIEPRPSPWASWPVRRSLVA*DSKSSE
Trigger: TTCCGAGGACTTGCTATCCCAGGCCACCAAACTTCT...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCCCCGGGTCTTTAGTGTaGTCCAAGAGGAGAGATAAC +
Preference number: 4 (lower is better)
Translates to: PSTWIEPRPSPWASWPVRPGSLV*SKRRDN
Trigger: GTTATCTCTCCTCTTGGACCACACTAAAGACCCGGG...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp AGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATTGAGCCCCGTCCGAGGCTGGGCGGGGTaGAGGGATGGCCTGGGATGG +
Preference number: 4 (lower is better)
Translates to: SQRISEIRLCLLPGLSPVRGWAG*RDGLGW
Trigger: CCATCCCAGGCCATCCCTGCACCCCGCCCAGCCTCG...GACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp CCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGTTCAGACTTTCCGGAAATCTaGCTCAGATGGAGGCGTATC +
Preference number: 4 (lower is better)
Translates to: PRPSPWASWPVRYLYAGSDFPEI*LRWRRI
Trigger: GATACGCCTCCATCTGAGGCAGATTTCCGGAAAGTC...TGAACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTCTCCGCTGCCGCCATTaGTATAAAATGTCATCCTCA +
Preference number: 4 (lower is better)
Translates to: PGLSPVHLHGPAGLSATSLRCRH*YKMSSS
Trigger: TGAGGATGACATTTTATACCAATGGCGGCAGCGGAG...AGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGCTGTAGCCGGCTGTaGATCCCCAGCGTCAGCTGG +
Preference number: 4 (lower is better)
Translates to: PHLQVLCPLSYLLSPGKTSCSRL*IPSVSW
Trigger: CCAGCTGACGCTGGGGATCCACAGCCGGCTACAGCT...GGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTAAGAGGAGAGATAACTaGGCATCCACCTTTTCTGCT +
Preference number: 4 (lower is better)
Translates to: PGLSPVHLHGPAGLSATSKRRDN*ASTFSA
Trigger: AGCAGAAAAGGTGGATGCCCAGTTATCTCTCCTCTT...AGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CCA 90 bp GCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTTTGTCGGGCCTGCAGGCTaGCGGTCCTCTCTGCTCGTG +
Preference number: 4 (lower is better)
Translates to: ASSLPTELSPQPRKNQNFVGPAG*RSSLLV
Trigger: CACGAGCAGAGAGGACCGCCAGCCTGCAGGCCCGAC...AAAATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp ACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCGTCGGGCCTGCAGGCTaGCGGTCCTCTCTGCTCGTG +
Preference number: 4 (lower is better)
Translates to: TARVWKSENFRDSSLPSTVGPAG*RSSLLV
Trigger: CACGAGCAGAGAGGACCGCCAGCCTGCAGGCCCGAC...GGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp AGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGGGTGGAGCGGAGGTTaGGGGCCCTGGGATGCAGAC +
Preference number: 4 (lower is better)
Translates to: SSCVEVREFQRFVFAFYLGWSGG*GPWDAD
Trigger: GTCTGCATCCCAGGGCCCCCAACCTCCGCTCCACCC...CAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp GTGTGTGGTGTAGTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATGCTCCTGCTGCAAGGTaGCCACTCGAGTCTGCTGTA +
Preference number: 4 (lower is better)
Translates to: VCGVVCMCPTARVWKSENAPAAR*PLESAV
Trigger: TACAGCAGACTCGAGTGGTCACCTTGCAGCAGGAGC...ATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACTACACCACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp CCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCGCTCCTGCTGCAAGGTaGCCACTCGAGTCTGCTGTA +
Preference number: 4 (lower is better)
Translates to: PHLQVLCPLSYLLSPGKTAPAAR*PLESAV
Trigger: TACAGCAGACTCGAGTGGTCACCTTGCAGCAGGAGC...GGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp AGGGAGGTTCCTTCCCTCCTCAACCGCATTCTTGAGGACCTGGAAGGTGACCTGCTCTGCTTTACTTTCTaGAGAGGCGCAGAAGCCAGA +
Preference number: 4 (lower is better)
Translates to: REVPSLLNRILEDLEGDLLCFTF*RGAEAR
Trigger: TCTGGCTTCTGCGCCTCTTCAGAAAGTAAAGCAGAG...CAGGTCACCTTCCAGGTCCTCAAGAATGCGGTTGAGGAGGGAAGGAACCTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR TCA 90 bp GGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATTGAGCCCCAGAGGCCATCGGAGCTaGTGGGGAAGGAGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: GSQRISEIRLCLLPGLSPRGHRS*WGRRSC
Trigger: GCAGCTCCTCCTTCCCCATCAGCTCCGATGGCCTCT...GGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp GTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGGTGTGGAGAGGGCCCTaGAAGAGGTGGCCTCTCCAT +
Preference number: 4 (lower is better)
Translates to: VCMCPTARVWKSENFRDSVWRGP*KRWPLH
Trigger: ATGGAGAGGCCACCTCTTTCAGGGCCCTCTCCACAC...CGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp GTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTCCAAGGATTGGCCTGTaGGGCCCAGAGAACCCCGTG +
Preference number: 4 (lower is better)
Translates to: VCAPQLVCGSQRISEIRLPRIGL*GPENPV
Trigger: CACGGGGTTCTCTGGGCCCCACAGGCCAATCCTTGG...AAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp TTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTGGAGGTTGGGGGCCCTaGGATGCAGACCTGGGGAGT +
Preference number: 4 (lower is better)
Translates to: LQVLCPLSYLLSPGKTRIGGWGP*DADLGS
Trigger: ACTCCCCAGGTCTGCATCCCAGGGCCCCCAACCTCC...AATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp GCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTTCACCCTCCTTGGCTTaGGGCCCACCTTCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: APQLVCGSQRISEIRLCLSPSLA*GPPSWA
Trigger: AGCCCAAGAAGGTGGGCCCCAAGCCAAGGAGGGTGA...AAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR CAA 72 bp AGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATaGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTG +
Preference number: 4 (lower is better)
Translates to: RISEIRLCLLPG*SPVHLHGPAGL
Trigger: CAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp CTTTATTTTTACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGGCCTTGCTGCGCTTaGGCAGCCTGGCAGCTCGGC +
Preference number: 4 (lower is better)
Translates to: LYFYSVCVCVCVCVCVCVRPCCA*AAWQLG
Trigger: GCCGAGCTGCCAGGCTGCTCAAGCGCAGCAAGGCCT...CACACACACACACACACACACACACACACACACACACACAGAGTAAAAATAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp CCTCCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAACGCAGAACTTTGGCTTaGGAAGGGATGGCCTGGACT +
Preference number: 4 (lower is better)
Translates to: PPHLQVLCPLSYLLSPGKRRTLA*EGMAWT
Trigger: AGTCCAGGCCATCCCTTCTCAAGCCAAAGTTCTGCG...TTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp TTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTTCCCTCCTCAACCGCATTCTTGAGGTTCACCAGCTCCTaGTGCAAGGTGACCACTCGA +
Preference number: 4 (lower is better)
Translates to: FKVVWTQGRFLPSSTAFLRFTSS*CKVTTR
Trigger: TCGAGTGGTCACCTTGCAGCAGGAGCTGGTGAACCT...CAAGAATGCGGTTGAGGAGGGAAGGAACCTCCCTTGAGTCCAGACGACTTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR GCA 90 bp CCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGGTTCACCAGCTCCTaGTGCAAGGTGACCACTCGA +
Preference number: 4 (lower is better)
Translates to: PHLQVLCPLSYLLSPGKTRFTSS*CKVTTR
Trigger: TCGAGTGGTCACCTTGCAGCAGGAGCTGGTGAACCT...GGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp AGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATTGAGCCCCGTCGAGGCTGGGCCACACTaGCACATGGTGCAGTGCAGT +
Preference number: 4 (lower is better)
Translates to: SQRISEIRLCLLPGLSPVEAGPH*HMVQCS
Trigger: ACTGCACTGCACCATGTGGCAGTGTGGCCCAGCCTC...GACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp GCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTTTGGTCCTCTCTGCTCGTaGGCTGAGCTTGGCGGAACC +
Preference number: 4 (lower is better)
Translates to: ASSLPTELSPQPRKNQNFGPLCS*AELGGT
Trigger: GGTTCCGCCAAGCTCAGCCCACGAGCAGAGAGGACC...AAAATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp TTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTCCAAGGATTGGCCTGTaGGGCCCAGAGAACCCCGTG +
Preference number: 4 (lower is better)
Translates to: LQVLCPLSYLLSPGKTRIPRIGL*GPENPV
Trigger: CACGGGGTTCTCTGGGCCCCACAGGCCAATCCTTGG...AATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp TTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTTCCCTCCTCAACCGCATTCTTGCCAGTTCTGGTTTCTTaGTGGCCCAAAGGGTTGTCC +
Preference number: 4 (lower is better)
Translates to: FKVVWTQGRFLPSSTAFLPVLVS*WPKGLS
Trigger: GGACAACCCTTTGGGCCATCAAGAAACCAGAACTGG...CAAGAATGCGGTTGAGGAGGGAAGGAACCTCCCTTGAGTCCAGACGACTTTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR TCA 90 bp GGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATTGAGCCCCTGGGGAAGGGGTCCATaGACTAGATGGCCAGGACTC +
Preference number: 4 (lower is better)
Translates to: GSQRISEIRLCLLPGLSPWGRGP*TRWPGL
Trigger: GAGTCCTGGCCATCTAGTTCATGGACCCCTTCCCCA...GGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp GGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTAGGCCTTGCTGCGCTTaGGCAGCCTGGCAGCTCGGC +
Preference number: 4 (lower is better)
Translates to: GKTRIFLIQSRLDSREVPRPCCA*AAWQLG
Trigger: GCCGAGCTGCCAGGCTGCTCAAGCGCAGCAAGGCCT...AGGAACCTCCCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR TCA 90 bp ACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCGTGTGGAGAGGGCCCTaGAAGAGGTGGCCTCTCCAT +
Preference number: 4 (lower is better)
Translates to: TARVWKSENFRDSSLPSTVWRGP*KRWPLH
Trigger: ATGGAGAGGCCACCTCTTTCAGGGCCCTCTCCACAC...GGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp GTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGAACACAGGATCTTCCTaGAACTCGCTGCCGTCCGAG +
Preference number: 4 (lower is better)
Translates to: VCMCPTARVWKSENFRDSNTGSS*NSLPSE
Trigger: CTCGGACGGCAGCGAGTTTCAGGAAGATCCTGTGTT...CGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp AGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTTCCCTCCTCCGGAACTGGCTGCTGTaGCCTTGGGAGCTTGTGGCC +
Preference number: 4 (lower is better)
Translates to: RIFLIQSRLDSREVPSLLRNWLL*PWELVA
Trigger: GGCCACAAGCTCCCAAGGCCACAGCAGCCAGTTCCG...GAGGAGGGAAGGAACCTCCCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CCA 90 bp TTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTGTCCCTCAGTGGTACTaGCTGGGGAAGGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: LQVLCPLSYLLSPGKTRIVPQWY*LGKGSM
Trigger: CATGGACCCCTTCCCCAGCCAGTACCACTGAGGGAC...AATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp ACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCGTCCCTCAGTGGTACTaGCTGGGGAAGGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: TARVWKSENFRDSSLPSTVPQWY*LGKGSM
Trigger: CATGGACCCCTTCCCCAGCCAGTACCACTGAGGGAC...GGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp TTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTTGTGAGGGAGGAGGCTaGGCCACACTGCCACATGGT +
Preference number: 4 (lower is better)
Translates to: LQVLCPLSYLLSPGKTRICEGGG*ATLPHG
Trigger: ACCATGTGGCAGTGTGGCCCAGCCTCCTCCCTCACA...AATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp TATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTTCACCCTCCTTGGCTTaGGGCCCACCTTCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: YVPHSSCVEVREFQRFVFSPSLA*GPPSWA
Trigger: AGCCCAAGAAGGTGGGCCCCAAGCCAAGGAGGGTGA...AAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp TTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTTGCGGGACTCTGTCTTaGACCCACGCCGAGACTCAG +
Preference number: 4 (lower is better)
Translates to: LQVLCPLSYLLSPGKTRICGTLS*THAETQ
Trigger: CTGAGTCTCGGCGTGGGTCCAAGACAGAGTCCCGCA...AATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp GGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATTGAGCCCCGGGAGCTGGGGTAGTTaGAGTAGAGGTAGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: GSQRISEIRLCLLPGLSPGSWGS*SRGRWY
Trigger: GTACCACCTACCTCTACTTCAACTACCCCAGCTCCC...GGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp TTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTGCTGGGAGGGTGACTTaGCTTTTGCGGGACTCTGTC +
Preference number: 4 (lower is better)
Translates to: LQVLCPLSYLLSPGKTRIAGRVT*LLRDSV
Trigger: GACAGAGTCCCGCAAAAGTCAAGTCACCCTCCCAGC...AATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp TATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTCTCATCGGAACTGGCTaGTGTGGCCTTGGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: YVPHSSCVEVREFQRFVFLIGTG*CGLGSL
Trigger: CAAGCTCCCAAGGCCACAGCAGCCAGTTCCGATGAG...AAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp GCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTTTCCAGGTTCCATCACCTaGGCCCTGGAGAGACTGTTC +
Preference number: 4 (lower is better)
Translates to: ASSLPTELSPQPRKNQNFPGSIT*ALERLF
Trigger: GAACAGTCTCTCCAGGGCGCAGGTGATGGAACCTGG...AAAATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp AGTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCTCTGGTGAGACGAAGTaGTCACCCTCCTTGGCTTGG +
Preference number: 4 (lower is better)
Translates to: SVYVPHSSCVEVREFQRFSGETK*SPSLAW
Trigger: CCAAGCCAAGGAGGGTGAGCACTTCGTCTCACCAGA...GAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CTTTATTTTTACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGGAACTGGCTGCTGTaGCCTTGGGAGCTTGTGGCC +
Preference number: 4 (lower is better)
Translates to: LYFYSVCVCVCVCVCVCVRNWLL*PWELVA
Trigger: GGCCACAAGCTCCCAAGGCCACAGCAGCCAGTTCCG...CACACACACACACACACACACACACACACACACACACACAGAGTAAAAATAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CCTCCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAACCCGGGTCTTTAGTGTaGTCCAAGAGGAGAGATAAC +
Preference number: 4 (lower is better)
Translates to: PPHLQVLCPLSYLLSPGKPGSLV*SKRRDN
Trigger: GTTATCTCTCCTCTTGGACCACACTAAAGACCCGGG...TTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
3UTR CAA 72 bp GAGATCCAAACTCGAGCCTCCACACTTGCAAGTTCTTaGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAAC +
Preference number: 4 (lower is better)
Translates to: EIQTRASTLASS*PTELSPQPRKN
Trigger: GTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGGCTCGAGTTTGGATCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp GTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTCCAGTTCTGGTTTCTTaGTGGCCCAAAGGGTTGTCC +
Preference number: 4 (lower is better)
Translates to: VCAPQLVCGSQRISEIRLPVLVS*WPKGLS
Trigger: GGACAACCCTTTGGGCCATCAAGAAACCAGAACTGG...AAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp AGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGGGAGCTGGGGTAGTTaGAGTAGAGGTAGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: SSCVEVREFQRFVFAFYLGSWGS*SRGRWY
Trigger: GTACCACCTACCTCTACTTCAACTACCCCAGCTCCC...CAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp AGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTTCCCTCCTCGCTGGGAGGGTGACTTaGCTTTTGCGGGACTCTGTC +
Preference number: 4 (lower is better)
Translates to: RIFLIQSRLDSREVPSLLAGRVT*LLRDSV
Trigger: GACAGAGTCCCGCAAAAGTCAAGTCACCCTCCCAGC...GAGGAGGGAAGGAACCTCCCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR GCA 90 bp GTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGGACTTTCCGGAAATCTaGCTCAGATGGAGGCGTATC +
Preference number: 4 (lower is better)
Translates to: VCMCPTARVWKSENFRDSDFPEI*LRWRRI
Trigger: GATACGCCTCCATCTGAGGCAGATTTCCGGAAAGTC...CGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp TTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTTTTCTAATTCAGGTCAAGGGGTCACCTaGTCCCATCCTGGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: LPTELSPQPRKNQNFSNSGQGVT*SHPGCR
Trigger: TCTGCACCCAGGATGGGAGCAGGTGACCCCTTGACC...TGAATTAGAAAAATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CCA 90 bp GTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTCACACCAGTGGGAGATaGACCTGTCACAGCAGATCT +
Preference number: 4 (lower is better)
Translates to: VCAPQLVCGSQRISEIRLHTSGR*TCHSRS
Trigger: AGATCTGCTGTGACAGGTCCATCTCCCACTGGTGTG...AAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp GTGTGTGGTGTAGTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATCTCCGCTGCCGCCATTaGTATAAAATGTCATCCTCA +
Preference number: 4 (lower is better)
Translates to: VCGVVCMCPTARVWKSENLRCRH*YKMSSS
Trigger: TGAGGATGACATTTTATACCAATGGCGGCAGCGGAG...ATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACTACACCACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp ATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGAAGATACCCAAGGATTaGCCTGTGGGGCCCAGAGAA +
Preference number: 4 (lower is better)
Translates to: MCPTARVWKSENFRDSSLKIPKD*PVGPRE
Trigger: TTCTCTGGGCCCCACAGGCCAATCCTTGGGTATCTT...CAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp AGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTTCCCTCCTCAGTGCTCACCCTCCTTaGCTTGGGGCCCACCTTCTT +
Preference number: 4 (lower is better)
Translates to: RIFLIQSRLDSREVPSLLSAHPP*LGAHLL
Trigger: AAGAAGGTGGGCCCCAAGCCAAGGAGGGTGAGCACT...GAGGAGGGAAGGAACCTCCCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
3UTR CAA 72 bp CGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTaGCCTTCTACCTGGATTGAGCCCCGTCCATCTCCA +
Preference number: 4 (lower is better)
Translates to: RVWKSENFRDSS*PSTWIEPRPSP
Trigger: TGGAGATGGACGGGGCTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp GTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGGATTGAGCACACTGCCACATGGTaGAGTGCAGTTAGGCTGGGT +
Preference number: 4 (lower is better)
Translates to: VWKSENFRDSSLPSTWIEHTATW*SAVRLG
Trigger: ACCCAGCCTAACTGCACTGCACCATGTGGCAGTGTG...CTCAATCCAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp AGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCTGCACACCAGTGGGAGATaGACCTGTCACAGCAGATCT +
Preference number: 4 (lower is better)
Translates to: SSCVEVREFQRFVFAFYLHTSGR*TCHSRS
Trigger: AGATCTGCTGTGACAGGTCCATCTCCCACTGGTGTG...CAGGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp GGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTTGTGAGGGAGGAGGCTaGGCCACACTGCCACATGGT +
Preference number: 4 (lower is better)
Translates to: GKTRIFLIQSRLDSREVPCEGGG*ATLPHG
Trigger: ACCATGTGGCAGTGTGGCCCAGCCTCCTCCCTCACA...AGGAACCTCCCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CCA 90 bp CTTTATTTTTACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGCTCACCCTCCTTaGCTTGGGGCCCACCTTCTT +
Preference number: 4 (lower is better)
Translates to: LYFYSVCVCVCVCVCVCVSAHPP*LGAHLL
Trigger: AAGAAGGTGGGCCCCAAGCCAAGGAGGGTGAGCACT...CACACACACACACACACACACACACACACACACACACACAGAGTAAAAATAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp AGTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCTGGCTTGAGAAGGGATaGCCTGGACTTTCCGGAAAT +
Preference number: 4 (lower is better)
Translates to: SVYVPHSSCVEVREFQRFWLEKG*PGLSGN
Trigger: ATTTCCGGAAAGTCCAGGCCATCCCTTCTCAAGCCA...GAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp TATCTCCTCAGCCCAGGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTGCGGGACTCTGTCTTaGACCCACGCCGAGACTCAG +
Preference number: 4 (lower is better)
Translates to: YLLSPGKTRIFLIQSRLDCGTLS*THAETQ
Trigger: CTGAGTCTCGGCGTGGGTCCAAGACAGAGTCCCGCA...GTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCCTGGGCTGAGGAGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CCA 90 bp CCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAAGAGGAGAGATAACTaGGCATCCACCTTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: PHLQVLCPLSYLLSPGKTKRRDN*ASTFLF
Trigger: GAAAAGGAAGGTGGATGCCCAGTTATCTCTCCTCTT...GGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215288.2
CDS-3UTR TCA 90 bp TATCTCCTCAGCCCAGGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTGGGGAAGGGGTCCATaGACTAGATGGCCAGGACTC +
Preference number: 4 (lower is better)
Translates to: YLLSPGKTRIFLIQSRLDWGRGP*TRWPGL
Trigger: GAGTCCTGGCCATCTAGTTCATGGACCCCTTCCCCA...GTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCCTGGGCTGAGGAGATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR GCA 90 bp GTGTGTGGTGTAGTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATCGTTGTCAATTAAGTTaGAGGGTGGAGAGGTACTTT +
Preference number: 4 (lower is better)
Translates to: VCGVVCMCPTARVWKSENRCQLS*RVERYF
Trigger: AAAGTACCTCTCCACCCTGCAACTTAATTGACAACG...ATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACTACACCACACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR GCA 90 bp CTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCCAGGTTCCATCACCTaGGCCCTGGAGAGACTGTTC +
Preference number: 4 (lower is better)
Translates to: LSYLLSPGKTRIFLIQSRPGSIT*ALERLF
Trigger: GAACAGTCTCTCCAGGGCGCAGGTGATGGAACCTGG...ACGACTTTGAATTAGAAAAATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR GCA 90 bp GGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTTTCACCAGCTCCTGCTaGAAGGTGACCACTCGAGTC +
Preference number: 4 (lower is better)
Translates to: GKTRIFLIQSRLDSREVPFTSSC*KVTTRV
Trigger: GACTCGAGTGGTCACCTTGCAGCAGGAGCTGGTGAA...AGGAACCTCCCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CCA 90 bp TATCTCCTCAGCCCAGGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTACTTTGTCCCTCAGTaGTACTGGCTGGGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: YLLSPGKTRIFLIQSRLDYFVPQ*YWLGKG
Trigger: CCCCTTCCCCAGCCAGTACCACTGAGGGACAAAGTA...GTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCCTGGGCTGAGGAGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CCA 90 bp GTGTGTGGTGTAGTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATACCTGTTTATGTACTTaGCTACTATTGAGTCCTCGT +
Preference number: 4 (lower is better)
Translates to: VCGVVCMCPTARVWKSENTCLCT*LLLSPR
Trigger: ACGAGGACTCAATAGTAGCCAAGTACATAAACAGGT...ATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACTACACCACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CCA 90 bp CCTCAGCCCAGGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGAAGATACCCAAGGATTaGCCTGTGGGGCCCAGAGAA +
Preference number: 4 (lower is better)
Translates to: PQPRKNQNFSNSKSSGLKKIPKD*PVGPRE
Trigger: TTCTCTGGGCCCCACAGGCCAATCCTTGGGTATCTT...CTTGAGTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCCTGGGCTGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CCA 90 bp GGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTAGAAGTTTGGTGGCCTaGGATAGCAAGTCCTCGGAA +
Preference number: 4 (lower is better)
Translates to: GKTRIFLIQSRLDSREVPRSLVA*DSKSSE
Trigger: TTCCGAGGACTTGCTATCCCAGGCCACCAAACTTCT...AGGAACCTCCCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR GCA 90 bp CAGCCCAGGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGGACGTTGTCAATTAAGTTaGAGGGTGGAGAGGTACTTT +
Preference number: 4 (lower is better)
Translates to: QPRKNQNFSNSKSSGLKGRCQLS*RVERYF
Trigger: AAAGTACCTCTCCACCCTGCAACTTAATTGACAACG...TCCCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCCTGGGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CCA 90 bp CTCAGCCCAGGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGACCTGTTTATGTACTTaGCTACTATTGAGTCCTCGT +
Preference number: 4 (lower is better)
Translates to: LSPGKTRIFLIQSRLDSRTCLCT*LLLSPR
Trigger: ACGAGGACTCAATAGTAGCCAAGTACATAAACAGGT...CCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCCTGGGCTGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CAA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCGGGGTGGAGCGGAGGTaGGGGGCCCTGGGATGCAGA +
Preference number: 5 (lower is better)
Translates to: PSTWIEPRPSPWASWPVRGVERR*GALGCR
Trigger: TCTGCATCCCAGGGCCCCCAACCTCCGCTCCACCCC...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS GCA 90 bp CGTGGTGAGGGCCGGCATCCGAGGCAACACCCAGGTTCCATCACCTaGGCCCTGGAGAGACTGTTCAAGCTTCCTCCGCTGCCGCCATTG +
Preference number: 5 (lower is better)
Translates to: RGEGRHPRQHPGSIT*ALERLFKLPPLPPL
Trigger: CAATGGCGGCAGCGGAGGAAGCTTGAACAGTCTCTCCAGGGCGCAGGTGATGGAACCTGGGTGTTGCCTCGGATGCCGGCCCTCACCACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp TTCTTGGGCTGGATAGAGCTACTCAGCTCAGGGATGGCTGGTCCCTaGGGGGTGTCAGGTAGTGGGAGGGTGGAAGCGGGGGTGGAAGCG +
Preference number: 5 (lower is better)
Translates to: FLGWIELLSSGMAGP*GVSGSGRVEAGVEA
Trigger: CGCTTCCACCCCCGCTTCCACCCTCCCACTACCTGACACCCCCCAGGGACCAGCCATCCCTGAGCTGAGTAGCTCTATCCAGCCCAAGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS GCA 90 bp TGGGTGTCCTGGGAACCAAGATTCACGGCAGAGACAGGAGGAGTCTaGGTGGTGAGGGCCGGCATCCGAGGCAACACCCAGGTTCCATCA +
Preference number: 5 (lower is better)
Translates to: WVSWEPRFTAETGGV*VVRAGIRGNTQVPS
Trigger: TGATGGAACCTGGGTGTTGCCTCGGATGCCGGCCCTCACCACGCAGACTCCTCCTGTCTCTGCCGTGAATCTTGGTTCCCAGGACACCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp TGCCGCCATTGGTATAAAATGTCATCCTCAGGCTTAAGTGTTGCCTaGGACGAGGCTGGGCGGGGTGCAGGGATGGCCTGGGATGGCCCC +
Preference number: 5 (lower is better)
Translates to: CRHWYKMSSSGLSVA*DEAGRGAGMAWDGP
Trigger: GGGGCCATCCCAGGCCATCCCTGCACCCCGCCCAGCCTCGTCCCAGGCAACACTTAAGCCTGAGGATGACATTTTATACCAATGGCGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp GGAGGAGGCTGGGCCACACTGCCACATGGTGCAGTGCAGTTAGGCTaGGTGTCCTGGGAACCAAGATTCACGGCAGAGACAGGAGGAGTC +
Preference number: 5 (lower is better)
Translates to: GGGWATLPHGAVQLG*VSWEPRFTAETGGV
Trigger: GACTCCTCCTGTCTCTGCCGTGAATCTTGGTTCCCAGGACACCCAGCCTAACTGCACTGCACCATGTGGCAGTGTGGCCCAGCCTCCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp GGCTTGAGAAGGGATGGCCTGGACTTTCCGGAAATCTGCCTCAGATaGAGGCGTATCCTCCGGGCTGTCCGGGAACAGCCGAGCTGTCAC +
Preference number: 5 (lower is better)
Translates to: GLRRDGLDFPEICLR*RRILRAVREQPSCH
Trigger: GTGACAGCTCGGCTGTTCCCGGACAGCCCGGAGGATACGCCTCCATCTGAGGCAGATTTCCGGAAAGTCCAGGCCATCCCTTCTCAAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp CCTGAAACTCGCTGCCGTCCGAGTCTTCCGCAGCCTGTAGAAGTTTaGTGGCCTGGGATAGCAAGTCCTCGGAAGGGGCGTGGCTTGAGG +
Preference number: 5 (lower is better)
Translates to: PETRCRPSLPQPVEV*WPGIASPRKGRGLR
Trigger: CCTCAAGCCACGCCCCTTCCGAGGACTTGCTATCCCAGGCCACCAAACTTCTACAGGCTGCGGAAGACTCGGACGGCAGCGAGTTTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp CCTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTCGCAGAACTTTGGCTaGAGAAGGGATGGCCTGGAC +
Preference number: 5 (lower is better)
Translates to: PSTWIEPRPSPWASWPVRSQNFG*RRDGLD
Trigger: GTCCAGGCCATCCCTTCTCAAGCCAAAGTTCTGCGA...GCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp AGGGCCGGCATCCGAGGCAACACCCAGGTTCCATCACCTGCGCCCTaGAGAGACTGTTCAAGCTTCCTCCGCTGCCGCCATTGGTATAAA +
Preference number: 5 (lower is better)
Translates to: RAGIRGNTQVPSPAP*RDCSSFLRCRHWYK
Trigger: TTTATACCAATGGCGGCAGCGGAGGAAGCTTGAACAGTCTCTCCAGGGCGCAGGTGATGGAACCTGGGTGTTGCCTCGGATGCCGGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp GAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCTATGCAGGTGTGGCCTTTGAGACCTaGTGGCTCCAGTTCTGGTTT +
Preference number: 5 (lower is better)
Translates to: EPRPSPWASWPVRYLYAGVAFET*WLQFWF
Trigger: AAACCAGAACTGGAGCCACAAGGTCTCAAAGGCCAC...ACCTGCATAGAGGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS GCA 90 bp ACCAAAAGTCAGCTGAGGTCGGGCCTGCAGGCTGGCGGTCCTCTCTaGTCGTGGGCTGAGCTTGGCGGAACCTGTTTATGTACTTGGCTA +
Preference number: 5 (lower is better)
Translates to: TKSQLRSGLQAGGPL*SWAELGGTCLCTWL
Trigger: TAGCCAAGTACATAAACAGGTTCCGCCAAGCTCAGCCCACGAGCAGAGAGGACCGCCAGCCTGCAGGCCCGACCTCAGCTGACTTTTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS GCA 90 bp CAGAACTTTGGCTTGAGAAGGGATGGCCTGGACTTTCCGGAAATCTaGCTCAGATGGAGGCGTATCCTCCGGGCTGTCCGGGAACAGCCG +
Preference number: 5 (lower is better)
Translates to: QNFGLRRDGLDFPEI*LRWRRILRAVREQP
Trigger: CGGCTGTTCCCGGACAGCCCGGAGGATACGCCTCCATCTGAGGCAGATTTCCGGAAAGTCCAGGCCATCCCTTCTCAAGCCAAAGTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp GTCTGGCACCGTAGTCTTCTGGTGAGACGAAGTGCTCACCCTCCTTaGCTTGGGGCCCACCTTCTTGGGCTGGATAGAGCTACTCAGCTC +
Preference number: 5 (lower is better)
Translates to: VWHRSLLVRRSAHPP*LGAHLLGLDRATQL
Trigger: GAGCTGAGTAGCTCTATCCAGCCCAAGAAGGTGGGCCCCAAGCCAAGGAGGGTGAGCACTTCGTCTCACCAGAAGACTACGGTGCCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp CTTCTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTGTGGCCTTTGAGACCTaGTGGCTCCAGTTCTGGTTT +
Preference number: 5 (lower is better)
Translates to: LLPGLSPVHLHGPAGLSAVAFET*WLQFWF
Trigger: AAACCAGAACTGGAGCCACAAGGTCTCAAAGGCCAC...AGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp CCTCCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAGAGGCCTTGCTGCGCTaGAGCAGCCTGGCAGCTCGG +
Preference number: 5 (lower is better)
Translates to: PPHLQVLCPLSYLLSPGKEALLR*SSLAAR
Trigger: CCGAGCTGCCAGGCTGCTCAAGCGCAGCAAGGCCTC...TTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp AGGGAGGTTCCTTCCCTCCTCAACCGCATTCTTGAGGACCTGGAAGGTGACCTGAAGTGCTCACCCTCCTaGGCTTGGGGCCCACCTTCT +
Preference number: 5 (lower is better)
Translates to: REVPSLLNRILEDLEGDLKCSPS*AWGPPS
Trigger: AGAAGGTGGGCCCCAAGCCAAGGAGGGTGAGCACTT...CAGGTCACCTTCCAGGTCCTCAAGAATGCGGTTGAGGAGGGAAGGAACCTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS TCA 90 bp CAGGGACCCTCAAAAGCTGTAGTGTCTGGCACCGTAGTCTTCTGGTaGGACGAAGTGCTCACCCTCCTTGGCTTGGGGCCCACCTTCTTG +
Preference number: 5 (lower is better)
Translates to: QGPSKAVVSGTVVFW*DEVLTLLGLGPTFL
Trigger: CAAGAAGGTGGGCCCCAAGCCAAGGAGGGTGAGCACTTCGTCTCACCAGAAGACTACGGTGCCAGACACTACAGCTTTTGAGGGTCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp GCCAGGACTCCTCAGACAGCTCATCGGAACTGGCTGCTGTGGCCTTaGGAGCTTGTGGCCTTTGAGACCTTGTGGCTCCAGTTCTGGTTT +
Preference number: 5 (lower is better)
Translates to: ARTPQTAHRNWLLWP*ELVAFETLWLQFWF
Trigger: AAACCAGAACTGGAGCCACAAGGTCTCAAAGGCCACAAGCTCCCAAGGCCACAGCAGCCAGTTCCGATGAGCTGTCTGAGGAGTCCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS CCA 90 bp GACGAAGATCCCGGGTCTTTAGTGTGGTCCAAGAGGAGAGATAACTaGGCATCCACCTTTTCTGCTGCCGGAGCTCTGCCCTCTGAGCCC +
Preference number: 5 (lower is better)
Translates to: DEDPGSLVWSKRRDN*ASTFSAAGALPSEP
Trigger: GGGCTCAGAGGGCAGAGCTCCGGCAGCAGAAAAGGTGGATGCCCAGTTATCTCTCCTCTTGGACCACACTAAAGACCCGGGATCTTCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
CDS TCA 90 bp AGAGGTACTTTGTCCCTCAGTGGTACTGGCTGGGGAAGGGGTCCATaGACTAGATGGCCAGGACTCCTCAGACAGCTCATCGGAACTGGC +
Preference number: 5 (lower is better)
Translates to: RGTLSLSGTGWGRGP*TRWPGLLRQLIGTG
Trigger: GCCAGTTCCGATGAGCTGTCTGAGGAGTCCTGGCCATCTAGTTCATGGACCCCTTCCCCAGCCAGTACCACTGAGGGACAAAGTACCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp CTACCTGGATTGAGCCCCGTCCATCTCCATGGGCCAGCTGGCCTGTCCGCTACCTCGTTGTCAATTAAGTaGCAGGGTGGAGAGGTACTT +
Preference number: 5 (lower is better)
Translates to: LPGLSPVHLHGPAGLSATSLSIK*QGGEVL
Trigger: AAGTACCTCTCCACCCTGCAACTTAATTGACAACGA...GGTAGCGGACAGGCCAGCTGGCCCATGGAGATGGACGGGGCTCAATCCAGGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp TATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGGGGTGGAGCGGAGGTaGGGGGCCCTGGGATGCAGA +
Preference number: 5 (lower is better)
Translates to: YVPHSSCVEVREFQRFVFGVERR*GALGCR
Trigger: TCTGCATCCCAGGGCCCCCAACCTCCGCTCCACCCC...AAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp CCTGCGCCCTGGAGAGACTGTTCAAGCTTCCTCCGCTGCCGCCATTaGTATAAAATGTCATCCTCAGGCTTAAGTGTTGCCTGGGACGAG +
Preference number: 5 (lower is better)
Translates to: PAPWRDCSSFLRCRH*YKMSSSGLSVAWDE
Trigger: CTCGTCCCAGGCAACACTTAAGCCTGAGGATGACATTTTATACCAATGGCGGCAGCGGAGGAAGCTTGAACAGTCTCTCCAGGGCGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp GAGCCTCCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAGATACCCAAGGATaGGCCTGTGGGGCCCAGAGA +
Preference number: 5 (lower is better)
Translates to: EPPHLQVLCPLSYLLSPGKDTQG*ACGAQR
Trigger: TCTCTGGGCCCCACAGGCCAATCCTTGGGTATCTTT...TCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp CCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAAGTGCTCACCCTCCTaGGCTTGGGGCCCACCTTCT +
Preference number: 5 (lower is better)
Translates to: PHLQVLCPLSYLLSPGKTKCSPS*AWGPPS
Trigger: AGAAGGTGGGCCCCAAGCCAAGGAGGGTGAGCACTT...GGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS TCA 90 bp GTCACAGCAGATCTTCCTGTAGGTTCACCAGCTCCTGCTGCAAGGTaGCCACTCGAGTCTGCTGTAGGCTGTAGCCACCAAAAGTCAGCT +
Preference number: 5 (lower is better)
Translates to: VTADLPVGSPAPAAR*PLESAVGCSHQKSA
Trigger: AGCTGACTTTTGGTGGCTACAGCCTACAGCAGACTCGAGTGGTCACCTTGCAGCAGGAGCTGGTGAACCTACAGGAAGATCTGCTGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS TCA 90 bp CAATGGTCAAGGGGTCACCTGCTCCCATCCTGGGTGCAGACATCTTaGATTCACGTGGTTGGACCTCTAACAGAGTGGATGCCTTTGGAG +
Preference number: 5 (lower is better)
Translates to: QWSRGHLLPSWVQTS*IHVVGPLTEWMPLE
Trigger: CTCCAAAGGCATCCACTCTGTTAGAGGTCCAACCACGTGAATTCAAGATGTCTGCACCCAGGATGGGAGCAGGTGACCCCTTGACCATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS GCA 90 bp GTTCCATCACCTGCGCCCTGGAGAGACTGTTCAAGCTTCCTCCGCTaGCGCCATTGGTATAAAATGTCATCCTCAGGCTTAAGTGTTGCC +
Preference number: 5 (lower is better)
Translates to: VPSPAPWRDCSSFLR*RHWYKMSSSGLSVA
Trigger: GGCAACACTTAAGCCTGAGGATGACATTTTATACCAATGGCGGCAGCGGAGGAAGCTTGAACAGTCTCTCCAGGGCGCAGGTGATGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp CCTCCACACTTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAATGTGGCCTTGGGAGCTaGTGGCCTTTGAGACCTTGT +
Preference number: 5 (lower is better)
Translates to: PPHLQVLCPLSYLLSPGKCGLGS*WPLRPC
Trigger: ACAAGGTCTCAAAGGCCACAAGCTCCCAAGGCCACA...TTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAAGTGTGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp TTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTTCCCTCCTCAACCGCATTCTTGGCTCGTGGGCTGAGCTaGGCGGAACCTGTTTATGTA +
Preference number: 5 (lower is better)
Translates to: FKVVWTQGRFLPSSTAFLARGLS*AEPVYV
Trigger: TACATAAACAGGTTCCGCCAAGCTCAGCCCACGAGC...CAAGAATGCGGTTGAGGAGGGAAGGAACCTCCCTTGAGTCCAGACGACTTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CAA 90 bp TTCAAAGTCGTCTGGACTCAAGGGAGGTTCCTTCCCTCCTCAACCGCATTCTTGTCGCAGAACTTTGGCTaGAGAAGGGATGGCCTGGAC +
Preference number: 5 (lower is better)
Translates to: FKVVWTQGRFLPSSTAFLSQNFG*RRDGLD
Trigger: GTCCAGGCCATCCCTTCTCAAGCCAAAGTTCTGCGA...CAAGAATGCGGTTGAGGAGGGAAGGAACCTCCCTTGAGTCCAGACGACTTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS CCA 90 bp GACTCTGCTTTACTTTCTGAAGAGGCGCAGAAGCCAGAGATGTACTaGACACACCAGTGGGAGATGGACCTGTCACAGCAGATCTTCCTG +
Preference number: 5 (lower is better)
Translates to: DSALLSEEAQKPEMY*THQWEMDLSQQIFL
Trigger: CAGGAAGATCTGCTGTGACAGGTCCATCTCCCACTGGTGTGTCCAGTACATCTCTGGCTTCTGCGCCTCTTCAGAAAGTAAAGCAGAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 90 bp CCTCTCTGCTCGTGGGCTGAGCTTGGCGGAACCTGTTTATGTACTTaGCTACTATTGAGTCCTCGTTGTCAATTAAGTTGCAGGGTGGAG +
Preference number: 5 (lower is better)
Translates to: PLCSWAELGGTCLCT*LLLSPRCQLSCRVE
Trigger: CTCCACCCTGCAACTTAATTGACAACGAGGACTCAATAGTAGCCAAGTACATAAACAGGTTCCGCCAAGCTCAGCCCACGAGCAGAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp TTGCAAGTTCTTTGCCCACTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTTGTGGCCTTGGGAGCTaGTGGCCTTTGAGACCTTGT +
Preference number: 5 (lower is better)
Translates to: LQVLCPLSYLLSPGKTRICGLGS*WPLRPC
Trigger: ACAAGGTCTCAAAGGCCACAAGCTCCCAAGGCCACA...AATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAGTGGGCAAAGAACTTGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp ACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCGTCTTTGCCTTCTACCGCTCGTGGGCTGAGCTaGGCGGAACCTGTTTATGTA +
Preference number: 5 (lower is better)
Translates to: TARVWKSENFRDSSLPSTARGLS*AEPVYV
Trigger: TACATAAACAGGTTCCGCCAAGCTCAGCCCACGAGC...GGTAGAAGGCAAAGACGAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS GCA 90 bp TGTTTATGTACTTGGCTACTATTGAGTCCTCGTTGTCAATTAAGTTaGAGGGTGGAGAGGTACTTTGTCCCTCAGTGGTACTGGCTGGGG +
Preference number: 5 (lower is better)
Translates to: CLCTWLLLSPRCQLS*RVERYFVPQWYWLG
Trigger: CCCCAGCCAGTACCACTGAGGGACAAAGTACCTCTCCACCCTGCAACTTAATTGACAACGAGGACTCAATAGTAGCCAAGTACATAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp AGTGTGTATGTGCCCCACAGCTCGTGTGTGGAAGTCAGAGAATTTCAGAGATTCCCCAGCACAGGTTCTTaGGGATTAGAACTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: SVYVPHSSCVEVREFQRFPSTGS*GLELLL
Trigger: CAACAAGAGTTCTAATCCCAAAGAACCTGTGCTGGG...GAATCTCTGAAATTCTCTGACTTCCACACACGAGCTGTGGGGCACATACACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS-3UTR CAA 90 bp CTGAGCTATCTCCTCAGCCCAGGAAAAACCAGAATTTTTCTAATTCAAAGTCGTAAAGATACCCAAGGATaGGCCTGTGGGGCCCAGAGA +
Preference number: 5 (lower is better)
Translates to: LSYLLSPGKTRIFLIQSRKDTQG*ACGAQR
Trigger: TCTCTGGGCCCCACAGGCCAATCCTTGGGTATCTTT...ACGACTTTGAATTAGAAAAATTCTGGTTTTTCCTGGGCTGAGGAGATAGCTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS-3UTR CAA 90 bp CAGCCCAGGAAAAACCAGAATTTTTCTAATTCAAAGTCGTCTGGACTCAAGGGACCCAGCACAGGTTCTTaGGGATTAGAACTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: QPRKNQNFSNSKSSGLKGPSTGS*GLELLL
Trigger: CAACAAGAGTTCTAATCCCAAAGAACCTGTGCTGGG...TCCCTTGAGTCCAGACGACTTTGAATTAGAAAAATTCTGGTTTTTCCTGGGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108165.8
CDS GCA 72 bp GGCCGGCATCCGAGGCAACACCCAGGTTCCATCACCTaGGCCCTGGAGAGACTGTTCAAGCTTCCTCCGCTG +
Preference number: 6 (lower is better)
Translates to: GRHPRQHPGSIT*ALERLFKLPPL
Trigger: CAGCGGAGGAAGCTTGAACAGTCTCTCCAGGGCGCAGGTGATGGAACCTGGGTGTTGCCTCGGATGCCGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp TGGATAGAGCTACTCAGCTCAGGGATGGCTGGTCCCTaGGGGGTGTCAGGTAGTGGGAGGGTGGAAGCGGGG +
Preference number: 6 (lower is better)
Translates to: WIELLSSGMAGP*GVSGSGRVEAG
Trigger: CCCCGCTTCCACCCTCCCACTACCTGACACCCCCCAGGGACCAGCCATCCCTGAGCTGAGTAGCTCTATCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 72 bp CGGCTGTGGATCCCCAGCGTCAGCTGGGAGGGTGACTaGACTTTTGCGGGACTCTGTCTTGGACCCACGCCG +
Preference number: 6 (lower is better)
Translates to: RLWIPSVSWEGD*TFAGLCLGPTP
Trigger: CGGCGTGGGTCCAAGACAGAGTCCCGCAAAAGTCAAGTCACCCTCCCAGCTGACGCTGGGGATCCACAGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS TCA 72 bp GGCTGTGGATCCCCAGCGTCAGCTGGGAGGGTGACTTaGCTTTTGCGGGACTCTGTCTTGGACCCACGCCGA +
Preference number: 6 (lower is better)
Translates to: GCGSPASAGRVT*LLRDSVLDPRR
Trigger: TCGGCGTGGGTCCAAGACAGAGTCCCGCAAAAGTCAAGTCACCCTCCCAGCTGACGCTGGGGATCCACAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp AGGGATGGCCTGGACTTTCCGGAAATCTGCCTCAGATaGAGGCGTATCCTCCGGGCTGTCCGGGAACAGCCG +
Preference number: 6 (lower is better)
Translates to: RDGLDFPEICLR*RRILRAVREQP
Trigger: CGGCTGTTCCCGGACAGCCCGGAGGATACGCCTCCATCTGAGGCAGATTTCCGGAAAGTCCAGGCCATCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS GCA 72 bp GGCTTGAGAAGGGATGGCCTGGACTTTCCGGAAATCTaGCTCAGATGGAGGCGTATCCTCCGGGCTGTCCGG +
Preference number: 6 (lower is better)
Translates to: GLRRDGLDFPEI*LRWRRILRAVR
Trigger: CCGGACAGCCCGGAGGATACGCCTCCATCTGAGGCAGATTTCCGGAAAGTCCAGGCCATCCCTTCTCAAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp ATCCGAGGCAACACCCAGGTTCCATCACCTGCGCCCTaGAGAGACTGTTCAAGCTTCCTCCGCTGCCGCCAT +
Preference number: 6 (lower is better)
Translates to: IRGNTQVPSPAP*RDCSSFLRCRH
Trigger: ATGGCGGCAGCGGAGGAAGCTTGAACAGTCTCTCCAGGGCGCAGGTGATGGAACCTGGGTGTTGCCTCGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS GCA 72 bp TGGCCAGGACTCCTCAGACAGCTCATCGGAACTGGCTaGTGTGGCCTTGGGAGCTTGTGGCCTTTGAGACCT +
Preference number: 6 (lower is better)
Translates to: WPGLLRQLIGTG*CGLGSLWPLRP
Trigger: AGGTCTCAAAGGCCACAAGCTCCCAAGGCCACAGCAGCCAGTTCCGATGAGCTGTCTGAGGAGTCCTGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS CCA 72 bp CCTCAGACAGCTCATCGGAACTGGCTGCTGTGGCCTTaGGAGCTTGTGGCCTTTGAGACCTTGTGGCTCCAG +
Preference number: 6 (lower is better)
Translates to: PQTAHRNWLLWP*ELVAFETLWLQ
Trigger: CTGGAGCCACAAGGTCTCAAAGGCCACAAGCTCCCAAGGCCACAGCAGCCAGTTCCGATGAGCTGTCTGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS CCA 72 bp TGGAGCTGTAGCCGGCTGTGGATCCCCAGCGTCAGCTaGGAGGGTGACTTGACTTTTGCGGGACTCTGTCTT +
Preference number: 6 (lower is better)
Translates to: WSCSRLWIPSVS*EGDLTFAGLCL
Trigger: AAGACAGAGTCCCGCAAAAGTCAAGTCACCCTCCCAGCTGACGCTGGGGATCCACAGCCGGCTACAGCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 90 bp GGCCCCGGGGCTCCCAGCACAGGTTCTTTGGGATTAGAACTCTTGTaGGAGTCCGGATTGAAGGTCACAGAGCTGGGAGAGAGGCCATCG +
Preference number: 6 (lower is better)
Translates to: GPGAPSTGSLGLELL*ESGLKVTELGERPS
Trigger: CGATGGCCTCTCTCCCAGCTCTGTGACCTTCAATCCGGACTCCAACAAGAGTTCTAATCCCAAAGAACCTGTGCTGGGAGCCCCGGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 90 bp GATGGCCCCGGGGCTCCCAGCACAGGTTCTTTGGGATTAGAACTCTaGTTGGAGTCCGGATTGAAGGTCACAGAGCTGGGAGAGAGGCCA +
Preference number: 6 (lower is better)
Translates to: DGPGAPSTGSLGLEL*LESGLKVTELGERP
Trigger: TGGCCTCTCTCCCAGCTCTGTGACCTTCAATCCGGACTCCAACAAGAGTTCTAATCCCAAAGAACCTGTGCTGGGAGCCCCGGGGCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp AGGACTCCTCAGACAGCTCATCGGAACTGGCTGCTGTaGCCTTGGGAGCTTGTGGCCTTTGAGACCTTGTGG +
Preference number: 6 (lower is better)
Translates to: RTPQTAHRNWLL*PWELVAFETLW
Trigger: CCACAAGGTCTCAAAGGCCACAAGCTCCCAAGGCCACAGCAGCCAGTTCCGATGAGCTGTCTGAGGAGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS CCA 72 bp TGGTATAAAATGTCATCCTCAGGCTTAAGTGTTGCCTaGGACGAGGCTGGGCGGGGTGCAGGGATGGCCTGG +
Preference number: 6 (lower is better)
Translates to: WYKMSSSGLSVA*DEAGRGAGMAW
Trigger: CCAGGCCATCCCTGCACCCCGCCCAGCCTCGTCCCAGGCAACACTTAAGCCTGAGGATGACATTTTATACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp CTGCCACATGGTGCAGTGCAGTTAGGCTGGGTGTCCTaGGAACCAAGATTCACGGCAGAGACAGGAGGAGTC +
Preference number: 6 (lower is better)
Translates to: LPHGAVQLGWVS*EPRFTAETGGV
Trigger: GACTCCTCCTGTCTCTGCCGTGAATCTTGGTTCCCAGGACACCCAGCCTAACTGCACTGCACCATGTGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp TGGGCCACACTGCCACATGGTGCAGTGCAGTTAGGCTaGGTGTCCTGGGAACCAAGATTCACGGCAGAGACA +
Preference number: 6 (lower is better)
Translates to: WATLPHGAVQLG*VSWEPRFTAET
Trigger: TGTCTCTGCCGTGAATCTTGGTTCCCAGGACACCCAGCCTAACTGCACTGCACCATGTGGCAGTGTGGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp CGTAGTCTTCTGGTGAGACGAAGTGCTCACCCTCCTTaGCTTGGGGCCCACCTTCTTGGGCTGGATAGAGCT +
Preference number: 6 (lower is better)
Translates to: RSLLVRRSAHPP*LGAHLLGLDRA
Trigger: AGCTCTATCCAGCCCAAGAAGGTGGGCCCCAAGCCAAGGAGGGTGAGCACTTCGTCTCACCAGAAGACTACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp CCCGGGTCTTTAGTGTGGTCCAAGAGGAGAGATAACTaGGCATCCACCTTTTCTGCTGCCGGAGCTCTGCCC +
Preference number: 6 (lower is better)
Translates to: PGSLVWSKRRDN*ASTFSAAGALP
Trigger: GGGCAGAGCTCCGGCAGCAGAAAAGGTGGATGCCCAGTTATCTCTCCTCTTGGACCACACTAAAGACCCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
CDS CAA 72 bp CAGCTCATCGGAACTGGCTGCTGTGGCCTTGGGAGCTaGTGGCCTTTGAGACCTTGTGGCTCCAGTTCTGGT +
Preference number: 6 (lower is better)
Translates to: QLIGTGCCGLGS*WPLRPCGSSSG
Trigger: ACCAGAACTGGAGCCACAAGGTCTCAAAGGCCACAAGCTCCCAAGGCCACAGCAGCCAGTTCCGATGAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS CAA 72 bp GCCTGGGATGGCCCCGGGGCTCCCAGCACAGGTTCTTaGGGATTAGAACTCTTGTTGGAGTCCGGATTGAAG +
Preference number: 6 (lower is better)
Translates to: AWDGPGAPSTGS*GLELLLESGLK
Trigger: CTTCAATCCGGACTCCAACAAGAGTTCTAATCCCAAAGAACCTGTGCTGGGAGCCCCGGGGCCATCCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS TCA 72 bp TCAAAAGCTGTAGTGTCTGGCACCGTAGTCTTCTGGTaGGACGAAGTGCTCACCCTCCTTGGCTTGGGGCCC +
Preference number: 6 (lower is better)
Translates to: SKAVVSGTVVFW*DEVLTLLGLGP
Trigger: GGGCCCCAAGCCAAGGAGGGTGAGCACTTCGTCTCACCAGAAGACTACGGTGCCAGACACTACAGCTTTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 72 bp ACTCAAGGGAGGTTCCTTCCCTCCTCAACCGCATTCTaGAGGACCTGGAAGGTGACCTGGCTAGAGGAGACG +
Preference number: 6 (lower is better)
Translates to: TQGRFLPSSTAF*RTWKVTWLEET
Trigger: CGTCTCCTCTAGCCAGGTCACCTTCCAGGTCCTCAAGAATGCGGTTGAGGAGGGAAGGAACCTCCCTTGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215288.2
CDS TCA 72 bp GATCTTCCTGTAGGTTCACCAGCTCCTGCTGCAAGGTaGCCACTCGAGTCTGCTGTAGGCTGTAGCCACCAA +
Preference number: 6 (lower is better)
Translates to: DLPVGSPAPAAR*PLESAVGCSHQ
Trigger: TTGGTGGCTACAGCCTACAGCAGACTCGAGTGGTCACCTTGCAGCAGGAGCTGGTGAACCTACAGGAAGATC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp CTGTGGCCTTGGGAGCTTGTGGCCTTTGAGACCTTGTaGCTCCAGTTCTGGTTTCTTGATGGCCCAAAGGGT +
Preference number: 6 (lower is better)
Translates to: LWPWELVAFETL*LQFWFLDGPKG
Trigger: ACCCTTTGGGCCATCAAGAAACCAGAACTGGAGCCACAAGGTCTCAAAGGCCACAAGCTCCCAAGGCCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS CAA 72 bp CTGCTGTGGCCTTGGGAGCTTGTGGCCTTTGAGACCTaGTGGCTCCAGTTCTGGTTTCTTGATGGCCCAAAG +
Preference number: 6 (lower is better)
Translates to: LLWPWELVAFET*WLQFWFLDGPK
Trigger: CTTTGGGCCATCAAGAAACCAGAACTGGAGCCACAAGGTCTCAAAGGCCACAAGCTCCCAAGGCCACAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS CAA 72 bp GGAACTGGCTGCTGTGGCCTTGGGAGCTTGTGGCCTTaGAGACCTTGTGGCTCCAGTTCTGGTTTCTTGATG +
Preference number: 6 (lower is better)
Translates to: GTGCCGLGSLWP*RPCGSSSGFLM
Trigger: CATCAAGAAACCAGAACTGGAGCCACAAGGTCTCAAAGGCCACAAGCTCCCAAGGCCACAGCAGCCAGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS GCA 72 bp CCTGCGCCCTGGAGAGACTGTTCAAGCTTCCTCCGCTaGCGCCATTGGTATAAAATGTCATCCTCAGGCTTA +
Preference number: 6 (lower is better)
Translates to: PAPWRDCSSFLR*RHWYKMSSSGL
Trigger: TAAGCCTGAGGATGACATTTTATACCAATGGCGGCAGCGGAGGAAGCTTGAACAGTCTCTCCAGGGCGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp TTACTTTCTGAAGAGGCGCAGAAGCCAGAGATGTACTaGACACACCAGTGGGAGATGGACCTGTCACAGCAG +
Preference number: 6 (lower is better)
Translates to: LLSEEAQKPEMY*THQWEMDLSQQ
Trigger: CTGCTGTGACAGGTCCATCTCCCACTGGTGTGTCCAGTACATCTCTGGCTTCTGCGCCTCTTCAGAAAGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 72 bp TGGCCTTTGAGACCTTGTGGCTCCAGTTCTGGTTTCTaGATGGCCCAAAGGGTTGTCCACCTTGGGGAACAT +
Preference number: 6 (lower is better)
Translates to: WPLRPCGSSSGF*MAQRVVHLGEH
Trigger: ATGTTCCCCAAGGTGGACAACCCTTTGGGCCATCAAGAAACCAGAACTGGAGCCACAAGGTCTCAAAGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000153594.3
ENSMUST00000215288.2
CDS CAA 72 bp GGTTCTTTGGGATTAGAACTCTTGTTGGAGTCCGGATaGAAGGTCACAGAGCTGGGAGAGAGGCCATCGGAG +
Preference number: 6 (lower is better)
Translates to: GSLGLELLLESG*KVTELGERPSE
Trigger: CTCCGATGGCCTCTCTCCCAGCTCTGTGACCTTCAATCCGGACTCCAACAAGAGTTCTAATCCCAAAGAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 72 bp GCTCCCAGCACAGGTTCTTTGGGATTAGAACTCTTGTaGGAGTCCGGATTGAAGGTCACAGAGCTGGGAGAG +
Preference number: 6 (lower is better)
Translates to: APSTGSLGLELL*ESGLKVTELGE
Trigger: CTCTCCCAGCTCTGTGACCTTCAATCCGGACTCCAACAAGAGTTCTAATCCCAAAGAACCTGTGCTGGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 90 bp ACAATGGTCAAGGGGTCACCTGCTCCCATCCTGGGTGCAGACATCTaGAATTCACGTGGTTGGACCTCTAACAGAGTGGATGCCTTTGGA +
Preference number: 6 (lower is better)
Translates to: TMVKGSPAPILGADI*NSRGWTSNRVDAFG
Trigger: TCCAAAGGCATCCACTCTGTTAGAGGTCCAACCACGTGAATTCAAGATGTCTGCACCCAGGATGGGAGCAGGTGACCCCTTGACCATTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp CCCATCCTGGGTGCAGACATCTTGAATTCACGTGGTTaGACCTCTAACAGAGTGGATGCCTTTGGAGCTGTA +
Preference number: 6 (lower is better)
Translates to: PILGADILNSRG*TSNRVDAFGAV
Trigger: TACAGCTCCAAAGGCATCCACTCTGTTAGAGGTCCAACCACGTGAATTCAAGATGTCTGCACCCAGGATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp TGGAGAGACTGTTCAAGCTTCCTCCGCTGCCGCCATTaGTATAAAATGTCATCCTCAGGCTTAAGTGTTGCC +
Preference number: 6 (lower is better)
Translates to: WRDCSSFLRCRH*YKMSSSGLSVA
Trigger: GGCAACACTTAAGCCTGAGGATGACATTTTATACCAATGGCGGCAGCGGAGGAAGCTTGAACAGTCTCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS TCA 72 bp GACGAGTTCCATGAGTTCAGACTCTGCTTTACTTTCTaGAGAGGCGCAGAAGCCAGAGATGTACTGGACACA +
Preference number: 6 (lower is better)
Translates to: DEFHEFRLCFTF*RGAEARDVLDT
Trigger: TGTGTCCAGTACATCTCTGGCTTCTGCGCCTCTTCAGAAAGTAAAGCAGAGTCTGAACTCATGGAACTCGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 90 bp CTGTTTATGTACTTGGCTACTATTGAGTCCTCGTTGTCAATTAAGTaGCAGGGTGGAGAGGTACTTTGTCCCTCAGTGGTACTGGCTGGG +
Preference number: 6 (lower is better)
Translates to: LFMYLATIESSLSIK*QGGEVLCPSVVLAG
Trigger: CCCAGCCAGTACCACTGAGGGACAAAGTACCTCTCCACCCTGCAACTTAATTGACAACGAGGACTCAATAGTAGCCAAGTACATAAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 90 bp TCGTGGGCTGAGCTTGGCGGAACCTGTTTATGTACTTGGCTACTATaGAGTCCTCGTTGTCAATTAAGTTGCAGGGTGGAGAGGTACTTT +
Preference number: 6 (lower is better)
Translates to: SWAELGGTCLCTWLL*SPRCQLSCRVERYF
Trigger: AAAGTACCTCTCCACCCTGCAACTTAATTGACAACGAGGACTCAATAGTAGCCAAGTACATAAACAGGTTCCGCCAAGCTCAGCCCACGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CCA 72 bp TCGTGGGCTGAGCTTGGCGGAACCTGTTTATGTACTTaGCTACTATTGAGTCCTCGTTGTCAATTAAGTTGC +
Preference number: 6 (lower is better)
Translates to: SWAELGGTCLCT*LLLSPRCQLSC
Trigger: GCAACTTAATTGACAACGAGGACTCAATAGTAGCCAAGTACATAAACAGGTTCCGCCAAGCTCAGCCCACGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2
CDS CAA 72 bp GAGCTTGGCGGAACCTGTTTATGTACTTGGCTACTATaGAGTCCTCGTTGTCAATTAAGTTGCAGGGTGGAG +
Preference number: 6 (lower is better)
Translates to: ELGGTCLCTWLL*SPRCQLSCRVE
Trigger: CTCCACCCTGCAACTTAATTGACAACGAGGACTCAATAGTAGCCAAGTACATAAACAGGTTCCGCCAAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062708.7
ENSMUST00000108165.8
ENSMUST00000215288.2