Pregenerated sensors for PROCA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044122Ensembl transcript IDs: ENSMUST00000060539.13, ENSMUST00000108317.3
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTGTACTCGCTCTCCAGCCCTCCCGGGCTTTCTGGGCTAGACTCTaGTGTCCTCACGGGTCCTCTTACGGATTGGCTCAGATCAGCAGG | + |
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Preference number: 1 (lower is better) Translates to: TVLALQPSRAFWARL*CPHGSSYGLAQISR Trigger: CCTGCTGATCTGAGCCAATCCGTAAGAGGACCCGTGAGGACACCAGAGTCTAGCCCAGAAAGCCCGGGAGGGCTGGAGAGCGAGTACAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR CCA 90 bp | GAACCTCAGTGGCTGACCCTGTGTTTGGGTCAGGAGGTCTGGCACTaGGACTTAAATGATTTTTCCTGGAAACCCAGTTCTCTTCCAGAT | + |
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Preference number: 1 (lower is better) Translates to: EPQWLTLCLGQEVWH*DLNDFSWKPSSLPD Trigger: ATCTGGAAGAGAACTGGGTTTCCAGGAAAAATCATTTAAGTCCCAGTGCCAGACCTCCTGACCCAAACACAGGGTCAGCCACTGAGGTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR CCA 90 bp | AGTCAGGAACCTCAGTGGCTGACCCTGTGTTTGGGTCAGGAGGTCTaGCACTGGGACTTAAATGATTTTTCCTGGAAACCCAGTTCTCTT | + |
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Preference number: 1 (lower is better) Translates to: SQEPQWLTLCLGQEV*HWDLNDFSWKPSSL Trigger: AAGAGAACTGGGTTTCCAGGAAAAATCATTTAAGTCCCAGTGCCAGACCTCCTGACCCAAACACAGGGTCAGCCACTGAGGTTCCTGACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR TCA 90 bp | TGCTCTTTCTCCTTTCTCTTTATATCCTTGATGACGTTGCTTTCCTaGCACTTTTCTATGGGACTTTCAGAACGCCAGATAGTGATGGGC | + |
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Preference number: 1 (lower is better) Translates to: CSFSFLFISLMTLLS*HFSMGLSERQIVMG Trigger: GCCCATCACTATCTGGCGTTCTGAAAGTCCCATAGAAAAGTGTCAGGAAAGCAACGTCATCAAGGATATAAAGAGAAAGGAGAAAGAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR CCA 90 bp | TGTTTGGGTCAGGAGGTCTGGCACTGGGACTTAAATGATTTTTCCTaGAAACCCAGTTCTCTTCCAGATCGTCATCTGTCATATACATAT | + |
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Preference number: 1 (lower is better) Translates to: CLGQEVWHWDLNDFS*KPSSLPDRHLSYTY Trigger: ATATGTATATGACAGATGACGATCTGGAAGAGAACTGGGTTTCCAGGAAAAATCATTTAAGTCCCAGTGCCAGACCTCCTGACCCAAACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR-3UTR CCA 90 bp | GTAGCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCCCCTTAAAGGATCCCTaGAGCCCCTCCCATAAGAGG | + |
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Preference number: 2 (lower is better) Translates to: VAFRSAGHHRMHVTTLFSPLKDP*SPSHKR Trigger: CCTCTTATGGGAGGGGCTCCAGGGATCCTTTAAGGG...GGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGCTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| 3UTR-3UTR TCA 90 bp | GCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCCACCATAAGAGGCCCTGTTaGAGGCAGAGAATAGCGGTA | + |
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Preference number: 2 (lower is better) Translates to: AFRSAGHHRMHVTTLFSHHKRPC*RQRIAV Trigger: TACCGCTATTCTCTGCCTTCAACAGGGCCTCTTATG...GTGGGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| 3UTR-3UTR CCA 90 bp | TTGTCCCATTCTTTTTGGCCTGGCCAGATGATGTCTTCTCTTTCTTTCTGGGGGTTCTGGGCTAGACTCTaGTGTCCTCACGGGTCCTCT | + |
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Preference number: 2 (lower is better) Translates to: LSHSFWPGQMMSSLSFWGFWARL*CPHGSS Trigger: AGAGGACCCGTGAGGACACCAGAGTCTAGCCCAGAA...CCCCCAGAAAGAAAGAGAAGACATCATCTGGCCAGGCCAAAAAGAATGGGACAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR-3UTR TCA 90 bp | CACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGAGTTGTTCTCTCTCCCTCCGGTCAGTTACAGGCTTaGTTTATTATTCACTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: HFPNRFSHLVLRVVLSPSGQLQA*FIIHSV Trigger: AACAGAGTGAATAATAAATCAAGCCTGTAACTGACC...GGAGGGAGAGAGAACAACTCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| 3UTR-3UTR CCA 90 bp | TTTTGGCCTGGCCAGATGATGTCTTCTCTTTCTTTCTGGGGGACAATGACTCTATTAAATGATTTTTCCTaGAAACCCAGTTCTCTTCCA | + |
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Preference number: 2 (lower is better) Translates to: FWPGQMMSSLSFWGTMTLLNDFS*KPSSLP Trigger: TGGAAGAGAACTGGGTTTCCAGGAAAAATCATTTAA...TAGAGTCATTGTCCCCCAGAAAGAAAGAGAAGACATCATCTGGCCAGGCCAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR TCA 72 bp | AAGGATCCCTGGAGCCCCTCCCATAAGAGGCCCTGTTaGAGGCAGAGAATAGCGGTAGGGTCAGTTACAGGC | + |
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Preference number: 3 (lower is better) Translates to: KDPWSPSHKRPC*RQRIAVGSVTG Trigger: GCCTGTAACTGACCCTACCGCTATTCTCTGCCTTCAACAGGGCCTCTTATGGGAGGGGCTCCAGGGATCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| 3UTR CCA 72 bp | CTAGACTCTGGTGTCCTCACGGGTCCTCTTACGGATTaGCTCAGATCAGCAGGGGAAGACTCCGACTTCACT | + |
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Preference number: 3 (lower is better) Translates to: LDSGVLTGPLTD*LRSAGEDSDFT Trigger: AGTGAAGTCGGAGTCTTCCCCTGCTGATCTGAGCCAATCCGTAAGAGGACCCGTGAGGACACCAGAGTCTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR CCA 72 bp | CCTCAGTGGCTGACCCTGTGTTTGGGTCAGGAGGTCTaGCACTGGGACTTAAATGATTTTTCCTGGAAACCC | + |
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Preference number: 3 (lower is better) Translates to: PQWLTLCLGQEV*HWDLNDFSWKP Trigger: GGGTTTCCAGGAAAAATCATTTAAGTCCCAGTGCCAGACCTCCTGACCCAAACACAGGGTCAGCCACTGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR CCA 72 bp | TGGCTGACCCTGTGTTTGGGTCAGGAGGTCTGGCACTaGGACTTAAATGATTTTTCCTGGAAACCCAGTTCT | + |
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Preference number: 3 (lower is better) Translates to: WLTLCLGQEVWH*DLNDFSWKPSS Trigger: AGAACTGGGTTTCCAGGAAAAATCATTTAAGTCCCAGTGCCAGACCTCCTGACCCAAACACAGGGTCAGCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR CCA 72 bp | CAGGAGGTCTGGCACTGGGACTTAAATGATTTTTCCTaGAAACCCAGTTCTCTTCCAGATCGTCATCTGTCA | + |
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Preference number: 3 (lower is better) Translates to: QEVWHWDLNDFS*KPSSLPDRHLS Trigger: TGACAGATGACGATCTGGAAGAGAACTGGGTTTCCAGGAAAAATCATTTAAGTCCCAGTGCCAGACCTCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR-3UTR CAA 90 bp | GTAGCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCGGGTCAGTTACAGGCTaGATTTATTATTCACTCTGT | + |
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Preference number: 3 (lower is better) Translates to: VAFRSAGHHRMHVTTLFSGSVTG*IYYSLC Trigger: ACAGAGTGAATAATAAATCAAGCCTGTAACTGACCC...GGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| 3UTR TCA 72 bp | TCCTTTCTCTTTATATCCTTGATGACGTTGCTTTCCTaGCACTTTTCTATGGGACTTTCAGAACGCCAGATA | + |
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Preference number: 3 (lower is better) Translates to: SFLFISLMTLLS*HFSMGLSERQI Trigger: TATCTGGCGTTCTGAAAGTCCCATAGAAAAGTGTCAGGAAAGCAACGTCATCAAGGATATAAAGAGAAAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| 3UTR CAA 72 bp | GCTAGACTCTGGTGTCCTCACGGGTCCTCTTACGGATaGGCTCAGATCAGCAGGGGAAGACTCCGACTTCAC | + |
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Preference number: 4 (lower is better) Translates to: ARLWCPHGSSYG*AQISRGRLRLH Trigger: GTGAAGTCGGAGTCTTCCCCTGCTGATCTGAGCCAATCCGTAAGAGGACCCGTGAGGACACCAGAGTCTAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| CDS-3UTR CCA 90 bp | CCCCCTACCCACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGAGTTGTTCTCCCGAGAAGGGGTGGATaGTATGCCCGGGACAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: PPTHFPNRFSHLVLRVVLPRRGG*YARDSA Trigger: AGCACTGTCCCGGGCATACCATCCACCCCTTCTCGG...GAGAACAACTCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTGGGTAGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CCA 90 bp | GCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCCACCAGTCCGAGAAGGGGTaGATGGTATGCCCGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: AFRSAGHHRMHVTTLFSHQSEKG*MVCPGQ Trigger: CTGTCCCGGGCATACCATCCACCCCTTCTCGGACTG...GTGGGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR GCA 90 bp | GTTCTCCCACCCCCTACCCACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGAGTATGCCCGGGACAGTaGTGGTGTTTCCAGCAACGT | + |
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Preference number: 4 (lower is better) Translates to: VLPPPTHFPNRFSHLVLRVCPGQ*WCFQQR Trigger: ACGTTGCTGGAAACACCAGCACTGTCCCGGGCATAC...TCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTGGGTAGGGGGTGGGAGAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR GCA 90 bp | CTTTCTGGGCTAGACTCTGGTGTCCTCACGGGTCCTCTTACGGATTGGCTCAGACGGTTCTCTCAATTTTaGGGCCAGACCTTTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LSGLDSGVLTGPLTDWLRRFSQF*GQTFPQ Trigger: CTGAGGAAAGGTCTGGCCGCAAAATTGAGAGAACCG...TCTGAGCCAATCCGTAAGAGGACCCGTGAGGACACCAGAGTCTAGCCCAGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| CDS-3UTR CCA 90 bp | CTCCCACCCCCTACCCACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGAGTTAGTCAGGAACCTCAGTaGCTGACCCTGTGTTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: LPPPTHFPNRFSHLVLRVSQEPQ*LTLCLG Trigger: ACCCAAACACAGGGTCAGCCACTGAGGTTCCTGACT...AACTCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTGGGTAGGGGGTGGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CCA 90 bp | GCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCCACTTCTGGGCTAGACTCTaGTGTCCTCACGGGTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: AFRSAGHHRMHVTTLFSHFWARL*CPHGSS Trigger: AGAGGACCCGTGAGGACACCAGAGTCTAGCCCAGAA...GTGGGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CCA 90 bp | GTAGCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCTGCCCGGGACAGTGCTaGTGTTTCCAGCAACGTCTG | + |
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Preference number: 4 (lower is better) Translates to: VAFRSAGHHRMHVTTLFSCPGQC*CFQQRL Trigger: CAGACGTTGCTGGAAACACCAGCACTGTCCCGGGCA...GGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| 3UTR CAA 72 bp | CTGATAAGTCAGGAACCTCAGTGGCTGACCCTGTGTTaGGGTCAGGAGGTCTGGCACTGGGACTTAAATGAT | + |
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Preference number: 4 (lower is better) Translates to: LISQEPQWLTLC*GQEVWHWDLND Trigger: ATCATTTAAGTCCCAGTGCCAGACCTCCTGACCCAAACACAGGGTCAGCCACTGAGGTTCCTGACTTATCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060539.13 |
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| CDS-3UTR GCA 90 bp | CACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGAGTTGTTCTCTCTCCCTCCCGGTTCTCTCAATTTTaGGGCCAGACCTTTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: HFPNRFSHLVLRVVLSPSRFSQF*GQTFPQ Trigger: CTGAGGAAAGGTCTGGCCGCAAAATTGAGAGAACCG...GGAGGGAGAGAGAACAACTCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CCA 90 bp | GCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCCACACAGAGACAGGCCTGTaGCTTCTACACCTAGATTCA | + |
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Preference number: 4 (lower is better) Translates to: AFRSAGHHRMHVTTLFSHTETGL*LLHLDS Trigger: TGAATCTAGGTGTAGAAGCCACAGGCCTGTCTCTGT...GTGGGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR GCA 90 bp | GTAGCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCGGGATGGTAAATTATTaGCACAGAGACAGGCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: VAFRSAGHHRMHVTTLFSGMVNY*HRDRPV Trigger: CACAGGCCTGTCTCTGTGGCAATAATTTACCATCCC...GGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CCA 90 bp | GCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCCACCCTGACACTTTTCTATaGGACTTTCAGAACGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: AFRSAGHHRMHVTTLFSHPDTFL*DFQNAR Trigger: TCTGGCGTTCTGAAAGTCCCATAGAAAAGTGTCAGG...GTGGGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR TCA 90 bp | CACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGAGTTGTTCTCTCTCCCTCCGCACTGGGACTTAAATaGTTTTTCCTGGAAACCCAG | + |
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Preference number: 4 (lower is better) Translates to: HFPNRFSHLVLRVVLSPSALGLK*FFLETQ Trigger: CTGGGTTTCCAGGAAAAATCATTTAAGTCCCAGTGC...GGAGGGAGAGAGAACAACTCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR TCA 90 bp | GTAGCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCTTTGGCCTGGCCAGATaGTGTCTTCTCTTTCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: VAFRSAGHHRMHVTTLFSFGLAR*CLLFLS Trigger: AGAAAGAAAGAGAAGACATCATCTGGCCAGGCCAAA...GGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGCTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CCA 90 bp | GCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCCACCTCTTGCTCGTTTTCTaGGTTTCTTTCTTTGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: AFRSAGHHRMHVTTLFSHLLLVF*VSFFVP Trigger: TGGGACAAAGAAAGAAACCCAGAAAACGAGCAAGAG...GTGGGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CCA 90 bp | GTAGCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCTCTTCTCTTTCTTTCTaGGGGACAATGACTCTACAA | + |
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Preference number: 4 (lower is better) Translates to: VAFRSAGHHRMHVTTLFSSSLSF*GTMTLQ Trigger: TTGTAGAGTCATTGTCCCCCAGAAAGAAAGAGAAGA...GGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGCTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CCA 90 bp | GCATTTCGTAGTGCTGGCCACCACAGAATGCATGTGACAACACTGTTCTCCCACTTAAATGATTTTTCCTaGAAACCCAGTTCTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: AFRSAGHHRMHVTTLFSHLNDFS*KPSSLP Trigger: TGGAAGAGAACTGGGTTTCCAGGAAAAATCATTTAA...GTGGGAGAACAGTGTTGTCACATGCATTCTGTGGTGGCCAGCACTACGAAATGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CAA 90 bp | CCCCCTACCCACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGAGTTGTTCTCCAGCTGAGATTGGGGTaGGGCACTGGGGAAGATTTT | + |
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Preference number: 5 (lower is better) Translates to: PPTHFPNRFSHLVLRVVLQLRLG*GTGEDF Trigger: AAAATCTTCCCCAGTGCCCAACCCCAATCTCAGCTG...GAGAACAACTCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTGGGTAGGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CAA 90 bp | GTTCTCCCACCCCCTACCCACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGACGTCTGTCTGTCTCCTaGTTCTCACCTTCAGAAAAG | + |
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Preference number: 5 (lower is better) Translates to: VLPPPTHFPNRFSHLVLRRLSVS*FSPSEK Trigger: CTTTTCTGAAGGTGAGAACAAGGAGACAGACAGACG...TCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTGGGTAGGGGGTGGGAGAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CAA 90 bp | CCCCCTACCCACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGAGTTGTTCTCTGGGATGGTAAATTATaGCCACAGAGACAGGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: PPTHFPNRFSHLVLRVVLWDGKL*PQRQAC Trigger: ACAGGCCTGTCTCTGTGGCAATAATTTACCATCCCA...GAGAACAACTCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTGGGTAGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS-3UTR CAA 90 bp | CCCCCTACCCACTTCCCAAATAGATTCTCCCACCTAGTCCTGAGAGTTGTTCTCTCTGGGTTTCTTTCTTaGTCCCATTCTTTTTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: PPTHFPNRFSHLVLRVVLSGFLS*SHSFWP Trigger: AGGCCAAAAAGAATGGGACAAAGAAAGAAACCCAGA...GAGAACAACTCTCAGGACTAGGTGGGAGAATCTATTTGGGAAGTGGGTAGGGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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| CDS CAA 90 bp | TGCCCGGGACAGTGCTGGTGTTTCCAGCAACGTCTGTCTGTCTCCTaGTTCTCACCTTCAGAAAAGGAAAATAGATCACTGCTGGAGTCC | + |
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Preference number: 6 (lower is better) Translates to: CPGQCWCFQQRLSVS*FSPSEKENRSLLES Trigger: GGACTCCAGCAGTGATCTATTTTCCTTTTCTGAAGGTGAGAACAAGGAGACAGACAGACGTTGCTGGAAACACCAGCACTGTCCCGGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108317.3 |
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