Pregenerated sensors for PROK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030069Ensembl transcript IDs: ENSMUST00000008273.8, ENSMUST00000032152.14, ENSMUST00000101120.11, ENSMUST00000203738.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCTCCCACCAGTTAAACAGCAGAACTGAAAGCCAGTGGGCCAGATaGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGTCTGCCCCAAA | + |
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Preference number: 1 (lower is better) Translates to: SSHQLNSRTESQWAR*VQESSWSAPNVCPK Trigger: TTTGGGGCAGACGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR TCA 90 bp | CAGGGTCCCGTTAATTTTGTCCTCCCACCAGTTAAACAGCAGAACTaGAAGCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGC | + |
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Preference number: 1 (lower is better) Translates to: QGPVNFVLPPVKQQN*KPVGQMGAGKFLER Trigger: GCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGACAAAATTAACGGGACCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR CCA 90 bp | AGGTTATCTTTAATGTCAGGAGAGCAATGGTCTAGAAATGACCACTaGAGTGGAAGGGGAGAGAAGAAAGAAATAGGTGCATCCCCACTG | + |
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Preference number: 1 (lower is better) Translates to: RLSLMSGEQWSRNDH*SGRGEKKEIGASPL Trigger: CAGTGGGGATGCACCTATTTCTTTCTTCTCTCCCCTTCCACTCCAGTGGTCATTTCTAGACCATTGCTCTCCTGACATTAAAGATAACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203738.2 |
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| 3UTR CCA 90 bp | AGAAATCATGTTGGTGTAAGGTTATCTTTAATGTCAGGAGAGCAATaGTCTAGAAATGACCACTGGAGTGGAAGGGGAGAGAAGAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: RNHVGVRLSLMSGEQ*SRNDHWSGRGEKKE Trigger: TTCTTTCTTCTCTCCCCTTCCACTCCAGTGGTCATTTCTAGACCATTGCTCTCCTGACATTAAAGATAACCTTACACCAACATGATTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203738.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGTCTGCGTGTCTGTCTGCGCATaGGCAGGGCGGGGCGGGGCG | + |
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Preference number: 2 (lower is better) Translates to: SQWARWVQESSWSAPNVCVSVCA*AGRGGA Trigger: CGCCCCGCCCCGCCCTGCCCATGCGCAGACAGACAC...GCAGACGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR TCA 90 bp | CTGAAAGCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGACAGTGCTAGCTCTCTaGGCCTCCTCAGTGGGTCCA | + |
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Preference number: 2 (lower is better) Translates to: LKASGPDGCRKVPGALPTTVLAL*ASSVGP Trigger: TGGACCCACTGAGGAGGCTCAGAGAGCTAGCACTGT...CGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCTTTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR GCA 90 bp | CTGAAAGCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGTGTAGAAACCCACAATaGTACAGTAAGGTGAGGATC | + |
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Preference number: 2 (lower is better) Translates to: LKASGPDGCRKVPGALPTCRNPQ*YSKVRI Trigger: GATCCTCACCTTACTGTAGCATTGTGGGTTTCTACA...CGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCTTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR GCA 90 bp | CTGAAAGCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGGCAAAAGGAAGTTTCTaGAACAGATTGTTCCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: LKASGPDGCRKVPGALPTAKGSF*NRLFPL Trigger: AAGAGGGAACAATCTGTTGCAGAAACTTCCTTTTGC...CGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCTTTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR TCA 90 bp | GGATCATCAGAGTCTTTGAAGAGTAAGGGTGTGTCTGTCTGCGCATGGGCAGGGTGCCACAATTACAAGTaGGACTCGACGGACATTGTG | + |
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Preference number: 2 (lower is better) Translates to: GSSESLKSKGVSVCAWAGCHNYK*DSTDIV Trigger: CACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCA...CCCTGCCCATGCGCAGACAGACACACCCTTACTCTTCAAAGACTCTGATGATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CCA 90 bp | TTAATTTTGTCCTCCCACCAGTTAAACAGCAGAACTGAAAGCCAGTGGGCCAGAGTGCAGGAAAGTTCCTaGAGCGCTCCCAACGTCTGC | + |
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Preference number: 2 (lower is better) Translates to: LILSSHQLNSRTESQWARVQESS*SAPNVC Trigger: GCAGACGTTGGGAGCGCTCCAGGAACTTTCCTGCAC...TCTGGCCCACTGGCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGACAAAATTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CCA 90 bp | TCTCTGAGCCTCCTCAGTGGGTCCACCAGCAAGGCGGGGAAGTGTAGAAACCCAGAGAACATTTCTTTCTaGAGTATTCTTTGTTTGCCA | + |
|
Preference number: 2 (lower is better) Translates to: SLSLLSGSTSKAGKCRNPENISF*SILCLP Trigger: TGGCAAACAAAGAATACTCCAGAAAGAAATGTTCTC...TGGGTTTCTACACTTCCCCGCCTTGCTGGTGGACCCACTGAGGAGGCTCAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR GCA 90 bp | TCCCAACGTCTGCCCCAAATGAGCTGCTTGGGGGATCTGGTTCAAACCTGTACAGCAAAAGGAAGTTTCTaGAACAGATTGTTCCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: SQRLPQMSCLGDLVQTCTAKGSF*NRLFPL Trigger: AAGAGGGAACAATCTGTTGCAGAAACTTCCTTTTGC...TGTACAGGTTTGAACCAGATCCCCCAAGCAGCTCATTTGGGGCAGACGTTGGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR TCA 90 bp | TTAATTTTGTCCTCCCACCAGTTAAACAGCAGAACTGAAAGCCAGTGGGCCAGAGATCATCAGAGTCTTTaGAGAGTAAGGGTGTGTCTG | + |
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Preference number: 2 (lower is better) Translates to: LILSSHQLNSRTESQWARDHQSL*RVRVCL Trigger: CAGACACACCCTTACTCTTCAAAGACTCTGATGATC...TCTGGCCCACTGGCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGACAAAATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR GCA 90 bp | CATAAACAGGGAAATGAGAAGCCATGTCAGAAAGTCCTCTATAAATCTCTCCAAACTCGACGGACATTGTaGAGCGGAGGGTCGCATTTC | + |
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Preference number: 2 (lower is better) Translates to: HKQGNEKPCQKVLYKSLQTRRTL*SGGSHF Trigger: GAAATGCGACCCTCCGCTGCACAATGTCCGTCGAGT...TTGGAGAGATTTATAGAGGACTTTCTGACATGGCTTCTCATTTCCCTGTTTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR GCA 90 bp | ACAAAATCCACAAAGATGACTGATTCCTGCTCCATCAGCTGGTTGAGCATAGAGGAAGAAAGAAATAGGTaGATCCCCACTGTACCGTCC | + |
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Preference number: 2 (lower is better) Translates to: TKSTKMTDSCSISWLSIEEERNR*IPTVPS Trigger: GGACGGTACAGTGGGGATGCACCTATTTCTTTCTTC...CTCTATGCTCAACCAGCTGATGGAGCAGGAATCAGTCATCTTTGTGGATTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203738.2 |
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| 3UTR-3UTR GCA 90 bp | AACAGGGAAATGAGAAGCCATGTCAGAAAGTCCTCTATAAATCTCTCCAAAAATACTCGACGGACATTGTaGAGCGGAGGGTCGCATTTC | + |
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Preference number: 2 (lower is better) Translates to: NREMRSHVRKSSINLSKNTRRTL*SGGSHF Trigger: GAAATGCGACCCTCCGCTGCACAATGTCCGTCGAGT...ATTTTTGGAGAGATTTATAGAGGACTTTCTGACATGGCTTCTCATTTCCCTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR TCA 90 bp | AACAGGGAAATGAGAAGCCATGTCAGAAAGTCCTCTATAAATCTCTCCAAAAATTGCCACAATTACAAGTaGGACTCGACGGACATTGTG | + |
|
Preference number: 2 (lower is better) Translates to: NREMRSHVRKSSINLSKNCHNYK*DSTDIV Trigger: CACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCA...ATTTTTGGAGAGATTTATAGAGGACTTTCTGACATGGCTTCTCATTTCCCTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR TCA 90 bp | AAGGCAAAACATAAACAGGGAAATGAGAAGCCATGTCAGAAAGTCCTCTATAAATGCCACAATTACAAGTaGGACTCGACGGACATTGTG | + |
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Preference number: 2 (lower is better) Translates to: KAKHKQGNEKPCQKVLYKCHNYK*DSTDIV Trigger: CACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCA...TTTATAGAGGACTTTCTGACATGGCTTCTCATTTCCCTGTTTATGTTTTGCCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CCA 90 bp | TGCTTCCTCGAGTGGCGTTCTTTAAAATGTCTCCAACAAGAAGACTTAAAGAAAGATAGAAACGTTACTTaGAAAGTCAAGGAAGGGGGA | + |
|
Preference number: 2 (lower is better) Translates to: CFLEWRSLKCLQQEDLKKDRNVT*KVKEGG Trigger: TCCCCCTTCCTTGACTTTCCAAGTAACGTTTCTATC...TTTCTTTAAGTCTTCTTGTTGGAGACATTTTAAAGAACGCCACTCGAGGAAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CCA 90 bp | AACAGGGAAATGAGAAGCCATGTCAGAAAGTCCTCTATAAATCTCTCCAAAAATGAGAACATTTCTTTCTaGAGTATTCTTTGTTTGCCA | + |
|
Preference number: 2 (lower is better) Translates to: NREMRSHVRKSSINLSKNENISF*SILCLP Trigger: TGGCAAACAAAGAATACTCCAGAAAGAAATGTTCTC...ATTTTTGGAGAGATTTATAGAGGACTTTCTGACATGGCTTCTCATTTCCCTGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CCA 90 bp | AGAAGCCATGTCAGAAAGTCCTCTATAAATCTCTCCAAAAATCAAAACTTTCCTGAGAACATTTCTTTCTaGAGTATTCTTTGTTTGCCA | + |
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Preference number: 2 (lower is better) Translates to: RSHVRKSSINLSKNQNFPENISF*SILCLP Trigger: TGGCAAACAAAGAATACTCCAGAAAGAAATGTTCTC...AGGAAAGTTTTGATTTTTGGAGAGATTTATAGAGGACTTTCTGACATGGCTTCT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR GCA 72 bp | TTCCTGGAGCGCTCCCAACGTCTGCCCCAAATGAGCTaGTTGGGGGATCTGGTTCAAACCTGTACAGTGCTA | + |
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Preference number: 3 (lower is better) Translates to: FLERSQRLPQMS*LGDLVQTCTVL Trigger: TAGCACTGTACAGGTTTGAACCAGATCCCCCAAGCAGCTCATTTGGGGCAGACGTTGGGAGCGCTCCAGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR CCA 72 bp | TCCTCCCACCAGTTAAACAGCAGAACTGAAAGCCAGTaGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCT | + |
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Preference number: 3 (lower is better) Translates to: SSHQLNSRTESQ*ARWVQESSWSA Trigger: AGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CAA 90 bp | GAAAGCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGTCTGGAGTATTCTTTGTTaGCCACAATTACAAGTGAGA | + |
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Preference number: 3 (lower is better) Translates to: ESQWARWVQESSWSAPNVWSILC*PQLQVR Trigger: TCTCACTTGTAATTGTGGCAAACAAAGAATACTCCA...GACGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR TCA 72 bp | CTTTCTGGAGTATTCTTTGTTTGCCACAATTACAAGTaGGACTCGACGGACATTGTGCAGCGGAGGGTCGCA | + |
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Preference number: 3 (lower is better) Translates to: LSGVFFVCHNYK*DSTDIVQRRVA Trigger: TGCGACCCTCCGCTGCACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCAAACAAAGAATACTCCAGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR TCA 72 bp | GTTAATTTTGTCCTCCCACCAGTTAAACAGCAGAACTaGAAGCCAGTGGGCCAGATGGGTGCAGGAAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: VNFVLPPVKQQN*KPVGQMGAGKF Trigger: GAACTTTCCTGCACCCATCTGGCCCACTGGCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGACAAAATTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR GCA 72 bp | TTTGCCACAATTACAAGTGAGACTCGACGGACATTGTaGAGCGGAGGGTCGCATTTCAAGTTCCTACTTCAG | + |
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Preference number: 3 (lower is better) Translates to: FATITSETRRTL*SGGSHFKFLLQ Trigger: CTGAAGTAGGAACTTGAAATGCGACCCTCCGCTGCACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR GCA 72 bp | TCCACCAGCAAGGCGGGGAAGTGTAGAAACCCACAATaGTACAGTAAGGTGAGGATCATCAGAGTCTTTGAA | + |
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Preference number: 3 (lower is better) Translates to: STSKAGKCRNPQ*YSKVRIIRVFE Trigger: TTCAAAGACTCTGATGATCCTCACCTTACTGTAGCATTGTGGGTTTCTACACTTCCCCGCCTTGCTGGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR TCA 72 bp | CGGGGAAGTGTAGAAACCCACAATGCTACAGTAAGGTaGGGATCATCAGAGTCTTTGAAGAGTAAGGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: RGSVETHNATVR*GSSESLKSKGV Trigger: CACACCCTTACTCTTCAAAGACTCTGATGATCCTCACCTTACTGTAGCATTGTGGGTTTCTACACTTCCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CAA 90 bp | TTAATTTTGTCCTCCCACCAGTTAAACAGCAGAACTGAAAGCCAGTGGGCCAGAGGATCATCAGAGTCTTaGAAGAGTAAGGGTGTGTCT | + |
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Preference number: 3 (lower is better) Translates to: LILSSHQLNSRTESQWARGSSES*KSKGVS Trigger: AGACACACCCTTACTCTTCAAAGACTCTGATGATCC...TCTGGCCCACTGGCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGACAAAATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CAA 90 bp | TTCAGGGTCCCGTTAATTTTGTCCTCCCACCAGTTAAACAGCAGAACTGAAAGCGGATCATCAGAGTCTTaGAAGAGTAAGGGTGTGTCT | + |
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Preference number: 3 (lower is better) Translates to: FRVPLILSSHQLNSRTESGSSES*KSKGVS Trigger: AGACACACCCTTACTCTTCAAAGACTCTGATGATCC...GCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGACAAAATTAACGGGACCCTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CAA 90 bp | TTAATTTTGTCCTCCCACCAGTTAAACAGCAGAACTGAAAGCCAGTGGGCCAGAAGTTTCTGCAACAGATaGTTCCCTCTTATTCTCCTA | + |
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Preference number: 3 (lower is better) Translates to: LILSSHQLNSRTESQWARSFCNR*FPLILL Trigger: TAGGAGAATAAGAGGGAACAATCTGTTGCAGAAACT...TCTGGCCCACTGGCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGACAAAATTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR-3UTR CAA 90 bp | CATAAACAGGGAAATGAGAAGCCATGTCAGAAAGTCCTCTATAAATCTCTCCAATGGAGTATTCTTTGTTaGCCACAATTACAAGTGAGA | + |
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Preference number: 3 (lower is better) Translates to: HKQGNEKPCQKVLYKSLQWSILC*PQLQVR Trigger: TCTCACTTGTAATTGTGGCAAACAAAGAATACTCCA...TTGGAGAGATTTATAGAGGACTTTCTGACATGGCTTCTCATTTCCCTGTTTATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR CCA 90 bp | CTGAAAGCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGAGGCAGGGGCAGGTGTaGTGCATCCTCCGCCCCCAA | + |
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Preference number: 4 (lower is better) Translates to: LKASGPDGCRKVPGALPTRQGQV*CILRPQ Trigger: TTGGGGGCGGAGGATGCACCACACCTGCCCCTGCCT...CGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCTTTCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR TCA 90 bp | GCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGTCTGCCCTTCCATTTGCAACATaGCTTTTCCGAGTCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: ASGPDGCRKVPGALPTSALPFAT*LFRVRG Trigger: CCCCCTGACTCGGAAAAGTCATGTTGCAAATGGAAG...GGCAGACGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032152.14 |
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| CDS-3UTR CCA 90 bp | GGGGGATCTGGTTCAAACCTGTACAGTGCTAGCTCTCTGAGCCTCCTCAGTGGGCAGCTGTCGCCCACTTaGCCCATAGGTGTGCAGATC | + |
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Preference number: 4 (lower is better) Translates to: GGSGSNLYSASSLSLLSGQLSPT*PIGVQI Trigger: GATCTGCACACCTATGGGCCAAGTGGGCGACAGCTG...CCCACTGAGGAGGCTCAGAGAGCTAGCACTGTACAGGTTTGAACCAGATCCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR TCA 90 bp | GGATCATCAGAGTCTTTGAAGAGTAAGGGTGTGTCTGTCTGCGCATGGGCAGGGATGCCTCCTCCGCACTaGGAGTCCTTGTCGCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: GSSESLKSKGVSVCAWAGMPPPH*ESLSQA Trigger: GGCTTGCGACAAGGACTCTCAGTGCGGAGGAGGCAT...CCCTGCCCATGCGCAGACAGACACACCCTTACTCTTCAAAGACTCTGATGATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR CCA 90 bp | TCCCAACGTCTGCCCCAAATGAGCTGCTTGGGGGATCTGGTTCAAACCTGTACACAGCTGTCGCCCACTTaGCCCATAGGTGTGCAGATC | + |
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Preference number: 4 (lower is better) Translates to: SQRLPQMSCLGDLVQTCTQLSPT*PIGVQI Trigger: GATCTGCACACCTATGGGCCAAGTGGGCGACAGCTG...TGTACAGGTTTGAACCAGATCCCCCAAGCAGCTCATTTGGGGCAGACGTTGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR CCA 90 bp | AGTATTCTTTGTTTGCCACAATTACAAGTGAGACTCGACGGACATTGTGCAGCGAGGCAGGGGCAGGTGTaGTGCATCCTCCGCCCCCAA | + |
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Preference number: 4 (lower is better) Translates to: SILCLPQLQVRLDGHCAARQGQV*CILRPQ Trigger: TTGGGGGCGGAGGATGCACCACACCTGCCCCTGCCT...CGCTGCACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCAAACAAAGAATACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR CCA 90 bp | TTCTGGAGTATTCTTTGTTTGCCACAATTACAAGTGAGACTCGACGGACATTGTAGGCAGGGGCAGGTGTaGTGCATCCTCCGCCCCCAA | + |
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Preference number: 4 (lower is better) Translates to: FWSILCLPQLQVRLDGHCRQGQV*CILRPQ Trigger: TTGGGGGCGGAGGATGCACCACACCTGCCCCTGCCT...ACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCAAACAAAGAATACTCCAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR TCA 90 bp | TTCTGGAGTATTCTTTGTTTGCCACAATTACAAGTGAGACTCGACGGACATTGTATGCCTCCTCCGCACTaGGAGTCCTTGTCGCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: FWSILCLPQLQVRLDGHCMPPPH*ESLSQA Trigger: GGCTTGCGACAAGGACTCTCAGTGCGGAGGAGGCAT...ACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCAAACAAAGAATACTCCAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| 3UTR CAA 72 bp | ATAAACGGGCCAGGTTCCTTCAGGGTCCCGTTAATTTaGTCCTCCCACCAGTTAAACAGCAGAACTGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: INGPGSFRVPLI*SSHQLNSRTES Trigger: GCTTTCAGTTCTGCTGTTTAACTGGTGGGAGGACAAAATTAACGGGACCCTGAAGGAACCTGGCCCGTTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR CCA 90 bp | TGCTTCCTCGAGTGGCGTTCTTTAAAATGTCTCCAACAAGAAGACTTAAAGAAACCTCCGCCCCCAAAATaGAACTTTCCGAGTCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: CFLEWRSLKCLQQEDLKKPPPPK*NFPSQG Trigger: CCCCTGACTCGGAAAGTTCCATTTTGGGGGCGGAGG...TTTCTTTAAGTCTTCTTGTTGGAGACATTTTAAAGAACGCCACTCGAGGAAGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000101120.11 |
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| 3UTR CAA 72 bp | TTGTTTGCCACAATTACAAGTGAGACTCGACGGACATaGTGCAGCGGAGGGTCGCATTTCAAGTTCCTACTT | + |
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Preference number: 4 (lower is better) Translates to: LFATITSETRRT*CSGGSHFKFLL Trigger: AAGTAGGAACTTGAAATGCGACCCTCCGCTGCACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCAAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000008273.8 ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR TCA 90 bp | CATGTTCCAGTAAAATATCTACTTTGTCCACAGGTTAGAAATCATGTTGGTGTAATGCCTCCTCCGCACTaGGAGTCCTTGTCGCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: HVPVKYLLCPQVRNHVGVMPPPH*ESLSQA Trigger: GGCTTGCGACAAGGACTCTCAGTGCGGAGGAGGCAT...TACACCAACATGATTTCTAACCTGTGGACAAAGTAGATATTTTACTGGAACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203738.2 |
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| CDS-3UTR CCA 90 bp | AAGCCACTTCAAAAATCAAAGATAGAAACGTTACTTGGAAAGTCAAGGAAGGGGCCTCCGCCCCCAAAATaGAACCTCCTTCTTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: KPLQKSKIETLLGKSRKGPPPPK*NLLLPL Trigger: AAGAGGAAGAAGGAGGTTCCATTTTGGGGGCGGAGG...CCCCTTCCTTGACTTTCCAAGTAACGTTTCTATCTTTGATTTTTGAAGTGGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000032152.14 |
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| CDS-3UTR GCA 90 bp | AGTATTCTTTGTTTGCCACAATTACAAGTGAGACTCGACGGACATTGTGCAGCGTTCCTGCCTTCCATTTaGAACATGACTTTTCCGAGT | + |
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Preference number: 4 (lower is better) Translates to: SILCLPQLQVRLDGHCAAFLPSI*NMTFPS Trigger: ACTCGGAAAAGTCATGTTGCAAATGGAAGGCAGGAA...CGCTGCACAATGTCCGTCGAGTCTCACTTGTAATTGTGGCAAACAAAGAATACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032152.14 |
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| CDS-3UTR CAA 90 bp | GCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGTCTGCCGCAGCTGTCGCCCACTaGGCCCATAGGTGTGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: ASGPDGCRKVPGALPTSAAAVAH*AHRCAD Trigger: ATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGC...GGCAGACGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS-3UTR CAA 90 bp | GCCACAATTACAAGTGAGACTCGACGGACATTGTGCAGCGGAGGGTCGCATTTCGCAGCTGTCGCCCACTaGGCCCATAGGTGTGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: ATITSETRRTLCSGGSHFAAVAH*AHRCAD Trigger: ATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGC...GAAATGCGACCCTCCGCTGCACAATGTCCGTCGAGTCTCACTTGTAATTGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032152.14 ENSMUST00000101120.11 |
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| CDS CCA 90 bp | CAGACACTAACTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCACTTaGCCCATAGGTGTGCAGATCCTTATGCTCTTAACCCAGATACTG | + |
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Preference number: 5 (lower is better) Translates to: QTLTFRVRGWQLSPT*PIGVQILMLLTQIL Trigger: CAGTATCTGGGTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAGTTAGTGTCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203738.2 |
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| CDS-3UTR CAA 90 bp | GAAAGCCAGTGGGCCAGATGGGTGCAGGAAAGTTCCTGGAGCGCTCCCAACGTCTTTCCTGCCTTCCATTaGCAACATGACTTTTCCGAG | + |
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Preference number: 5 (lower is better) Translates to: ESQWARWVQESSWSAPNVFPAFH*QHDFSE Trigger: CTCGGAAAAGTCATGTTGCAAATGGAAGGCAGGAAA...GACGTTGGGAGCGCTCCAGGAACTTTCCTGCACCCATCTGGCCCACTGGCTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032152.14 |
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| CDS GCA 90 bp | CTTCCTCTTTCTTCTCTTCGCCCTTCTTCTTTCCTGCCTTCCATTTaGAACATGACTTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCAC | + |
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Preference number: 5 (lower is better) Translates to: LPLSSLRPSSFLPSI*NMTFPSQGVAAVAH Trigger: GTGGGCGACAGCTGCCACCCCCTGACTCGGAAAAGTCATGTTGCAAATGGAAGGCAGGAAAGAAGAAGGGCGAAGAGAAGAAAGAGGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032152.14 |
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| CDS CCA 90 bp | CAAAATGGAACTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCACTTaGCCCATAGGTGTGCAGATCCTTATGCTCTTAACCCAGATACTG | + |
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Preference number: 5 (lower is better) Translates to: QNGTFRVRGWQLSPT*PIGVQILMLLTQIL Trigger: CAGTATCTGGGTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAGTTCCATTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101120.11 |
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| CDS-3UTR CAA 90 bp | CAGGTTAGAAATCATGTTGGTGTAAGGTTATCTTTAATGTCAGGAGAGCAATGGGCAGCTGTCGCCCACTaGGCCCATAGGTGTGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: QVRNHVGVRLSLMSGEQWAAVAH*AHRCAD Trigger: ATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGC...CCATTGCTCTCCTGACATTAAAGATAACCTTACACCAACATGATTTCTAACCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203738.2 |
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| CDS CCA 72 bp | ATCCCCGTGCAGACACTAACTTTCCGAGTCAGGGGGTaGCAGCTGTCGCCCACTTGGCCCATAGGTGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: IPVQTLTFRVRG*QLSPTWPIGVQ Trigger: CTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAGTTAGTGTCTGCACGGGGAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000203738.2 |
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| CDS CCA 72 bp | CTTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCACTTaGCCCATAGGTGTGCAGATCCTTATGCTCTTAACC | + |
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Preference number: 6 (lower is better) Translates to: LFRVRGWQLSPT*PIGVQILMLLT Trigger: GGTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032152.14 |
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| CDS CCA 72 bp | ACTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCACTTaGCCCATAGGTGTGCAGATCCTTATGCTCTTAACC | + |
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Preference number: 6 (lower is better) Translates to: TFRVRGWQLSPT*PIGVQILMLLT Trigger: GGTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000101120.11 ENSMUST00000203738.2 |
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| CDS CAA 72 bp | ACTTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCACTaGGCCCATAGGTGTGCAGATCCTTATGCTCTTAAC | + |
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Preference number: 6 (lower is better) Translates to: TFPSQGVAAVAH*AHRCADPYALN Trigger: GTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032152.14 |
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| CDS CAA 72 bp | AACTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCACTaGGCCCATAGGTGTGCAGATCCTTATGCTCTTAAC | + |
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Preference number: 6 (lower is better) Translates to: NFPSQGVAAVAH*AHRCADPYALN Trigger: GTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000101120.11 ENSMUST00000203738.2 |
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| CDS CAA 90 bp | GCAGACACTAACTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCACTaGGCCCATAGGTGTGCAGATCCTTATGCTCTTAACCCAGATACT | + |
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Preference number: 6 (lower is better) Translates to: ADTNFPSQGVAAVAH*AHRCADPYALNPDT Trigger: AGTATCTGGGTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAGTTAGTGTCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203738.2 |
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| CDS CAA 90 bp | TGCAACATGACTTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCACTaGGCCCATAGGTGTGCAGATCCTTATGCTCTTAACCCAGATACT | + |
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Preference number: 6 (lower is better) Translates to: CNMTFPSQGVAAVAH*AHRCADPYALNPDT Trigger: AGTATCTGGGTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAAGTCATGTTGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032152.14 |
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| CDS CAA 90 bp | CCAAAATGGAACTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCACTaGGCCCATAGGTGTGCAGATCCTTATGCTCTTAACCCAGATACT | + |
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Preference number: 6 (lower is better) Translates to: PKWNFPSQGVAAVAH*AHRCADPYALNPDT Trigger: AGTATCTGGGTTAAGAGCATAAGGATCTGCACACCTATGGGCCAAGTGGGCGACAGCTGCCACCCCCTGACTCGGAAAGTTCCATTTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101120.11 |
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| CDS CAA 90 bp | TCTTCCTCTTTCTTCTCTTCGCCCTTCTTCTTTCCTGCCTTCCATTaGCAACATGACTTTTCCGAGTCAGGGGGTGGCAGCTGTCGCCCA | + |
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Preference number: 6 (lower is better) Translates to: SSSFFSSPFFFPAFH*QHDFSESGGGSCRP Trigger: TGGGCGACAGCTGCCACCCCCTGACTCGGAAAAGTCATGTTGCAAATGGAAGGCAGGAAAGAAGAAGGGCGAAGAGAAGAAAGAGGAAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032152.14 |
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