Pregenerated sensors for PROL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064156Ensembl transcript IDs: ENSMUST00000170832.3
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGTCGGTGCTGGTGTGGTTGTATTTGTGGTAGGTTTTGTGGTCGGTaGTGGTGTGGTTGCATTTGTGGTAGTTCTGTTGTTTGGTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: GRCWCGCICGRFCGR*WCGCICGSSVVWCW Trigger: CCAGCACCAAACAACAGAACTACCACAAATGCAACCACACCAGCACCGACCACAAAACCTACCACAAATACAACCACACCAGCACCGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 90 bp | TGCATTTGTGGTTGTTGCTGGTGTGGTTACATTTGTGGTTGTTGCTaGTGTGGTTACATTTGTGGTAGATTTGGTGGTCGGTGCTGGTGT | + |
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Preference number: 5 (lower is better) Translates to: CICGCCWCGYICGCC*CGYICGRFGGRCWC Trigger: ACACCAGCACCGACCACCAAATCTACCACAAATGTAACCACACCAGCAACAACCACAAATGTAACCACACCAGCAACAACCACAAATGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS GCA 90 bp | TGTGGTTGTATTTGTGGTAGGTTTTGTGGTCGGTGCTGGTGTGGTTaGATTTGTGGTAGTTCTGTTGTTTGGTGCTGGTATGGTTGCATT | + |
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Preference number: 5 (lower is better) Translates to: CGCICGRFCGRCWCG*ICGSSVVWCWYGCI Trigger: AATGCAACCATACCAGCACCAAACAACAGAACTACCACAAATGCAACCACACCAGCACCGACCACAAAACCTACCACAAATACAACCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS TCA 90 bp | AGACTTAGTTGTTGTAGGTATGGCTGTAGAGGTGCTAGGCTTAGGTaGAGTAGTAGGTTCTTTTGTTGTAGATTTGGTGGTTGTTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: RLSCCRYGCRGARLR*SSRFFCCRFGGCCW Trigger: CCAGCAACAACCACCAAATCTACAACAAAAGAACCTACTACTTCACCTAAGCCTAGCACCTCTACAGCCATACCTACAACAACTAAGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS TCA 90 bp | GTGGTCTTGGATATCTTGGATATCTTGGGTCTTCTAGATATTTTCTaGCAGGGAATTGTGAACTTCTTGACTTGTGATGACTTTCACCAG | + |
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Preference number: 5 (lower is better) Translates to: VVLDILDILGLLDIF*QGIVNFLTCDDFHQ Trigger: CTGGTGAAAGTCATCACAAGTCAAGAAGTTCACAATTCCCTGTCAGAAAATATCTAGAAGACCCAAGATATCCAAGATATCCAAGACCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS GCA 90 bp | TGTAGTTGCATTTGTGGTAGGTTTGGTGGTAGGTGCTGGTGTGGTTaGATTTGGTTTCGTTTTATCAGAGATAATCTGTCTTTTAGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: CSCICGRFGGRCWCG*IWFRFIRDNLSFRN Trigger: ATTCCTAAAAGACAGATTATCTCTGATAAAACGAAACCAAATGCAACCACACCAGCACCTACCACCAAACCTACCACAAATGCAACTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 90 bp | TCCTGGAGGGCACATCTTATACCATTGATTGTCTTTTGGAAACTTTaGAGAGCTTGGAATGAAACCATAGGAATAATGTGGTCTTGGATA | + |
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Preference number: 5 (lower is better) Translates to: SWRAHLIPLIVFWKL*RAWNETIGIMWSWI Trigger: TATCCAAGACCACATTATTCCTATGGTTTCATTCCAAGCTCTCCAAAGTTTCCAAAAGACAATCAATGGTATAAGATGTGCCCTCCAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 90 bp | GCACATCTTATACCATTGATTGTCTTTTGGAAACTTTGGAGAGCTTaGAATGAAACCATAGGAATAATGTGGTCTTGGATATCTTGGATA | + |
|
Preference number: 5 (lower is better) Translates to: AHLIPLIVFWKLWRA*NETIGIMWSWISWI Trigger: TATCCAAGATATCCAAGACCACATTATTCCTATGGTTTCATTCCAAGCTCTCCAAAGTTTCCAAAAGACAATCAATGGTATAAGATGTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 72 bp | TGTGGTTGCATTTGTGGTAGTTCTGTTGGTTGGTGCTaGTGTGGTTGCATTTGTGGTAGGTTTGGGGGTCGG | + |
|
Preference number: 6 (lower is better) Translates to: CGCICGSSVGWC*CGCICGRFGGR Trigger: CCGACCCCCAAACCTACCACAAATGCAACCACACCAGCACCAACCAACAGAACTACCACAAATGCAACCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS GCA 72 bp | ATTTGTGGTAGGTTTGAGGGTCGGTGCTGGTGTGGTTaGATTTGTGGTAGTTCTGTTGGTTGGTGCTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: ICGRFEGRCWCG*ICGSSVGWCWC Trigger: ACACCAGCACCAACCAACAGAACTACCACAAATGCAACCACACCAGCACCGACCCTCAAACCTACCACAAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 72 bp | TATGGTTGCATTTGTGGTAGGTTTGAGGGTCGGTGCTaGTGTGGTTGCATTTGTGGTAGTTCTGTTGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: YGCICGRFEGRC*CGCICGSSVGW Trigger: CCAACCAACAGAACTACCACAAATGCAACCACACCAGCACCGACCCTCAAACCTACCACAAATGCAACCATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 72 bp | TGTGGTTGCATTTGTGGTAGTTCTGTTGTTTGGTGCTaGTATGGTTGCATTTGTGGTAGGTTTGAGGGTCGG | + |
|
Preference number: 6 (lower is better) Translates to: CGCICGSSVVWC*YGCICGRFEGR Trigger: CCGACCCTCAAACCTACCACAAATGCAACCATACCAGCACCAAACAACAGAACTACCACAAATGCAACCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CAA 90 bp | GAGGTGCTAGGCTTAGGTGAAGTAGTAGGTTCTTTTGTTGTAGATTaGGTGGTTGTTGCTGGTGTGGTTGCATTTGTGGTTGTTGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: EVLGLGEVVGSFVVD*VVVAGVVAFVVVAG Trigger: ACCAGCAACAACCACAAATGCAACCACACCAGCAACAACCACCAAATCTACAACAAAAGAACCTACTACTTCACCTAAGCCTAGCACCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS GCA 72 bp | ATTTGTGGTAGGTTTTGTGGTCGGTGCTGGTGTGGTTaGATTTGTGGTAGTTCTGTTGTTTGGTGCTGGTAT | + |
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Preference number: 6 (lower is better) Translates to: ICGRFCGRCWCG*ICGSSVVWCWY Trigger: ATACCAGCACCAAACAACAGAACTACCACAAATGCAACCACACCAGCACCGACCACAAAACCTACCACAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 72 bp | TGTGGTTGTATTTGTGGTAGGTTTTGTGGTCGGTGCTaGTGTGGTTGCATTTGTGGTAGTTCTGTTGTTTGG | + |
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Preference number: 6 (lower is better) Translates to: CGCICGRFCGRC*CGCICGSSVVW Trigger: CCAAACAACAGAACTACCACAAATGCAACCACACCAGCACCGACCACAAAACCTACCACAAATACAACCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS TCA 72 bp | TGTTGTAGGTATGGCTGTAGAGGTGCTAGGCTTAGGTaGAGTAGTAGGTTCTTTTGTTGTAGATTTGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: CCRYGCRGARLR*SSRFFCCRFGG Trigger: ACCACCAAATCTACAACAAAAGAACCTACTACTTCACCTAAGCCTAGCACCTCTACAGCCATACCTACAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 72 bp | TCCTGGAGGGCACATCTTATACCATTGATTGTCTTTTaGAAACTTTGGAGAGCTTGGAATGAAACCATAGGA | + |
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Preference number: 6 (lower is better) Translates to: SWRAHLIPLIVF*KLWRAWNETIG Trigger: TCCTATGGTTTCATTCCAAGCTCTCCAAAGTTTCCAAAAGACAATCAATGGTATAAGATGTGCCCTCCAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS TCA 72 bp | ATTAAGGTAGTTCCTGGAGGGCACATCTTATACCATTaGTTGTCTTTTGGAAACTTTGGAGAGCTTGGAATG | + |
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Preference number: 6 (lower is better) Translates to: IKVVPGGHILYH*LSFGNFGELGM Trigger: CATTCCAAGCTCTCCAAAGTTTCCAAAAGACAATCAATGGTATAAGATGTGCCCTCCAGGAACTACCTTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS GCA 72 bp | GATGGTAGTACTAGTTGTAGTAGAGGAAGTACTATTTaGAGACTTAGTTGTTGTAGGTATGGCTGTAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: DGSTSCSRGSTI*RLSCCRYGCRG Trigger: ACCTCTACAGCCATACCTACAACAACTAAGTCTGCAAATAGTACTTCCTCTACTACAACTAGTACTACCATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 72 bp | GCACATCTTATACCATTGATTGTCTTTTGGAAACTTTaGAGAGCTTGGAATGAAACCATAGGAATAATGTGG | + |
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Preference number: 6 (lower is better) Translates to: AHLIPLIVFWKL*RAWNETIGIMW Trigger: CCACATTATTCCTATGGTTTCATTCCAAGCTCTCCAAAGTTTCCAAAAGACAATCAATGGTATAAGATGTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS TCA 72 bp | ATTGATTGTCTTTTGGAAACTTTGGAGAGCTTGGAATaGAACCATAGGAATAATGTGGTCTTGGATATCTTG | + |
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Preference number: 6 (lower is better) Translates to: IDCLLETLESLE*NHRNNVVLDIL Trigger: CAAGATATCCAAGACCACATTATTCCTATGGTTTCATTCCAAGCTCTCCAAAGTTTCCAAAAGACAATCAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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| CDS CCA 72 bp | ATACCATTGATTGTCTTTTGGAAACTTTGGAGAGCTTaGAATGAAACCATAGGAATAATGTGGTCTTGGATA | + |
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Preference number: 6 (lower is better) Translates to: IPLIVFWKLWRA*NETIGIMWSWI Trigger: TATCCAAGACCACATTATTCCTATGGTTTCATTCCAAGCTCTCCAAAGTTTCCAAAAGACAATCAATGGTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170832.3 |
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