Pregenerated sensors for PROK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070368Ensembl transcript IDs: ENSMUST00000049852.10, ENSMUST00000197758.5
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAAGCGTTGGTCCCCACACAGCCTCTGCTCTGGCCTCTGGCCTTCTaGGGTCCCCACACAGCCTCTGTTCTGGCCTCTGGCCTTCTGGGT | + |
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Preference number: 1 (lower is better) Translates to: EALVPTQPLLWPLAF*GPHTASVLASGLLG Trigger: ACCCAGAAGGCCAGAGGCCAGAACAGAGGCTGTGTGGGGACCCCAGAAGGCCAGAGGCCAGAGCAGAGGCTGTGTGGGGACCAACGCTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR TCA 90 bp | CCTGTGCTGTCCAATGCCCAGGCTAGTGGGCCCTGGATTAAGGACTaGGCAAAGACCGGTAGAGGGCAGGAACCCAGGGCCTCGGAAACC | + |
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Preference number: 1 (lower is better) Translates to: PVLSNAQASGPWIKD*AKTGRGQEPRASET Trigger: GGTTTCCGAGGCCCTGGGTTCCTGCCCTCTACCGGTCTTTGCTCAGTCCTTAATCCAGGGCCCACTAGCCTGGGCATTGGACAGCACAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR TCA 90 bp | GGCAGGCAACTGAGGAGGCCCACACTGTCACAACTTCAGGCAGTCTaGGCCAGGAAGGTCGGGCTGGCCAACTTCTCAAGGCCACGAACT | + |
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Preference number: 1 (lower is better) Translates to: GRQLRRPTLSQLQAV*ARKVGLANFSRPRT Trigger: AGTTCGTGGCCTTGAGAAGTTGGCCAGCCCGACCTTCCTGGCTCAGACTGCCTGAAGTTGTGACAGTGTGGGCCTCCTCAGTTGCCTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| 3UTR TCA 90 bp | CAAAGACCGGTAGAGGGCAGGAACCCAGGGCCTCGGAAACCTCAGTaGACTCTCCTTAAGGCTCCTGAGAACCAGAGTGGGTGCAGCACC | + |
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Preference number: 1 (lower is better) Translates to: QRPVEGRNPGPRKPQ*TLLKAPENQSGCST Trigger: GGTGCTGCACCCACTCTGGTTCTCAGGAGCCTTAAGGAGAGTTCACTGAGGTTTCCGAGGCCCTGGGTTCCTGCCCTCTACCGGTCTTTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR CCA 90 bp | AGTTTGAAGATGAACGGCAGACAGAGGAGGCTCTGGCAGGAGATCTaGAAGCGTTGGTCCCCACACAGCCTCTGCTCTGGCCTCTGGCCT | + |
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Preference number: 1 (lower is better) Translates to: SLKMNGRQRRLWQEI*KRWSPHSLCSGLWP Trigger: AGGCCAGAGGCCAGAGCAGAGGCTGTGTGGGGACCAACGCTTCCAGATCTCCTGCCAGAGCCTCCTCTGTCTGCCGTTCATCTTCAAACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR GCA 90 bp | AGGAAGGTCGGGCTGGCCAACTTCTCAAGGCCACGAACTCCTCTCTaGACCCTGGTGAACTATTCCATAGCGGAAGGTCTGCCTGTCTGC | + |
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Preference number: 1 (lower is better) Translates to: RKVGLANFSRPRTPL*TLVNYSIAEGLPVC Trigger: GCAGACAGGCAGACCTTCCGCTATGGAATAGTTCACCAGGGTGCAGAGAGGAGTTCGTGGCCTTGAGAAGTTGGCCAGCCCGACCTTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| 3UTR GCA 90 bp | CATGGGCCAGTGCCCAGAAAGGTGTGGTTTAGGAAGAAGCGCACATaGAGGAAGGGGCAGGCAACTGAGGAGGCCCACACTGTCACAACT | + |
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Preference number: 1 (lower is better) Translates to: HGPVPRKVWFRKKRT*RKGQATEEAHTVTT Trigger: AGTTGTGACAGTGTGGGCCTCCTCAGTTGCCTGCCCCTTCCTGCATGTGCGCTTCTTCCTAAACCACACCTTTCTGGGCACTGGCCCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| 3UTR TCA 90 bp | AACTGCACACAAAGCCTCGATGTTGGCCCTTTGGCTGGTCTGAGCTaGCCTTGGGTCAATGATTTGGGTCCACTCGGCAGGGTCAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: NCTQSLDVGPLAGLS*PWVNDLGPLGRVSS Trigger: AGAGCTGACCCTGCCGAGTGGACCCAAATCATTGACCCAAGGTCAGCTCAGACCAGCCAAAGGGCCAACATCGAGGCTTTGTGTGCAGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR GCA 90 bp | CTCTGCACCCTGGTGAACTATTCCATAGCGGAAGGTCTGCCTGTCTaGACATACACGGACAAGATGGGGAATGGCGAAGTTGCAGGGAGC | + |
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Preference number: 1 (lower is better) Translates to: LCTLVNYSIAEGLPV*TYTDKMGNGEVAGS Trigger: GCTCCCTGCAACTTCGCCATTCCCCATCTTGTCCGTGTATGTGCAGACAGGCAGACCTTCCGCTATGGAATAGTTCACCAGGGTGCAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| 3UTR GCA 90 bp | CCAGTATCTTATCTATGGAGCATTGAGGCACTGGCTGTAGGCCACTaGATTCAGGGTTGCTCTGTGTGCTGGGAGGGACACAATCTGGGG | + |
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Preference number: 1 (lower is better) Translates to: PVSYLWSIEALAVGH*IQGCSVCWEGHNLG Trigger: CCCCAGATTGTGTCCCTCCCAGCACACAGAGCAACCCTGAATGCAGTGGCCTACAGCCAGTGCCTCAATGCTCCATAGATAAGATACTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR TCA 90 bp | GGGTCGAAACTTTGGCATAAACCCAAAGGGACTGATGCTTGGCTCTaGGAGTTGCAGTGGCCCACGCCAGTCTCCTCCATAGAGTTTCTG | + |
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Preference number: 1 (lower is better) Translates to: GSKLWHKPKGTDAWL*ELQWPTPVSSIEFL Trigger: CAGAAACTCTATGGAGGAGACTGGCGTGGGCCACTGCAACTCTCAGAGCCAAGCATCAGTCCCTTTGGGTTTATGCCAAAGTTTCGACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR GCA 90 bp | TCTGCCTGTCTGCACATACACGGACAAGATGGGGAATGGCGAAGTTaGAGGGAGCTAAATCACACAGGTGTAAAGCAAGAGGTCACCCAG | + |
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Preference number: 1 (lower is better) Translates to: SACLHIHGQDGEWRS*RELNHTGVKQEVTQ Trigger: CTGGGTGACCTCTTGCTTTACACCTGTGTGATTTAGCTCCCTGCAACTTCGCCATTCCCCATCTTGTCCGTGTATGTGCAGACAGGCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| 3UTR CCA 90 bp | TTTACATCTAGGAACCAGGCCTGGAGCCTGAAAGGAAAGAGACTGTaGTCTGCATTCAGGGAAGAGCTGCACAGGTCAGCAGAACAGGTG | + |
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Preference number: 1 (lower is better) Translates to: FTSRNQAWSLKGKRL*SAFREELHRSAEQV Trigger: CACCTGTTCTGCTGACCTGTGCAGCTCTTCCCTGAATGCAGACCACAGTCTCTTTCCTTTCAGGCTCCAGGCCTGGTTCCTAGATGTAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR TCA 90 bp | GTTAATAAAGAGTTGTTTTTGTGGTCCTTCAGGAGGCCGGCTTCTTaGCAAGCACTGTTCAGGATCTCCAATGGAGTCCAAACCAGGAAG | + |
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Preference number: 1 (lower is better) Translates to: VNKELFLWSFRRPAS*QALFRISNGVQTRK Trigger: CTTCCTGGTTTGGACTCCATTGGAGATCCTGAACAGTGCTTGTCAAGAAGCCGGCCTCCTGAAGGACCACAAAAACAACTCTTTATTAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR CCA 90 bp | AATGAATACAGTCACATTAAATTGTTGGTTCACCCTATAGTTCTGTaGGTGGCCTGCCCTAAGGCTAGGATGGACAGGCAGTGTGACTGT | + |
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Preference number: 1 (lower is better) Translates to: NEYSHIKLLVHPIVL*VACPKARMDRQCDC Trigger: ACAGTCACACTGCCTGTCCATCCTAGCCTTAGGGCAGGCCACCCACAGAACTATAGGGTGAACCAACAATTTAATGTGACTGTATTCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR GCA 90 bp | TCTATTTCTGAAATCATGCAGTCCTCTTTTCGCCTTCACGTTCCTTaGTACTTCCACATTGTCCACGAGATGGCGCCAGATACCAATAGT | + |
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Preference number: 1 (lower is better) Translates to: SISEIMQSSFRLHVP*YFHIVHEMAPDTNS Trigger: ACTATTGGTATCTGGCGCCATCTCGTGGACAATGTGGAAGTAGCAAGGAACGTGAAGGCGAAAAGAGGACTGCATGATTTCAGAAATAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | CTCCTCAGCCTTAGGAGCCTCTTGCTCCTCCATGGTCCAGTCTCACCCCTGGACCTGGCCTTCTGGGTCTaGCCCTTTTGTCCTGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: LLSLRSLLLLHGPVSPLDLAFWV*PFCPGR Trigger: CCTCCCAGGACAAAAGGGCCAGACCCAGAAGGCCAG...GTCCAGGGGTGAGACTGGACCATGGAGGAGCAAGAGGCTCCTAAGGCTGAGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR CAA 90 bp | CACACAGCCTCTGTTCTGGCCTCTGGCCTTCTGGGTCTGGCCCTTTaGTCCTGGGAGGATGGGGGTATCTCTAGGTCCTGGCTACCTAGA | + |
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Preference number: 2 (lower is better) Translates to: HTASVLASGLLGLAL*SWEDGGISRSWLPR Trigger: TCTAGGTAGCCAGGACCTAGAGATACCCCCATCCTCCCAGGACAAAAGGGCCAGACCCAGAAGGCCAGAGGCCAGAACAGAGGCTGTGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | TTCTCCTCAGCCTTAGGAGCCTCTTGCTCCTCCATGGTCCAGTCTCACCCCTGGCGAGGGTTCAGGCTCTaGACCTTGCCAGCTCCATCA | + |
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Preference number: 2 (lower is better) Translates to: FSSALGASCSSMVQSHPWRGFRL*TLPAPS Trigger: TGATGGAGCTGGCAAGGTCCAGAGCCTGAACCCTCG...CCAGGGGTGAGACTGGACCATGGAGGAGCAAGAGGCTCCTAAGGCTGAGGAGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | GTCCCCACACAGCCTCTGTTCTGGCCTCTGGCCTTCTGGGTCTGGCCCTTTTGTGCCCTAAGGCTAGGATaGACAGGCAGTGTGACTGTG | + |
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Preference number: 2 (lower is better) Translates to: VPTQPLFWPLAFWVWPFCALRLG*TGSVTV Trigger: CACAGTCACACTGCCTGTCCATCCTAGCCTTAGGGC...ACAAAAGGGCCAGACCCAGAAGGCCAGAGGCCAGAACAGAGGCTGTGTGGGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR TCA 90 bp | AGTGAACTCTCCTTAAGGCTCCTGAGAACCAGAGTGGGTGCAGCACCCTGTCCTCAACTTCAGGCAGTCTaGGCCAGGAAGGTCGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: SELSLRLLRTRVGAAPCPQLQAV*ARKVGL Trigger: CAGCCCGACCTTCCTGGCTCAGACTGCCTGAAGTTG...AGGACAGGGTGCTGCACCCACTCTGGTTCTCAGGAGCCTTAAGGAGAGTTCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR TCA 90 bp | TTCTCCTCAGCCTTAGGAGCCTCTTGCTCCTCCATGGTCCAGTCTCACCCCTGGAGGAGGCCGGCTTCTTaGCAAGCACTGTTCAGGATC | + |
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Preference number: 2 (lower is better) Translates to: FSSALGASCSSMVQSHPWRRPAS*QALFRI Trigger: GATCCTGAACAGTGCTTGTCAAGAAGCCGGCCTCCT...CCAGGGGTGAGACTGGACCATGGAGGAGCAAGAGGCTCCTAAGGCTGAGGAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | GCCCACACTGTCACAACTTCAGGCAGTCTGAGCCAGGAAGGTCGGGCTGGCCAAGGACAAGATGGGGAATaGCGAAGTTGCAGGGAGCTA | + |
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Preference number: 2 (lower is better) Translates to: AHTVTTSGSLSQEGRAGQGQDGE*RSCREL Trigger: TAGCTCCCTGCAACTTCGCCATTCCCCATCTTGTCC...TTGGCCAGCCCGACCTTCCTGGCTCAGACTGCCTGAAGTTGTGACAGTGTGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| 3UTR-3UTR GCA 90 bp | GCCCACACTGTCACAACTTCAGGCAGTCTGAGCCAGGAAGGTCGGGCTGGCCAAGAAGGTCTGCCTGTCTaGACATACACGGACAAGATG | + |
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Preference number: 2 (lower is better) Translates to: AHTVTTSGSLSQEGRAGQEGLPV*TYTDKM Trigger: CATCTTGTCCGTGTATGTGCAGACAGGCAGACCTTC...TTGGCCAGCCCGACCTTCCTGGCTCAGACTGCCTGAAGTTGTGACAGTGTGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| 3UTR-3UTR GCA 90 bp | ACCCAGGGCCTCGGAAACCTCAGTGAACTCTCCTTAAGGCTCCTGAGAACCAGAGCATCCATGGGCCAGTaGCCAGAAAGGTGTGGTTTA | + |
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Preference number: 2 (lower is better) Translates to: TQGLGNLSELSLRLLRTRASMGQ*PERCGL Trigger: TAAACCACACCTTTCTGGGCACTGGCCCATGGATGC...TCTGGTTCTCAGGAGCCTTAAGGAGAGTTCACTGAGGTTTCCGAGGCCCTGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR GCA 90 bp | AATAAACTGCACACAAAGCCTCGATGTTGGCCCTTTGGCTGGTCTGAGCTGACCCGGCCCTGCAGAGCCTaGTACATCCTGGTGATTCAC | + |
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Preference number: 2 (lower is better) Translates to: NKLHTKPRCWPFGWSELTRPCRA*YILVIH Trigger: GTGAATCACCAGGATGTAGCAGGCTCTGCAGGGCCG...GGTCAGCTCAGACCAGCCAAAGGGCCAACATCGAGGCTTTGTGTGCAGTTTATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR GCA 90 bp | AATAAACTGCACACAAAGCCTCGATGTTGGCCCTTTGGCTGGTCTGAGCTGACCGTCCGCGTCCAACCCTaGAGCCTTTCTTCCCTCTCT | + |
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Preference number: 2 (lower is better) Translates to: NKLHTKPRCWPFGWSELTVRVQP*SLSSLS Trigger: AGAGAGGGAAGAAAGGCTGCAGGGTTGGACGCGGAC...GGTCAGCTCAGACCAGCCAAAGGGCCAACATCGAGGCTTTGTGTGCAGTTTATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | CTGGACCTTACTCAGAATGCTAAGAGCCACACTGAGGGGAGTTTGAAGATGAACTGGCCTCTGGCCTTCTaGGGTCCCCACACAGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: LDLTQNAKSHTEGSLKMNWPLAF*GPHTAS Trigger: AGAGGCTGTGTGGGGACCCCAGAAGGCCAGAGGCCA...GTTCATCTTCAAACTCCCCTCAGTGTGGCTCTTAGCATTCTGAGTAAGGTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | TCTCTCGCTCTAGAGAACCTAAACCCCACAGGAAGGAAACTGTGGCTTCCCCACACACAATCTGGGGATTaGGACCCGAGGGCAGTTAGT | + |
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Preference number: 2 (lower is better) Translates to: SLALENLNPTGRKLWLPHTQSGD*DPRAVS Trigger: ACTAACTGCCCTCGGGTCCCAATCCCCAGATTGTGT...GTGGGGAAGCCACAGTTTCCTTCCTGTGGGGTTTAGGTTCTCTAGAGCGAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR GCA 90 bp | GTCCCCACACAGCCTCTGTTCTGGCCTCTGGCCTTCTGGGTCTGGCCCTTTTGTAAGAGATTTGGTTGTTaGAACTCAATTGCTCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: VPTQPLFWPLAFWVWPFCKRFGC*NSIAPF Trigger: GAAAGGAGCAATTGAGTTGCAACAACCAAATCTCTT...ACAAAAGGGCCAGACCCAGAAGGCCAGAGGCCAGAACAGAGGCTGTGTGGGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR TCA 90 bp | CTGGACCTTACTCAGAATGCTAAGAGCCACACTGAGGGGAGTTTGAAGATGAACCCTCGGAAACCTCAGTaGACTCTCCTTAAGGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: LDLTQNAKSHTEGSLKMNPRKPQ*TLLKAP Trigger: AGGAGCCTTAAGGAGAGTTCACTGAGGTTTCCGAGG...GTTCATCTTCAAACTCCCCTCAGTGTGGCTCTTAGCATTCTGAGTAAGGTCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | GGGGACCTTATTCACATCTGCTCTCTCGCTCTAGAGAACCTAAACCCCACAGGAAAAGAGTTGTTTTTGTaGTCCTTCAGGAGGCCGGCT | + |
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Preference number: 2 (lower is better) Translates to: GDLIHICSLALENLNPTGKELFL*SFRRPA Trigger: AGCCGGCCTCCTGAAGGACCACAAAAACAACTCTTT...TCCTGTGGGGTTTAGGTTCTCTAGAGCGAGAGAGCAGATGTGAATAAGGTCCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | AGTGGAACATGGAGATCTGTCAGACATGGGCCCACAGACTTAGAAAGGAACTTTGGACAAGATGGGGAATaGCGAAGTTGCAGGGAGCTA | + |
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Preference number: 2 (lower is better) Translates to: SGTWRSVRHGPTDLERNFGQDGE*RSCREL Trigger: TAGCTCCCTGCAACTTCGCCATTCCCCATCTTGTCC...AAAGTTCCTTTCTAAGTCTGTGGGCCCATGTCTGACAGATCTCCATGTTCCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | CTGGACCTTACTCAGAATGCTAAGAGCCACACTGAGGGGAGTTTGAAGATGAACCATACACGGACAAGATaGGGAATGGCGAAGTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: LDLTQNAKSHTEGSLKMNHTRTR*GMAKLQ Trigger: CTGCAACTTCGCCATTCCCCATCTTGTCCGTGTATG...GTTCATCTTCAAACTCCCCTCAGTGTGGCTCTTAGCATTCTGAGTAAGGTCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR TCA 90 bp | CTTATTCACATCTGCTCTCTCGCTCTAGAGAACCTAAACCCCACAGGAAGGAAACCAGATACCAATAGTTaGAGATGGAAGCGTTGGGCC | + |
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Preference number: 2 (lower is better) Translates to: LIHICSLALENLNPTGRKPDTNS*RWKRWA Trigger: GGCCCAACGCTTCCATCTTCAACTATTGGTATCTGG...TTTCCTTCCTGTGGGGTTTAGGTTCTCTAGAGCGAGAGAGCAGATGTGAATAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR GCA 90 bp | CTTATTCACATCTGCTCTCTCGCTCTAGAGAACCTAAACCCCACAGGAAGGAAAGAAGGTCTGCCTGTCTaGACATACACGGACAAGATG | + |
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Preference number: 2 (lower is better) Translates to: LIHICSLALENLNPTGRKEGLPV*TYTDKM Trigger: CATCTTGTCCGTGTATGTGCAGACAGGCAGACCTTC...TTTCCTTCCTGTGGGGTTTAGGTTCTCTAGAGCGAGAGAGCAGATGTGAATAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR GCA 90 bp | CCTAACCTCTCCACTGTCCTATCTTTTGCCACAGCAGAGAAGGTAGAGACTCATAAAGAGACTGTGGTCTaGATTCAGGGAAGAGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: PNLSTVLSFATAEKVETHKETVV*IQGRAA Trigger: TGCAGCTCTTCCCTGAATGCAGACCACAGTCTCTTT...ATGAGTCTCTACCTTCTCTGCTGTGGCAAAAGATAGGACAGTGGAGAGGTTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR GCA 90 bp | CACATTAAATTGTTGGTTCACCCTATAGTTCTGTGGGTGGCCTGCCCTAAGGCTGTTTGCTTGCTTGCTTaGTTGCTTTGGATAGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: HIKLLVHPIVLWVACPKAVCLLA*LLWIAV Trigger: GACAGCTATCCAAAGCAAGCAAGCAAGCAAGCAAAC...AGCCTTAGGGCAGGCCACCCACAGAACTATAGGGTGAACCAACAATTTAATGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR CAA 90 bp | GTGGCCCAAGGCAAAAAGTGTAAGCTTACTGAAAAAGAGATTTGGTaGTTGCAACTCAATTGCTCCTTTCTGAACTTTGTAGAGGGCAAC | + |
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Preference number: 2 (lower is better) Translates to: VAQGKKCKLTEKEIW*LQLNCSFLNFVEGN Trigger: GTTGCCCTCTACAAAGTTCAGAAAGGAGCAATTGAGTTGCAACAACCAAATCTCTTTTTCAGTAAGCTTACACTTTTTGCCTTGGGCCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR-3UTR CCA 90 bp | CACATTAAATTGTTGGTTCACCCTATAGTTCTGTGGGTGGCCTGCCCTAAGGCTACTGAAAAAGAGATTTaGTTGTTGCAACTCAATTGC | + |
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Preference number: 2 (lower is better) Translates to: HIKLLVHPIVLWVACPKATEKEI*LLQLNC Trigger: GCAATTGAGTTGCAACAACCAAATCTCTTTTTCAGT...AGCCTTAGGGCAGGCCACCCACAGAACTATAGGGTGAACCAACAATTTAATGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR CAA 90 bp | GAACAGTCACTTAAGCTGCGGATGGATCTTGAAAGAATGTCAACTTaGCCTCTCCTAATTCTTCTAAAATATATTCTTAGTTGCATACTA | + |
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Preference number: 2 (lower is better) Translates to: EQSLKLRMDLERMST*PLLILLKYILSCIL Trigger: TAGTATGCAACTAAGAATATATTTTAGAAGAATTAGGAGAGGCAAAGTTGACATTCTTTCAAGATCCATCCGCAGCTTAAGTGACTGTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR CCA 72 bp | AGACAGAGGAGGCTCTGGCAGGAGATCTGGAAGCGTTaGTCCCCACACAGCCTCTGCTCTGGCCTCTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: RQRRLWQEIWKR*SPHSLCSGLWP Trigger: AGGCCAGAGGCCAGAGCAGAGGCTGTGTGGGGACCAACGCTTCCAGATCTCCTGCCAGAGCCTCCTCTGTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR TCA 72 bp | TCCAATGCCCAGGCTAGTGGGCCCTGGATTAAGGACTaGGCAAAGACCGGTAGAGGGCAGGAACCCAGGGCC | + |
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Preference number: 3 (lower is better) Translates to: SNAQASGPWIKD*AKTGRGQEPRA Trigger: GGCCCTGGGTTCCTGCCCTCTACCGGTCTTTGCTCAGTCCTTAATCCAGGGCCCACTAGCCTGGGCATTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR CCA 72 bp | GCTGTAGGCCACTGCATTCAGGGTTGCTCTGTGTGCTaGGAGGGACACAATCTGGGGATTGGGACCCGAGGG | + |
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Preference number: 3 (lower is better) Translates to: AVGHCIQGCSVC*EGHNLGIGTRG Trigger: CCCTCGGGTCCCAATCCCCAGATTGTGTCCCTCCCAGCACACAGAGCAACCCTGAATGCAGTGGCCTACAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR CCA 72 bp | CTGGCCTCTGGCCTTCTGGGTCTGGCCCTTTTGTCCTaGGAGGATGGGGGTATCTCTAGGTCCTGGCTACCT | + |
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Preference number: 3 (lower is better) Translates to: LASGLLGLALLS*EDGGISRSWLP Trigger: AGGTAGCCAGGACCTAGAGATACCCCCATCCTCCCAGGACAAAAGGGCCAGACCCAGAAGGCCAGAGGCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR CCA 72 bp | ATGAACGGCAGACAGAGGAGGCTCTGGCAGGAGATCTaGAAGCGTTGGTCCCCACACAGCCTCTGCTCTGGC | + |
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Preference number: 3 (lower is better) Translates to: MNGRQRRLWQEI*KRWSPHSLCSG Trigger: GCCAGAGCAGAGGCTGTGTGGGGACCAACGCTTCCAGATCTCCTGCCAGAGCCTCCTCTGTCTGCCGTTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| 3UTR TCA 72 bp | CTGAGGAGGCCCACACTGTCACAACTTCAGGCAGTCTaGGCCAGGAAGGTCGGGCTGGCCAACTTCTCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: LRRPTLSQLQAV*ARKVGLANFSR Trigger: CCTTGAGAAGTTGGCCAGCCCGACCTTCCTGGCTCAGACTGCCTGAAGTTGTGACAGTGTGGGCCTCCTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | CTGGCTGTAGGCCACTGCATTCAGGGTTGCTCTGTGTaGTGGGAGGGACACAATCTGGGGATTGGGACCCGA | + |
|
Preference number: 3 (lower is better) Translates to: LAVGHCIQGCSV*WEGHNLGIGTR Trigger: TCGGGTCCCAATCCCCAGATTGTGTCCCTCCCAGCACACAGAGCAACCCTGAATGCAGTGGCCTACAGCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR-3UTR CAA 90 bp | GTCCCCACACAGCCTCTGTTCTGGCCTCTGGCCTTCTGGGTCTGGCCCTTTTGTCAGGAGGCCGGCTTCTaGACAAGCACTGTTCAGGAT | + |
|
Preference number: 3 (lower is better) Translates to: VPTQPLFWPLAFWVWPFCQEAGF*TSTVQD Trigger: ATCCTGAACAGTGCTTGTCAAGAAGCCGGCCTCCTG...ACAAAAGGGCCAGACCCAGAAGGCCAGAGGCCAGAACAGAGGCTGTGTGGGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR TCA 72 bp | GTAGAGGGCAGGAACCCAGGGCCTCGGAAACCTCAGTaGACTCTCCTTAAGGCTCCTGAGAACCAGAGTGGG | + |
|
Preference number: 3 (lower is better) Translates to: VEGRNPGPRKPQ*TLLKAPENQSG Trigger: CCCACTCTGGTTCTCAGGAGCCTTAAGGAGAGTTCACTGAGGTTTCCGAGGCCCTGGGTTCCTGCCCTCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | GTGCCCAGAAAGGTGTGGTTTAGGAAGAAGCGCACATaGAGGAAGGGGCAGGCAACTGAGGAGGCCCACACT | + |
|
Preference number: 3 (lower is better) Translates to: VPRKVWFRKKRT*RKGQATEEAHT Trigger: AGTGTGGGCCTCCTCAGTTGCCTGCCCCTTCCTGCATGTGCGCTTCTTCCTAAACCACACCTTTCTGGGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | CCTCTCTGGTCTTTCTCCTCAGCCTTAGGAGCCTCTTaGTCCTCCATGGTCCAGTCTCACCCCTGGACATGG | + |
|
Preference number: 3 (lower is better) Translates to: PLWSFSSALGAS*SSMVQSHPWTW Trigger: CCATGTCCAGGGGTGAGACTGGACCATGGAGGAGCAAGAGGCTCCTAAGGCTGAGGAGAAAGACCAGAGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | GAATCGGGGTGGGAAGAGTCAGCTGTACCAGAAACCTaGTGTAGAGAAAGCTCCCAGGCGAGGGTTCAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: ESGWEESAVPET*CRESSQARVQA Trigger: AGCCTGAACCCTCGCCTGGGAGCTTTCTCTACAGCAGGTTTCTGGTACAGCTGACTCTTCCCACCCCGATTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CCA 72 bp | GGAGCCTCTTGCTCCTCCATGGTCCAGTCTCACCCCTaGACATGGACTTCAAGAAGCCCTTTCATCACCAGG | + |
|
Preference number: 3 (lower is better) Translates to: GASCSSMVQSHP*TWTSRSPFITR Trigger: CCTGGTGATGAAAGGGCTTCTTGAAGTCCATGTCCAGGGGTGAGACTGGACCATGGAGGAGCAAGAGGCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | TATCTATGGAGCATTGAGGCACTGGCTGTAGGCCACTaGATTCAGGGTTGCTCTGTGTGCTGGGAGGGACAC | + |
|
Preference number: 3 (lower is better) Translates to: YLWSIEALAVGH*IQGCSVCWEGH Trigger: GTGTCCCTCCCAGCACACAGAGCAACCCTGAATGCAGTGGCCTACAGCCAGTGCCTCAATGCTCCATAGATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CCA 72 bp | TTGCTCTGTGTGCTGGGAGGGACACAATCTGGGGATTaGGACCCGAGGGCAGTTAGTGGAACATGGAGATCT | + |
|
Preference number: 3 (lower is better) Translates to: LLCVLGGTQSGD*DPRAVSGTWRS Trigger: AGATCTCCATGTTCCACTAACTGCCCTCGGGTCCCAATCCCCAGATTGTGTCCCTCCCAGCACACAGAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR TCA 72 bp | TCCATAGAGTTTCTGCATGTTCCCATCCTTCCCAGCTaGCCTCTCGCACCACCACAAGCACGAACACATCCC | + |
|
Preference number: 3 (lower is better) Translates to: SIEFLHVPILPS*PLAPPQARTHP Trigger: GGGATGTGTTCGTGCTTGTGGTGGTGCGAGAGGTCAGCTGGGAAGGATGGGAACATGCAGAAACTCTATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR TCA 72 bp | GAGGGTTCAGGCTCTGGACCTTGCCAGCTCCATCACTaGCACAAATTACTATCACACAGCACACGTGGCCTG | + |
|
Preference number: 3 (lower is better) Translates to: EGSGSGPCQLHH*HKLLSHSTRGL Trigger: CAGGCCACGTGTGCTGTGTGATAGTAATTTGTGTCAGTGATGGAGCTGGCAAGGTCCAGAGCCTGAACCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | GTGCAGAGGGTGGAGGATGGGGACCTTATTCACATCTaGTCTCTCGCTCTAGAGAACCTAAACCCCACAGGA | + |
|
Preference number: 3 (lower is better) Translates to: VQRVEDGDLIHI*SLALENLNPTG Trigger: TCCTGTGGGGTTTAGGTTCTCTAGAGCGAGAGAGCAGATGTGAATAAGGTCCCCATCCTCCACCCTCTGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CCA 72 bp | CGGAAGGTCTGCCTGTCTGCACATACACGGACAAGATaGGGAATGGCGAAGTTGCAGGGAGCTAAATCACAC | + |
|
Preference number: 3 (lower is better) Translates to: RKVCLSAHTRTR*GMAKLQGAKSH Trigger: GTGTGATTTAGCTCCCTGCAACTTCGCCATTCCCCATCTTGTCCGTGTATGTGCAGACAGGCAGACCTTCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| 3UTR CCA 72 bp | GCTGTAGAGAAAGCTCCCAGGCGAGGGTTCAGGCTCTaGACCTTGCCAGCTCCATCACTGACACAAATTACT | + |
|
Preference number: 3 (lower is better) Translates to: AVEKAPRRGFRL*TLPAPSLTQIT Trigger: AGTAATTTGTGTCAGTGATGGAGCTGGCAAGGTCCAGAGCCTGAACCCTCGCCTGGGAGCTTTCTCTACAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CCA 72 bp | TCTGGGGATTGGGACCCGAGGGCAGTTAGTGGAACATaGAGATCTGTCAGACATGGGCCCACAGACTTAGAA | + |
|
Preference number: 3 (lower is better) Translates to: SGDWDPRAVSGT*RSVRHGPTDLE Trigger: TTCTAAGTCTGTGGGCCCATGTCTGACAGATCTCCATGTTCCACTAACTGCCCTCGGGTCCCAATCCCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR TCA 72 bp | TCCATAGGCCACCCCAGTATCTTATCTATGGAGCATTaGGGCACTGGCTGTAGGCCACTGCATTCAGGGTTG | + |
|
Preference number: 3 (lower is better) Translates to: SIGHPSILSMEH*GTGCRPLHSGL Trigger: CAACCCTGAATGCAGTGGCCTACAGCCAGTGCCTCAATGCTCCATAGATAAGATACTGGGGTGGCCTATGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR-3UTR CAA 90 bp | ACCCAGGGCCTCGGAAACCTCAGTGAACTCTCCTTAAGGCTCCTGAGAACCAGAGTAGAGGGCAACATTTaGTCACAATGTTGCTGGACG | + |
|
Preference number: 3 (lower is better) Translates to: TQGLGNLSELSLRLLRTRVEGNI*SQCCWT Trigger: CGTCCAGCAACATTGTGACAAAATGTTGCCCTCTAC...TCTGGTTCTCAGGAGCCTTAAGGAGAGTTCACTGAGGTTTCCGAGGCCCTGGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR-3UTR CAA 90 bp | GTCCCCACACAGCCTCTGTTCTGGCCTCTGGCCTTCTGGGTCTGGCCCTTTTGTAGTCACATTAAATTGTaGGTTCACCCTATAGTTCTG | + |
|
Preference number: 3 (lower is better) Translates to: VPTQPLFWPLAFWVWPFCSHIKL*VHPIVL Trigger: CAGAACTATAGGGTGAACCAACAATTTAATGTGACT...ACAAAAGGGCCAGACCCAGAAGGCCAGAGGCCAGAACAGAGGCTGTGTGGGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | CTGGTGAACTATTCCATAGCGGAAGGTCTGCCTGTCTaGACATACACGGACAAGATGGGGAATGGCGAAGTT | + |
|
Preference number: 3 (lower is better) Translates to: LVNYSIAEGLPV*TYTDKMGNGEV Trigger: AACTTCGCCATTCCCCATCTTGTCCGTGTATGTGCAGACAGGCAGACCTTCCGCTATGGAATAGTTCACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| 3UTR CCA 72 bp | TCTGCCTGTCTGCACATACACGGACAAGATGGGGAATaGCGAAGTTGCAGGGAGCTAAATCACACAGGTGTA | + |
|
Preference number: 3 (lower is better) Translates to: SACLHIHGQDGE*RSCRELNHTGV Trigger: TACACCTGTGTGATTTAGCTCCCTGCAACTTCGCCATTCCCCATCTTGTCCGTGTATGTGCAGACAGGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| 3UTR-3UTR CAA 90 bp | GGTGACAATGTCTGTCTAAAGGGGACAAAAGCACAGAAAGATCCCTGTGCTGTCTGGGGAATGGCGAAGTaGCAGGGAGCTAAATCACAC | + |
|
Preference number: 3 (lower is better) Translates to: GDNVCLKGTKAQKDPCAVWGMAK*QGAKSH Trigger: GTGTGATTTAGCTCCCTGCAACTTCGCCATTCCCCA...GACAGCACAGGGATCTTTCTGTGCTTTTGTCCCCTTTAGACAGACATTGTCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR-3UTR CAA 90 bp | TGGGTCTGGCCCTTTTGTCCTGGGAGGATGGGGGTATCTCTAGGTCCTGGCTACGAAAGAATGTCAACTTaGCCTCTCCTAATTCTTCTA | + |
|
Preference number: 3 (lower is better) Translates to: WVWPFCPGRMGVSLGPGYERMST*PLLILL Trigger: TAGAAGAATTAGGAGAGGCAAAGTTGACATTCTTTC...GTAGCCAGGACCTAGAGATACCCCCATCCTCCCAGGACAAAAGGGCCAGACCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR TCA 72 bp | GAGTTGTTTTTGTGGTCCTTCAGGAGGCCGGCTTCTTaGCAAGCACTGTTCAGGATCTCCAATGGAGTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: ELFLWSFRRPAS*QALFRISNGVQ Trigger: TTGGACTCCATTGGAGATCCTGAACAGTGCTTGTCAAGAAGCCGGCCTCCTGAAGGACCACAAAAACAACTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | CTGCACATACACGGACAAGATGGGGAATGGCGAAGTTaGAGGGAGCTAAATCACACAGGTGTAAAGCAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: LHIHGQDGEWRS*RELNHTGVKQE Trigger: CTCTTGCTTTACACCTGTGTGATTTAGCTCCCTGCAACTTCGCCATTCCCCATCTTGTCCGTGTATGTGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | GAAATCATGCAGTCCTCTTTTCGCCTTCACGTTCCTTaGTACTTCCACATTGTCCACGAGATGGCGCCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: EIMQSSFRLHVP*YFHIVHEMAPD Trigger: ATCTGGCGCCATCTCGTGGACAATGTGGAAGTAGCAAGGAACGTGAAGGCGAAAAGAGGACTGCATGATTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR TCA 72 bp | CATTCAGGGAAGAGCTGCACAGGTCAGCAGAACAGGTaGCAATGTCTGTCTAAAGGGGACAAAAGCACAGAA | + |
|
Preference number: 3 (lower is better) Translates to: HSGKSCTGQQNR*QCLSKGDKSTE Trigger: TTCTGTGCTTTTGTCCCCTTTAGACAGACATTGTCACCTGTTCTGCTGACCTGTGCAGCTCTTCCCTGAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR TCA 72 bp | GGAGTCCAAACCAGGAAGAACTCCCACGTCTATTTCTaGAATCATGCAGTCCTCTTTTCGCCTTCACGTTCC | + |
|
Preference number: 3 (lower is better) Translates to: GVQTRKNSHVYF*NHAVLFSPSRS Trigger: GGAACGTGAAGGCGAAAAGAGGACTGCATGATTTCAGAAATAGACGTGGGAGTTCTTCCTGGTTTGGACTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CCA 72 bp | CCATCACTGACACAAATTACTATCACACAGCACACGTaGCCTGTGGGTCGAAACTTTGGCATAAACCCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: PSLTQITITQHT*PVGRNFGINPK Trigger: CTTTGGGTTTATGCCAAAGTTTCGACCCACAGGCCACGTGTGCTGTGTGATAGTAATTTGTGTCAGTGATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CCA 72 bp | TTGCTTTTTAATAAACTGCACACAAAGCCTCGATGTTaGCCCTTTGGCTGGTCTGAGCTGACCTTGGGTCAA | + |
|
Preference number: 3 (lower is better) Translates to: LLFNKLHTKPRC*PFGWSELTLGQ Trigger: TTGACCCAAGGTCAGCTCAGACCAGCCAAAGGGCCAACATCGAGGCTTTGTGTGCAGTTTATTAAAAAGCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR-3UTR CAA 90 bp | CTTATTCACATCTGCTCTCTCGCTCTAGAGAACCTAAACCCCACAGGAAGGAAATGTTTGCTTGCTTGCTaGCTTGCTTTGGATAGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: LIHICSLALENLNPTGRKCLLAC*LALDSC Trigger: ACAGCTATCCAAAGCAAGCAAGCAAGCAAGCAAACA...TTTCCTTCCTGTGGGGTTTAGGTTCTCTAGAGCGAGAGAGCAGATGTGAATAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR-3UTR CAA 90 bp | CTTATTCACATCTGCTCTCTCGCTCTAGAGAACCTAAACCCCACAGGAAGGAAAAGCTGCGGATGGATCTaGAAAGAATGTCAACTTTGC | + |
|
Preference number: 3 (lower is better) Translates to: LIHICSLALENLNPTGRKSCGWI*KECQLC Trigger: GCAAAGTTGACATTCTTTCAAGATCCATCCGCAGCT...TTTCCTTCCTGTGGGGTTTAGGTTCTCTAGAGCGAGAGAGCAGATGTGAATAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR-3UTR CAA 90 bp | AATAAACTGCACACAAAGCCTCGATGTTGGCCCTTTGGCTGGTCTGAGCTGACCAGTGTTAATAAAGAGTaGTTTTTGTGGTCCTTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: NKLHTKPRCWPFGWSELTSVNKE*FLWSFR Trigger: CCTGAAGGACCACAAAAACAACTCTTTATTAACACT...GGTCAGCTCAGACCAGCCAAAGGGCCAACATCGAGGCTTTGTGTGCAGTTTATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | AACCAGGAAGAACTCCCACGTCTATTTCTGAAATCATaGAGTCCTCTTTTCGCCTTCACGTTCCTTGCTACT | + |
|
Preference number: 3 (lower is better) Translates to: NQEELPRLFLKS*SPLFAFTFLAT Trigger: AGTAGCAAGGAACGTGAAGGCGAAAAGAGGACTGCATGATTTCAGAAATAGACGTGGGAGTTCTTCCTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | CTTACTGAAAAAGAGATTTGGTTGTTGCAACTCAATTaGTCCTTTCTGAACTTTGTAGAGGGCAACATTTTG | + |
|
Preference number: 3 (lower is better) Translates to: LTEKEIWLLQLN*SFLNFVEGNIL Trigger: CAAAATGTTGCCCTCTACAAAGTTCAGAAAGGAGCAATTGAGTTGCAACAACCAAATCTCTTTTTCAGTAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR GCA 72 bp | TGTTCATTCATTAGTTTGTTCATTTGTTTGTTTGTTTaGTTGCTTGCTTGCTTGCTTTGGATAGCTGTCAAT | + |
|
Preference number: 3 (lower is better) Translates to: CSFISLFICLFV*LLACLLWIAVN Trigger: ATTGACAGCTATCCAAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAAATGAACAAACTAATGAATGAACA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CAA 72 bp | CAGACAGAGGAGGCTCTGGCAGGAGATCTGGAAGCGTaGGTCCCCACACAGCCTCTGCTCTGGCCTCTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: QTEEALAGDLEA*VPTQPLLWPLA Trigger: GGCCAGAGGCCAGAGCAGAGGCTGTGTGGGGACCAACGCTTCCAGATCTCCTGCCAGAGCCTCCTCTGTCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| CDS-3UTR GCA 90 bp | GTCGGGCTGGCCAACTTCTCAAGGCCACGAACTCCTCTCTGCACCCTGGTGAACGGAAGCAGCGGTACCTaGCGTCCGGGAACCTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: VGLANFSRPRTPLCTLVNGSSGT*RPGTWS Trigger: GCTCCAGGTTCCCGGACGGCAGGTACCGCTGCTTCC...GTTCACCAGGGTGCAGAGAGGAGTTCGTGGCCTTGAGAAGTTGGCCAGCCCGAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| CDS-3UTR CCA 90 bp | TGCCCAGAAAGGTGTGGTTTAGGAAGAAGCGCACATGCAGGAAGGGGCAGGCAATGCCGTCCGGGAACCTaGAGCACAGCAGGCTGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: CPERCGLGRSAHAGRGRQCRPGT*STAGWV Trigger: CACCCAGCCTGCTGTGCTCCAGGTTCCCGGACGGCA...TTGCCTGCCCCTTCCTGCATGTGCGCTTCTTCCTAAACCACACCTTTCTGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| CDS-3UTR CCA 90 bp | TTCTCCTCAGCCTTAGGAGCCTCTTGCTCCTCCATGGTCCAGTCTCACCCCTGGAAGAAGGGGATCTTGTaGCTTCCTGGGTGGCACTCC | + |
|
Preference number: 4 (lower is better) Translates to: FSSALGASCSSMVQSHPWKKGIL*LPGWHS Trigger: GGAGTGCCACCCAGGAAGCCACAAGATCCCCTTCTT...CCAGGGGTGAGACTGGACCATGGAGGAGCAAGAGGCTCCTAAGGCTGAGGAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| CDS-3UTR CCA 90 bp | CTGCACATACACGGACAAGATGGGGAATGGCGAAGTTGCAGGGAGCTAAATCACTGCCGTCCGGGAACCTaGAGCACAGCAGGCTGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LHIHGQDGEWRSCRELNHCRPGT*STAGWV Trigger: CACCCAGCCTGCTGTGCTCCAGGTTCCCGGACGGCA...GTGATTTAGCTCCCTGCAACTTCGCCATTCCCCATCTTGTCCGTGTATGTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| 3UTR CAA 72 bp | CCCTCTCTGGTCTTTCTCCTCAGCCTTAGGAGCCTCTaGCTCCTCCATGGTCCAGTCTCACCCCTGGACATG | + |
|
Preference number: 4 (lower is better) Translates to: PSLVFLLSLRSL*LLHGPVSPLDM Trigger: CATGTCCAGGGGTGAGACTGGACCATGGAGGAGCAAGAGGCTCCTAAGGCTGAGGAGAAAGACCAGAGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| CDS-3UTR GCA 90 bp | CACATTAAATTGTTGGTTCACCCTATAGTTCTGTGGGTGGCCTGCCCTAAGGCTGGAAGCAGCGGTACCTaGCGTCCGGGAACCTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: HIKLLVHPIVLWVACPKAGSSGT*RPGTWS Trigger: GCTCCAGGTTCCCGGACGGCAGGTACCGCTGCTTCC...AGCCTTAGGGCAGGCCACCCACAGAACTATAGGGTGAACCAACAATTTAATGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| CDS-3UTR CCA 90 bp | CTGCACATACACGGACAAGATGGGGAATGGCGAAGTTGCAGGGAGCTAAATCACAAGAAGGGGATCTTGTaGCTTCCTGGGTGGCACTCC | + |
|
Preference number: 4 (lower is better) Translates to: LHIHGQDGEWRSCRELNHKKGIL*LPGWHS Trigger: GGAGTGCCACCCAGGAAGCCACAAGATCCCCTTCTT...GTGATTTAGCTCCCTGCAACTTCGCCATTCCCCATCTTGTCCGTGTATGTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
||
| 3UTR CAA 72 bp | GAGAAAGCTCCCAGGCGAGGGTTCAGGCTCTGGACCTaGCCAGCTCCATCACTGACACAAATTACTATCACA | + |
|
Preference number: 4 (lower is better) Translates to: EKAPRRGFRLWT*PAPSLTQITIT Trigger: TGTGATAGTAATTTGTGTCAGTGATGGAGCTGGCAAGGTCCAGAGCCTGAACCCTCGCCTGGGAGCTTTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CAA 72 bp | CTTACTCAGAATGCTAAGAGCCACACTGAGGGGAGTTaGAAGATGAACGGCAGACAGAGGAGGCTCTGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LTQNAKSHTEGS*KMNGRQRRLWQ Trigger: CTGCCAGAGCCTCCTCTGTCTGCCGTTCATCTTCAAACTCCCCTCAGTGTGGCTCTTAGCATTCTGAGTAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CAA 72 bp | AGAGTTGTTTTTGTGGTCCTTCAGGAGGCCGGCTTCTaGACAAGCACTGTTCAGGATCTCCAATGGAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: RVVFVVLQEAGF*TSTVQDLQWSP Trigger: TGGACTCCATTGGAGATCCTGAACAGTGCTTGTCAAGAAGCCGGCCTCCTGAAGGACCACAAAAACAACTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CAA 72 bp | ATTAAAAACGAAAATGAATACAGTCACATTAAATTGTaGGTTCACCCTATAGTTCTGTGGGTGGCCTGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: IKNENEYSHIKL*VHPIVLWVACP Trigger: AGGGCAGGCCACCCACAGAACTATAGGGTGAACCAACAATTTAATGTGACTGTATTCATTTTCGTTTTTAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CAA 72 bp | GACATTAAAAACGAAAATGAATACAGTCACATTAAATaGTTGGTTCACCCTATAGTTCTGTGGGTGGCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: DIKNENEYSHIK*LVHPIVLWVAC Trigger: GCAGGCCACCCACAGAACTATAGGGTGAACCAACAATTTAATGTGACTGTATTCATTTTCGTTTTTAATGTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
||
| 3UTR CAA 72 bp | CTTAAGCTGCGGATGGATCTTGAAAGAATGTCAACTTaGCCTCTCCTAATTCTTCTAAAATATATTCTTAGT | + |
|
Preference number: 4 (lower is better) Translates to: LKLRMDLERMST*PLLILLKYILS Trigger: ACTAAGAATATATTTTAGAAGAATTAGGAGAGGCAAAGTTGACATTCTTTCAAGATCCATCCGCAGCTTAAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| CDS-3UTR CAA 90 bp | ACCCAGGGCCTCGGAAACCTCAGTGAACTCTCCTTAAGGCTCCTGAGAACCAGACTCAAGAAGGGGATCTaGTGGCTTCCTGGGTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: TQGLGNLSELSLRLLRTRLKKGI*WLPGWH Trigger: GTGCCACCCAGGAAGCCACAAGATCCCCTTCTTGAG...TCTGGTTCTCAGGAGCCTTAAGGAGAGTTCACTGAGGTTTCCGAGGCCCTGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| CDS-3UTR CAA 90 bp | CTGCACATACACGGACAAGATGGGGAATGGCGAAGTTGCAGGGAGCTAAATCACCTCAAGAAGGGGATCTaGTGGCTTCCTGGGTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: LHIHGQDGEWRSCRELNHLKKGI*WLPGWH Trigger: GTGCCACCCAGGAAGCCACAAGATCCCCTTCTTGAG...GTGATTTAGCTCCCTGCAACTTCGCCATTCCCCATCTTGTCCGTGTATGTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| CDS CAA 90 bp | GAGCAGGGACAGGTATGGTGTTGGCGTTTCCTCAAGAAGGGGATCTaGTGGCTTCCTGGGTGGCACTCCTCTCCTTCACGCCCCAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: EQGQVWCWRFLKKGI*WLPGWHSSPSRPSG Trigger: CCCACTGGGGCGTGAAGGAGAGGAGTGCCACCCAGGAAGCCACAAGATCCCCTTCTTGAGGAAACGCCAACACCATACCTGTCCCTGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| CDS CCA 72 bp | CACAGACTGATAGCGCAGCAGGTGCCGGCCCCACACTaGATATCTCGTTCACAGGCCTTGGTCTTCACGACG | + |
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Preference number: 6 (lower is better) Translates to: HRLIAQQVPAPH*ISRSQALVFTT Trigger: CGTCGTGAAGACCAAGGCCTGTGAACGAGATATCCAGTGTGGGGCCGGCACCTGCTGCGCTATCAGTCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197758.5 |
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| CDS CCA 72 bp | GTATGGTGTTGGCGTTTCCTCAAGAAGGGGATCTTGTaGCTTCCTGGGTGGCACTCCTCTCCTTCACGCCCC | + |
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Preference number: 6 (lower is better) Translates to: VWCWRFLKKGIL*LPGWHSSPSRP Trigger: GGGGCGTGAAGGAGAGGAGTGCCACCCAGGAAGCCACAAGATCCCCTTCTTGAGGAAACGCCAACACCATAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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| CDS CCA 72 bp | CACAGCAGGCTGGGTGAGCAGGGACAGGTATGGTGTTaGCGTTTCCTCAAGAAGGGGATCTTGTGGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: HSRLGEQGQVWC*RFLKKGILWLP Trigger: AGGAAGCCACAAGATCCCCTTCTTGAGGAAACGCCAACACCATACCTGTCCCTGCTCACCCAGCCTGCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049852.10 ENSMUST00000197758.5 |
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