Pregenerated sensors for PRORSD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032673Ensembl transcript IDs: ENSMUST00000039900.4, ENSMUST00000133103.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCATCAGATCCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGGATCTCTGCAAGTGCAGTCAGTGCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: GIRSVTDGCEPPCGC*ELNSGSLQVQSVLL Trigger: TAAGAGCACTGACTGCACTTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGGATCTGATGCC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039900.4 ENSMUST00000133103.2 |
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| 3UTR CCA 90 bp | ACAAAGGTGTGGCACAGCCTTGACCAACTTTCAGTTTTTCTAGCATaGCTGTTTCATCAGCAAACCGAAGATTTCCACTCCCAACTCCTA | + |
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Preference number: 1 (lower is better) Translates to: TKVWHSLDQLSVFLA*LFHQQTEDFHSQLL Trigger: TAGGAGTTGGGAGTGGAAATCTTCGGTTTGCTGATGAAACAGCCATGCTAGAAAAACTGAAAGTTGGTCAAGGCTGTGCCACACCTTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR TCA 90 bp | AAGTCTTCAGGACTTAACCCCATTGTTGCAGCATTAGTCATTGGGTaGAAGTACACTTTCTCATGTCCACCTTCCAGAAAAGCTGAATCC | + |
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Preference number: 1 (lower is better) Translates to: KSSGLNPIVAALVIG*KYTFSCPPSRKAES Trigger: GGATTCAGCTTTTCTGGAAGGTGGACATGAGAAAGTGTACTTTCACCCAATGACTAATGCTGCAACAATGGGGTTAAGTCCTGAAGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR CAA 90 bp | AGATCCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCAGGATCTCTGCAAGTGCAGTCAGTGCTCTTAACCGCT | + |
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Preference number: 2 (lower is better) Translates to: RSVTDGCEPPCGCWE*NSGSLQVQSVLLTA Trigger: AGCGGTTAAGAGCACTGACTGCACTTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGGATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039900.4 ENSMUST00000133103.2 |
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| 3UTR-3UTR GCA 90 bp | GAGTGCAGAGCAGGTAAAACAAGCATGGAACCTCTGGGGCAAAGGCAATCATTACTGCTGTCAAAATTCTaGCCACTGTGGAGTCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: ECRAGKTSMEPLGQRQSLLLSKF*PLWSLP Trigger: AGGAAGACTCCACAGTGGGCAGAATTTTGACAGCAG...TAATGATTGCCTTTGCCCCAGAGGTTCCATGCTTGTTTTACCTGCTCTGCACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCTCAGGGGAGTATTTTGTTCTGGATCAAATCAAGTTCCCAACCAGGACTCATGCCTCTCTGTCATCTaGACCAGTTCTGATGCTATA | + |
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Preference number: 2 (lower is better) Translates to: LLRGVFCSGSNQVPNQDSCLSVI*TSSDAI Trigger: TATAGCATCAGAACTGGTTCAGATGACAGAGAGGCA...TGAGTCCTGGTTGGGAACTTGATTTGATCCAGAACAAAATACTCCCCTGAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR-3UTR TCA 90 bp | TATAACCTAGGGTATTTGGAACAATGTCTCTTTTACATGTTGGAGATTCTGAGAGGTGTGGCACAGCCTTaGCCAACTTTCAGTTTTTCT | + |
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Preference number: 2 (lower is better) Translates to: YNLGYLEQCLFYMLEILRGVAQP*PTFSFS Trigger: AGAAAAACTGAAAGTTGGTCAAGGCTGTGCCACACC...TCTCAGAATCTCCAACATGTAAAAGAGACATTGTTCCAAATACCCTAGGTTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR-3UTR TCA 90 bp | GGCAAGAGCAATTTCTATATTCTAGCCTATGTCAGATCCTCAATGAATAAAGAGACATGTTGGAGATTCTaGGAACCTAGTAGGTTCAGT | + |
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Preference number: 2 (lower is better) Translates to: GKSNFYILAYVRSSMNKETCWRF*EPSRFS Trigger: ACTGAACCTACTAGGTTCTCAGAATCTCCAACATGT...CTCTTTATTCATTGAGGATCTGACATAGGCTAGAATATAGAAATTGCTCTTGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR-3UTR CCA 90 bp | AATTATGGGATCATGTCCTGTAGCCTTCACAAATATGAGAAAGTCTTCAGGACTCTATTAGATGTTAGCTaGCCTAGAACTCAGAGATCA | + |
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Preference number: 2 (lower is better) Translates to: NYGIMSCSLHKYEKVFRTLLDVS*PRTQRS Trigger: TGATCTCTGAGTTCTAGGCCAGCTAACATCTAATAG...AGTCCTGAAGACTTTCTCATATTTGTGAAGGCTACAGGACATGATCCCATAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR-3UTR GCA 90 bp | ATCATTCTTCTGGAGCCTGTTTTCACTATCAACATGATATCCAAGGTCTACAAAGACTGTACCATTACATaGAGACAAAATGCTCATACA | + |
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Preference number: 2 (lower is better) Translates to: IILLEPVFTINMISKVYKDCTIT*RQNAHT Trigger: TGTATGAGCATTTTGTCTGCATGTAATGGTACAGTC...TTTGTAGACCTTGGATATCATGTTGATAGTGAAAACAGGCTCCAGAAGAATGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR TCA 72 bp | CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTaGACTCAGGATCTCTGCAAGTGCAGTCAGTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: QMVVSHHVVAGN*TQDLCKCSQCS Trigger: AGAGCACTGACTGCACTTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039900.4 ENSMUST00000133103.2 |
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| 3UTR GCA 72 bp | AGATCCGTTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGAATTGAACTCAGGATCTCTGCAAGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: RSVTDGCEPPCG*WELNSGSLQVQ Trigger: CTGCACTTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGGATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039900.4 ENSMUST00000133103.2 |
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| 3UTR CCA 72 bp | TCCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGGATCTCTGCAAGTGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: SVTDGCEPPCGC*ELNSGSLQVQS Trigger: TGACTGCACTTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039900.4 ENSMUST00000133103.2 |
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| 3UTR GCA 72 bp | AAGCAACACAGCTCTTTCCTGGAACTTCATCCAAGCTaGTGTCAAAATTCTGCCCACTGTGGAGTCTTCCTC | + |
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Preference number: 3 (lower is better) Translates to: KQHSSFLELHPS*CQNSAHCGVFL Trigger: GAGGAAGACTCCACAGTGGGCAGAATTTTGACAGCAGCTTGGATGAAGTTCCAGGAAAGAGCTGTGTTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR-3UTR CAA 90 bp | GCAACACAGCTCTTTCCTGGAACTTCATCCAAGCTGCTGTCAAAATTCTGCCCAAGGTGTGGCACAGCCTaGACCAACTTTCAGTTTTTC | + |
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Preference number: 3 (lower is better) Translates to: ATQLFPGTSSKLLSKFCPRCGTA*TNFQFF Trigger: GAAAAACTGAAAGTTGGTCAAGGCTGTGCCACACCT...TGGGCAGAATTTTGACAGCAGCTTGGATGAAGTTCCAGGAAAGAGCTGTGTTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCTCAGGGGAGTATTTTGTTCTGGATCAAATCAAGTTCCCAACCAGGACTCATGTGGTTGCTGGGAATaGAACTCAGGATCTCTGCAA | + |
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Preference number: 3 (lower is better) Translates to: LLRGVFCSGSNQVPNQDSCGCWE*NSGSLQ Trigger: TTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACA...TGAGTCCTGGTTGGGAACTTGATTTGATCCAGAACAAAATACTCCCCTGAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR TCA 72 bp | AGGGTAGAGGACAAAGGGAACTGCCTCTCTGTCATCTaGACCAGTTCTGATGCTATATTTTGCAGCCGAGTT | + |
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Preference number: 3 (lower is better) Translates to: RVEDKGNCLSVI*TSSDAIFCSRV Trigger: AACTCGGCTGCAAAATATAGCATCAGAACTGGTTCAGATGACAGAGAGGCAGTTCCCTTTGTCCTCTACCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR GCA 72 bp | TTTCCTGGAACTTCATCCAAGCTGCTGTCAAAATTCTaGCCACTGTGGAGTCTTCCTCATTTAGTCCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: FPGTSSKLLSKF*PLWSLPHLVLP Trigger: AGGCAGGACTAAATGAGGAAGACTCCACAGTGGGCAGAATTTTGACAGCAGCTTGGATGAAGTTCCAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR TCA 72 bp | TCATCGCAGAAGAGTGACAAAGGTGTGGCACAGCCTTaGCCAACTTTCAGTTTTTCTAGCATGGCTGTTTCA | + |
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Preference number: 3 (lower is better) Translates to: SSQKSDKGVAQP*PTFSFSSMAVS Trigger: TGAAACAGCCATGCTAGAAAAACTGAAAGTTGGTCAAGGCTGTGCCACACCTTTGTCACTCTTCTGCGATGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR CCA 72 bp | TGGCACAGCCTTGACCAACTTTCAGTTTTTCTAGCATaGCTGTTTCATCAGCAAACCGAAGATTTCCACTCC | + |
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Preference number: 3 (lower is better) Translates to: WHSLDQLSVFLA*LFHQQTEDFHS Trigger: GGAGTGGAAATCTTCGGTTTGCTGATGAAACAGCCATGCTAGAAAAACTGAAAGTTGGTCAAGGCTGTGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR CCA 72 bp | TGTCCTCACAGATCTGCTCAGGGGAGTATTTTGTTCTaGATCAAATCAAGTTCCCAACCAGGACTCACCATA | + |
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Preference number: 3 (lower is better) Translates to: CPHRSAQGSILF*IKSSSQPGLTI Trigger: TATGGTGAGTCCTGGTTGGGAACTTGATTTGATCCAGAACAAAATACTCCCCTGAGCAGATCTGTGAGGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR CCA 72 bp | ACTTCATCCAAGCTGCTGTCAAAATTCTGCCCACTGTaGAGTCTTCCTCATTTAGTCCTGCCTAGAAATGTC | + |
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Preference number: 3 (lower is better) Translates to: TSSKLLSKFCPL*SLPHLVLPRNV Trigger: GACATTTCTAGGCAGGACTAAATGAGGAAGACTCCACAGTGGGCAGAATTTTGACAGCAGCTTGGATGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR-3UTR CAA 90 bp | GCAACACAGCTCTTTCCTGGAACTTCATCCAAGCTGCTGTCAAAATTCTGCCCATGCTCCTTTCAGATGTaGAATATGAGGCATCATTTC | + |
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Preference number: 3 (lower is better) Translates to: ATQLFPGTSSKLLSKFCPCSFQM*NMRHHF Trigger: GAAATGATGCCTCATATTCAACATCTGAAAGGAGCA...TGGGCAGAATTTTGACAGCAGCTTGGATGAAGTTCCAGGAAAGAGCTGTGTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR TCA 72 bp | GGACTTAACCCCATTGTTGCAGCATTAGTCATTGGGTaGAAGTACACTTTCTCATGTCCACCTTCCAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: GLNPIVAALVIG*KYTFSCPPSRK Trigger: TTTTCTGGAAGGTGGACATGAGAAAGTGTACTTTCACCCAATGACTAATGCTGCAACAATGGGGTTAAGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR TCA 72 bp | AAAGTACACTTTCTCATGTCCACCTTCCAGAAAAGCTaGATCCAAGACAAATTTAACATCTCCATCATCGCA | + |
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Preference number: 3 (lower is better) Translates to: KVHFLMSTFQKS*IQDKFNISIIA Trigger: TGCGATGATGGAGATGTTAAATTTGTCTTGGATTCAGCTTTTCTGGAAGGTGGACATGAGAAAGTGTACTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR-3UTR CAA 90 bp | GGCAAGAGCAATTTCTATATTCTAGCCTATGTCAGATCCTCAATGAATAAAGAGCCAACTCCTAACTGCTaGCCAAGATCATTTAAATTG | + |
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Preference number: 3 (lower is better) Translates to: GKSNFYILAYVRSSMNKEPTPNC*PRSFKL Trigger: CAATTTAAATGATCTTGGCAAGCAGTTAGGAGTTGG...CTCTTTATTCATTGAGGATCTGACATAGGCTAGAATATAGAAATTGCTCTTGCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| 3UTR TCA 72 bp | ATATCATTCTTCTGGAGCCTGTTTTCACTATCAACATaGTATCCAAGGTCTACAAATTCTGATTCAGGTCCT | + |
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Preference number: 3 (lower is better) Translates to: ISFFWSLFSLST*YPRSTNSDSGP Trigger: AGGACCTGAATCAGAATTTGTAGACCTTGGATATCATGTTGATAGTGAAAACAGGCTCCAGAAGAATGATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| CDS-3UTR GCA 90 bp | ATGTTAGCTGGCCTAGAACTCAGAGATCAGCCTGCTCTGCCTAAAGTGCTAGGCGCTCCACGACCTCCGTaGGAATGGCGAGGGCGCCGA | + |
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Preference number: 4 (lower is better) Translates to: MLAGLELRDQPALPKVLGAPRPP*EWRGRR Trigger: TCGGCGCCCTCGCCATTCGCACGGAGGTCGTGGAGC...GCCTAGCACTTTAGGCAGAGCAGGCTGATCTCTGAGTTCTAGGCCAGCTAACAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039900.4 ENSMUST00000133103.2 |
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| CDS-3UTR GCA 90 bp | GAGTGCAGAGCAGGTAAAACAAGCATGGAACCTCTGGGGCAAAGGCAATCATTAGCTCCACGACCTCCGTaGGAATGGCGAGGGCGCCGA | + |
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Preference number: 4 (lower is better) Translates to: ECRAGKTSMEPLGQRQSLAPRPP*EWRGRR Trigger: TCGGCGCCCTCGCCATTCGCACGGAGGTCGTGGAGC...TAATGATTGCCTTTGCCCCAGAGGTTCCATGCTTGTTTTACCTGCTCTGCACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| CDS-3UTR TCA 90 bp | ATGTTAGCTGGCCTAGAACTCAGAGATCAGCCTGCTCTGCCTAAAGTGCTAGGCGGTGTGGCACAGCCTTaGCCAACTTTCAGTTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: MLAGLELRDQPALPKVLGGVAQP*PTFSFS Trigger: AGAAAAACTGAAAGTTGGTCAAGGCTGTGCCACACC...GCCTAGCACTTTAGGCAGAGCAGGCTGATCTCTGAGTTCTAGGCCAGCTAACAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039900.4 |
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| CDS-3UTR CCA 90 bp | TGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGATCTCTGCAAGTGCAGAGAGTGACAAAGGTGTaGCACAGCCTTGACCAACTT | + |
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Preference number: 4 (lower is better) Translates to: CEPPCGCWELNSGSLQVQRVTKV*HSLDQL Trigger: AAGTTGGTCAAGGCTGTGCCACACCTTTGTCACTCT...CTGCACTTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039900.4 |
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| CDS-3UTR CCA 90 bp | GCAACACAGCTCTTTCCTGGAACTTCATCCAAGCTGCTGTCAAAATTCTGCCCAAAACACTTTTGTTTGTaGCACAAGCGGGAGCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: ATQLFPGTSSKLLSKFCPKHFCL*HKRERA Trigger: GGCCCGCTCCCGCTTGTGCCACAAACAAAAGTGTTT...TGGGCAGAATTTTGACAGCAGCTTGGATGAAGTTCCAGGAAAGAGCTGTGTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| CDS-3UTR CCA 90 bp | ATGTTAGCTGGCCTAGAACTCAGAGATCAGCCTGCTCTGCCTAAAGTGCTAGGCTGCAGCATTAGTCATTaGGTGAAAGTACACTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: MLAGLELRDQPALPKVLGCSISH*VKVHFL Trigger: GAGAAAGTGTACTTTCACCCAATGACTAATGCTGCA...GCCTAGCACTTTAGGCAGAGCAGGCTGATCTCTGAGTTCTAGGCCAGCTAACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039900.4 |
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| CDS-3UTR CCA 90 bp | TCCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGATCAGTTTTTCTAGCATaGCTGTTTCATCAGCAAACC | + |
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Preference number: 4 (lower is better) Translates to: SVTDGCEPPCGCWELNSGSVFLA*LFHQQT Trigger: GGTTTGCTGATGAAACAGCCATGCTAGAAAAACTGA...TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039900.4 |
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| 3UTR CAA 72 bp | GGAACCTCTGGGGCAAAGGCAATCATTAGTTTCATTTaGCCTTTCAGTAACACAAGTTGGTACAAATTAGTT | + |
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Preference number: 4 (lower is better) Translates to: GTSGAKAIISFI*PFSNTSWYKLV Trigger: AACTAATTTGTACCAACTTGTGTTACTGAAAGGCAAAATGAAACTAATGATTGCCTTTGCCCCAGAGGTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| CDS CCA 90 bp | AATAAATTCGTGTCATCTCGGGATGCTCCACGACCTCCGTGCGAATaGCGAGGGCGCCGAGCCTCTGTTCTAACTCAGCCCGCAGCTCCG | + |
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Preference number: 5 (lower is better) Translates to: NKFVSSRDAPRPPCE*RGRRASVLTQPAAP Trigger: CGGAGCTGCGGGCTGAGTTAGAACAGAGGCTCGGCGCCCTCGCCATTCGCACGGAGGTCGTGGAGCATCCCGAGATGACACGAATTTATT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| CDS-3UTR CAA 90 bp | TGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGATCTCTGCAAGTGCAGTGTAAACACTTTTGTTaGTGGCACAAGCGGGAGCGG | + |
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Preference number: 5 (lower is better) Translates to: CEPPCGCWELNSGSLQVQCKHFC*WHKRER Trigger: CCGCTCCCGCTTGTGCCACAAACAAAAGTGTTTACA...CTGCACTTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| CDS-3UTR CAA 90 bp | TGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGATCTCTGCAAGTGCAGAGGTGTGGCACAGCCTaGACCAACTTTCAGTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: CEPPCGCWELNSGSLQVQRCGTA*TNFQFF Trigger: GAAAAACTGAAAGTTGGTCAAGGCTGTGCCACACCT...CTGCACTTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039900.4 |
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| CDS TCA 90 bp | GCCAAAAGAGGAACTGTAGTTTTAAACAGCTCTCAGTGTGAGTGCTaGAATAAATTCGTGTCATCTCGGGATGCTCCACGACCTCCGTGC | + |
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Preference number: 5 (lower is better) Translates to: AKRGTVVLNSSQCEC*NKFVSSRDAPRPPC Trigger: GCACGGAGGTCGTGGAGCATCCCGAGATGACACGAATTTATTTCAGCACTCACACTGAGAGCTGTTTAAAACTACAGTTCCTCTTTTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| CDS-3UTR CAA 90 bp | GGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGATCTCTGCAAGTGTGCTCCTTTCAGATGTaGAATATGAGGCATCATTTC | + |
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Preference number: 5 (lower is better) Translates to: GCEPPCGCWELNSGSLQVCSFQM*NMRHHF Trigger: GAAATGATGCCTCATATTCAACATCTGAAAGGAGCA...CACTTGCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039900.4 |
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| CDS-3UTR CAA 90 bp | TCCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCAACTCCTAACTGCTaGCCAAGATCATTTAAATTG | + |
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Preference number: 5 (lower is better) Translates to: SVTDGCEPPCGCWELNSGPTPNC*PRSFKL Trigger: CAATTTAAATGATCTTGGCAAGCAGTTAGGAGTTGG...TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039900.4 |
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| CDS CCA 72 bp | GTGTCATCTCGGGATGCTCCACGACCTCCGTGCGAATaGCGAGGGCGCCGAGCCTCTGTTCTAACTCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: VSSRDAPRPPCE*RGRRASVLTQP Trigger: GGGCTGAGTTAGAACAGAGGCTCGGCGCCCTCGCCATTCGCACGGAGGTCGTGGAGCATCCCGAGATGACAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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| CDS GCA 72 bp | AAATTCGTGTCATCTCGGGATGCTCCACGACCTCCGTaGGAATGGCGAGGGCGCCGAGCCTCTGTTCTAACT | + |
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Preference number: 6 (lower is better) Translates to: KFVSSRDAPRPP*EWRGRRASVLT Trigger: AGTTAGAACAGAGGCTCGGCGCCCTCGCCATTCGCACGGAGGTCGTGGAGCATCCCGAGATGACACGAATTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133103.2 |
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