Pregenerated sensors for PRNP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079037Ensembl transcript IDs: ENSMUST00000091288.13
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGAATTTCTTTCCCACTTTGGAATGGAGCCTACTTCTCTTATCTaGAGCCTAAGAGAATGTTTAGATTGTCTCTCTGTTATCCAGTTC | + |
|
Preference number: 1 (lower is better) Translates to: AEFLSHFGMEPTSLI*SLRECLDCLSVIQF Trigger: GAACTGGATAACAGAGAGACAATCTAAACATTCTCTTAGGCTGCAGATAAGAGAAGTAGGCTCCATTCCAAAGTGGGAAAGAAATTCTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR-3UTR CCA 90 bp | CTCCCGTCACAGGAGGACCAAGCTTTTTACAGGGCTGGCTCTCCTCAGAGTCAATGTCACCTTGTACTCTaGGTACAAGTCAGGGGATAC | + |
|
Preference number: 2 (lower is better) Translates to: LPSQEDQAFYRAGSPQSQCHLVL*VQVRGY Trigger: GTATCCCCTGACTTGTACCCAGAGTACAAGGTGACA...TTGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGTGACGGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR CAA 90 bp | GTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGTGGCTTCTTaGGTTGTAGAACCCTTTGCCTATGCTAAGTTACATGTGTCACTG | + |
|
Preference number: 2 (lower is better) Translates to: VGGCFPGRHPQTVAS*VVEPFAYAKLHVSL Trigger: CAGTGACACATGTAACTTAGCATAGGCAAAGGGTTCTACAACCAAAGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR-3UTR TCA 90 bp | CTATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGTGGCTTCTACAGAGAAGCAAGAATaGGAACCACCTCAATTGAAA | + |
|
Preference number: 2 (lower is better) Translates to: LSQVGGCFPGRHPQTVASTEKQE*EPPQLK Trigger: TTTCAATTGAGGTGGTTCTCATTCTTGCTTCTCTGT...AGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCACCTGGGATAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR-3UTR CCA 90 bp | AACAATGCTAGCAGAATTTCTTTCCCACTTTGGAATGGAGCCTACTTCTCTTATGTGTTATATTCTTATTaGCCCGGTGTTAGCACTGGC | + |
|
Preference number: 2 (lower is better) Translates to: NNASRISFPLWNGAYFSYVLYSY*PGVSTG Trigger: GCCAGTGCTAACACCGGGCCAATAAGAATATAACAC...ATAAGAGAAGTAGGCTCCATTCCAAAGTGGGAAAGAAATTCTGCTAGCATTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR CAA 90 bp | GCAGTTTATGTCTGCTGGGGTAAAAAGCAACTTCAGGAACAAATTTaGCCTGATTTAAACAATGCTAGCAGAATTTCTTTCCCACTTTGG | + |
|
Preference number: 2 (lower is better) Translates to: AVYVCWGKKQLQEQI*PDLNNASRISFPLW Trigger: CCAAAGTGGGAAAGAAATTCTGCTAGCATTGTTTAAATCAGGCAAAATTTGTTCCTGAAGTTGCTTTTTACCCCAGCAGACATAAACTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR CAA 90 bp | AATGGAGCCTACTTCTCTTATCTGCAGCCTAAGAGAATGTTTAGATaGTCTCTCTGTTATCCAGTTCAAATAGAAGTACAGAAACATAGG | + |
|
Preference number: 2 (lower is better) Translates to: NGAYFSYLQPKRMFR*SLCYPVQIEVQKHR Trigger: CCTATGTTTCTGTACTTCTATTTGAACTGGATAACAGAGAGACAATCTAAACATTCTCTTAGGCTGCAGATAAGAGAAGTAGGCTCCATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR CCA 72 bp | TTCCCAGGGCCCATCAGTGCCAGGGGTATTAGCCTATaGGGGACACAGAGAAGCAAGAATGAGAACCACCTC | + |
|
Preference number: 3 (lower is better) Translates to: FPGPISARGISL*GTQRSKNENHL Trigger: GAGGTGGTTCTCATTCTTGCTTCTCTGTGTCCCCCATAGGCTAATACCCCTGGCACTGATGGGCCCTGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR TCA 72 bp | GGGACACAGAGAAGCAAGAATGAGAACCACCTCAATTaGAAGAGCTACAGGTGGATAACCCCTCCCCCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: GTQRSKNENHLN*KSYRWITPPPA Trigger: GGCTGGGGGAGGGGTTATCCACCTGTAGCTCTTTCAATTGAGGTGGTTCTCATTCTTGCTTCTCTGTGTCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR-3UTR CAA 90 bp | ACAGGAGGACCAAGCTTTTTACAGGGCTGGCTCTCCTCAGAGTCAAGATCTCCTCAAACAGTGGCTTCTTaGGTTGTAGAACCCTTTGCC | + |
|
Preference number: 3 (lower is better) Translates to: TGGPSFLQGWLSSESRSPQTVAS*VVEPFA Trigger: GGCAAAGGGTTCTACAACCAAAGAAGCCACTGTTTG...AGGAGATCTTGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR CCA 72 bp | ACAGTGCAAGCTGAAGCTATCGCAGTTTATGTCTGCTaGGGTAAAAAGCAACTTCAGGAACAAATTTTGCCT | + |
|
Preference number: 3 (lower is better) Translates to: TVQAEAIAVYVC*GKKQLQEQILP Trigger: AGGCAAAATTTGTTCCTGAAGTTGCTTTTTACCCCAGCAGACATAAACTGCGATAGCTTCAGCTTGCACTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR GCA 90 bp | CTATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGTGGCTTCTTGGGTGACGCACATCTaGTCCACCACGCGCTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: LSQVGGCFPGRHPQTVASWVTHI*STTRSI Trigger: GATGGAGCGCGTGGTGGAGCAGATGTGCGTCACCCA...AGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCACCTGGGATAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | ATTCCACGTGTGGATGCTCTAGCTATCCCAGGTGGGAGGCTGTTTTCCAGGGCGGGTGCCACCCTGAGGTaGGTAACGGTTGCCTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: IPRVDALAIPGGRLFSRAGATLR*VTVASR Trigger: CCTGGAGGCAACCGTTACCCACCTCAGGGTGGCACC...CGCCCTGGAAAACAGCCTCCCACCTGGGATAGCTAGAGCATCCACACGTGGAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR GCA 90 bp | AGAGCAACTGGTCTACTGTACATTTCCCAGGGCCCATCAGTGCCAGGGGTATTAGGGGCTGCCCCCAGGTaGCACCCTGAGGTGGGTAAC | + |
|
Preference number: 4 (lower is better) Translates to: RATGLLYISQGPSVPGVLGAAPR*HPEVGN Trigger: GTTACCCACCTCAGGGTGGCACCTGGGGGCAGCCCC...TAATACCCCTGGCACTGATGGGCCCTGGGAAATGTACAGTAGACCAGTTGCTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | ACAGGAGGACCAAGCTTTTTACAGGGCTGGCTCTCCTCAGAGTCAAGATCTCCTTGGGTACCCCCTCCTTaGCCCCATCCACCGCCATGG | + |
|
Preference number: 4 (lower is better) Translates to: TGGPSFLQGWLSSESRSPWVPPP*PHPPPW Trigger: CCATGGCGGTGGATGGGGCCAAGGAGGGGGTACCCA...AGGAGATCTTGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | TATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGTGGCTTCTTGACTCCTTCTGGTACTaGGTGACGCACATCTGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: YPRWEAVFQGAIPKQWLLDSFWY*VTHICS Trigger: GGAGCAGATGTGCGTCACCCAGTACCAGAAGGAGTC...AAGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCACCTGGGATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | GCTTTGGAATCCTACGGAACTGAGTGCACGCTGAAAGCCCAAGGGTCACACGGTGCCTGGGACTCCTTCTaGTACTGGGTGACGCACATC | + |
|
Preference number: 4 (lower is better) Translates to: ALESYGTECTLKAQGSHGAWDSF*YWVTHI Trigger: GATGTGCGTCACCCAGTACCAGAAGGAGTCCCAGGC...ACCGTGTGACCCTTGGGCTTTCAGCGTGCACTCAGTTCCGTAGGATTCCAAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR TCA 90 bp | TATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGTGGCTTCTTCCCCTGCCACATGCTTaGGGTTGGTTTTTGGTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: YPRWEAVFQGAIPKQWLLPLPHA*GWFLVC Trigger: GCAAACCAAAAACCAACCTCAAGCATGTGGCAGGGG...AAGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCACCTGGGATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | ACAGGAGGACCAAGCTTTTTACAGGGCTGGCTCTCCTCAGAGTCAAGATCTCCTCCACCCTCCAGGCTTTaGCCGCTTTTTGCAGAGGCC | + |
|
Preference number: 4 (lower is better) Translates to: TGGPSFLQGWLSSESRSPPPSRL*PLFAEA Trigger: GGCCTCTGCAAAAAGCGGCCAAAGCCTGGAGGGTGG...AGGAGATCTTGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | ACAGGAGGACCAAGCTTTTTACAGGGCTGGCTCTCCTCAGAGTCAAGATCTCCTTCATGGGCCTGCTCATaGCGCTCCCCAGCATGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: TGGPSFLQGWLSSESRSPSWACS*RSPACS Trigger: GCTACATGCTGGGGAGCGCCATGAGCAGGCCCATGA...AGGAGATCTTGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR TCA 90 bp | CTGAAGCAAAGAGCAACTGGTCTACTGTACATTTCCCAGGGCCCATCAGTGCCATCACATCGGTCTCGGTaGAGTTCTCCCCCTTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: LKQRATGLLYISQGPSVPSHRSR*SSPPWW Trigger: CCACCAAGGGGGAGAACTTCACCGAGACCGATGTGA...TGGCACTGATGGGCCCTGGGAAATGTACAGTAGACCAGTTGCTCTTTGCTTCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR GCA 90 bp | TATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGTGGCTTCTTCGAAGTTGTTCTGGTTaGTGTACTGATCCACTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: YPRWEAVFQGAIPKQWLLRSCSG*CTDPLA Trigger: GGCCAGTGGATCAGTACAGCAACCAGAACAACTTCG...AAGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCACCTGGGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | TGCTCTAGCTATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGGCTGTACTGATCCACTaGCCTGTAGTACACTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: CSSYPRWEAVFQGAIPKQAVLIH*PVVHLV Trigger: AACCAAGTGTACTACAGGCCAGTGGATCAGTACAGC...CTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCACCTGGGATAGCTAGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR GCA 90 bp | CTATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGTGGCTTCTGGTTGGTTTTTGGTTTaGTGGGCTTGTTCCACTGAT | + |
|
Preference number: 4 (lower is better) Translates to: LSQVGGCFPGRHPQTVASGWFLV*WACSTD Trigger: ATCAGTGGAACAAGCCCAGCAAACCAAAAACCAACC...AGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCACCTGGGATAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR GCA 90 bp | GGCCCATCAGTGCCAGGGGTATTAGCCTATGGGGGACACAGAGAAGCAAGAATGGTGGTGACCGTGTGCTaGTTGATGGTGATATTGACG | + |
|
Preference number: 4 (lower is better) Translates to: GPSVPGVLAYGGHREARMVVTVC*LMVILT Trigger: CGTCAATATCACCATCAAGCAGCACACGGTCACCAC...CATTCTTGCTTCTCTGTGTCCCCCATAGGCTAATACCCCTGGCACTGATGGGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | TGCTCTAGCTATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGCTTGAGGTTGGTTTTTaGTTTGCTGGGCTTGTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: CSSYPRWEAVFQGAIPKQLEVGF*FAGLVP Trigger: TGGAACAAGCCCAGCAAACCAAAAACCAACCTCAAG...CTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCACCTGGGATAGCTAGAGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | GGCCCATCAGTGCCAGGGGTATTAGCCTATGGGGGACACAGAGAAGCAAGAATGCAGTCGTTGCCAAAATaGATCATGGGCCTGCTCATG | + |
|
Preference number: 4 (lower is better) Translates to: GPSVPGVLAYGGHREARMQSLPK*IMGLLM Trigger: CATGAGCAGGCCCATGATCCATTTTGGCAACGACTG...CATTCTTGCTTCTCTGTGTCCCCCATAGGCTAATACCCCTGGCACTGATGGGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR GCA 90 bp | ACAGGAGGACCAAGCTTTTTACAGGGCTGGCTCTCCTCAGAGTCAAGATCTCCTGCAGCCCCTGCCACATaGTTGAGGTTGGTTTTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: TGGPSFLQGWLSSESRSPAAPAT*LRLVFG Trigger: ACCAAAAACCAACCTCAAGCATGTGGCAGGGGCTGC...AGGAGATCTTGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | TTAGCACTGGCTGATGACAGACTCCATCAAAGGGACCTGAAGCAAAGAGCAACTTGCCAAAATGGATCATaGGCCTGCTCATGGCGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LALADDRLHQRDLKQRATCQNGS*ACSWRS Trigger: GGAGCGCCATGAGCAGGCCCATGATCCATTTTGGCA...AGTTGCTCTTTGCTTCAGGTCCCTTTGATGGAGTCTGTCATCAGCCAGTGCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CCA 90 bp | CTCCCGTCACAGGAGGACCAAGCTTTTTACAGGGCTGGCTCTCCTCAGAGTCAATGGTTTTTGGTTTGCTaGGCTTGTTCCACTGATTAT | + |
|
Preference number: 4 (lower is better) Translates to: LPSQEDQAFYRAGSPQSQWFLVC*ACSTDY Trigger: ATAATCAGTGGAACAAGCCCAGCAAACCAAAAACCA...TTGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGTGACGGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR GCA 90 bp | TATATTCTTATTGGCCCGGTGTTAGCACTGGCTGATGACAGACTCCATCAAAGGGTGGTGGTGACCGTGTaGTGCTTGATGGTGATATTG | + |
|
Preference number: 4 (lower is better) Translates to: YILIGPVLALADDRLHQRVVVTV*CLMVIL Trigger: CAATATCACCATCAAGCAGCACACGGTCACCACCAC...CCTTTGATGGAGTCTGTCATCAGCCAGTGCTAACACCGGGCCAATAAGAATATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| 3UTR CAA 72 bp | TGTTTTCCAGGGCGCCATCCCCAAACAGTGGCTTCTTaGGTTGTAGAACCCTTTGCCTATGCTAAGTTACAT | + |
|
Preference number: 4 (lower is better) Translates to: CFPGRHPQTVAS*VVEPFAYAKLH Trigger: ATGTAACTTAGCATAGGCAAAGGGTTCTACAACCAAAGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR GCA 90 bp | CTTGTACTCTGGGTACAAGTCAGGGGATACACCAGTATTTATTCACTAGACCAAATATTGACGCAGTCGTaGACGAAGTTGTTCTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: LVLWVQVRGYTSIYSLDQILTQS*TKLFWL Trigger: CAACCAGAACAACTTCGTGCACGACTGCGTCAATAT...TTGGTCTAGTGAATAAATACTGGTGTATCCCCTGACTTGTACCCAGAGTACAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CCA 90 bp | CTGCCCGGGATACCGGCTTCCACCGGTGTTCCACCCTCCAGGCTTTaGCCGCTTTTTGCAGAGGCCGACATCAGTCCACATAGTCACAAA | + |
|
Preference number: 5 (lower is better) Translates to: LPGIPASTGVPPSRL*PLFAEADISPHSHK Trigger: TTTGTGACTATGTGGACTGATGTCGGCCTCTGCAAAAAGCGGCCAAAGCCTGGAGGGTGGAACACCGGTGGAAGCCGGTATCCCGGGCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CAA 90 bp | TATCCCAGGTGGGAGGCTGTTTTCCAGGGCGCCATCCCCAAACAGTGGCTTCTTTCCACCCTCCAGGCTTaGGCCGCTTTTTGCAGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: YPRWEAVFQGAIPKQWLLSTLQA*AAFCRG Trigger: GCCTCTGCAAAAAGCGGCCAAAGCCTGGAGGGTGGA...AAGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCCTCCCACCTGGGATA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CAA 90 bp | GCTTTGGAATCCTACGGAACTGAGTGCACGCTGAAAGCCCAAGGGTCACACGGTGTGAAGTTCTCCCCCTaGGTGGTGGTGGTGACCGTG | + |
|
Preference number: 5 (lower is better) Translates to: ALESYGTECTLKAQGSHGVKFSP*VVVVTV Trigger: CACGGTCACCACCACCACCAAGGGGGAGAACTTCAC...ACCGTGTGACCCTTGGGCTTTCAGCGTGCACTCAGTTCCGTAGGATTCCAAAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS TCA 90 bp | ATCTTCTCCCGTCGTAATAGGCCTGGGACTCCTTCTGGTACTGGGTaGCGCACATCTGCTCCACCACGCGCTCCATCATCTTCACATCGG | + |
|
Preference number: 5 (lower is better) Translates to: IFSRRNRPGTPSGTG*RTSAPPRAPSSSHR Trigger: CCGATGTGAAGATGATGGAGCGCGTGGTGGAGCAGATGTGCGTCACCCAGTACCAGAAGGAGTCCCAGGCCTATTACGACGGGAGAAGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CAA 90 bp | TTAGCACTGGCTGATGACAGACTCCATCAAAGGGACCTGAAGCAAAGAGCAACTATGGGTACCCCCTCCTaGGCCCCATCCACCGCCATG | + |
|
Preference number: 5 (lower is better) Translates to: LALADDRLHQRDLKQRATMGTPS*APSTAM Trigger: CATGGCGGTGGATGGGGCCAAGGAGGGGGTACCCAT...AGTTGCTCTTTGCTTCAGGTCCCTTTGATGGAGTCTGTCATCAGCCAGTGCTAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CAA 90 bp | GCTTTGGAATCCTACGGAACTGAGTGCACGCTGAAAGCCCAAGGGTCACACGGTTGCTTGATGGTGATATaGACGCAGTCGTGCACGAAG | + |
|
Preference number: 5 (lower is better) Translates to: ALESYGTECTLKAQGSHGCLMVI*TQSCTK Trigger: CTTCGTGCACGACTGCGTCAATATCACCATCAAGCA...ACCGTGTGACCCTTGGGCTTTCAGCGTGCACTCAGTTCCGTAGGATTCCAAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CCA 90 bp | GACGCAGTCGTGCACGAAGTTGTTCTGGTTGCTGTACTGATCCACTaGCCTGTAGTACACTTGGTTAGGGTAGCGGTACATGTTTTCACG | + |
|
Preference number: 5 (lower is better) Translates to: DAVVHEVVLVAVLIH*PVVHLVRVAVHVFT Trigger: CGTGAAAACATGTACCGCTACCCTAACCAAGTGTACTACAGGCCAGTGGATCAGTACAGCAACCAGAACAACTTCGTGCACGACTGCGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CAA 90 bp | ACAGGAGGACCAAGCTTTTTACAGGGCTGGCTCTCCTCAGAGTCAAGATCTCCTTGGCCTGTAGTACACTaGGTTAGGGTAGCGGTACAT | + |
|
Preference number: 5 (lower is better) Translates to: TGGPSFLQGWLSSESRSPWPVVH*VRVAVH Trigger: ATGTACCGCTACCCTAACCAAGTGTACTACAGGCCA...AGGAGATCTTGACTCTGAGGAGAGCCAGCCCTGTAAAAAGCTTGGTCCTCCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CAA 90 bp | TTAGCACTGGCTGATGACAGACTCCATCAAAGGGACCTGAAGCAAAGAGCAACTGCCACATGCTTGAGGTaGGTTTTTGGTTTGCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: LALADDRLHQRDLKQRATATCLR*VFGLLG Trigger: GCCCAGCAAACCAAAAACCAACCTCAAGCATGTGGC...AGTTGCTCTTTGCTTCAGGTCCCTTTGATGGAGTCTGTCATCAGCCAGTGCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS-3UTR CAA 90 bp | AACAATGCTAGCAGAATTTCTTTCCCACTTTGGAATGGAGCCTACTTCTCTTATGTGACCGTGTGCTGCTaGATGGTGATATTGACGCAG | + |
|
Preference number: 5 (lower is better) Translates to: NNASRISFPLWNGAYFSYVTVCC*MVILTQ Trigger: CTGCGTCAATATCACCATCAAGCAGCACACGGTCAC...ATAAGAGAAGTAGGCTCCATTCCAAAGTGGGAAAGAAATTCTGCTAGCATTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS GCA 72 bp | GGTCCTCCCAGTCGTTGCCAAAATGGATCATGGGCCTaGTCATGGCGCTCCCCAGCATGTAGCCACCAAGGC | + |
|
Preference number: 6 (lower is better) Translates to: GPPSRCQNGSWA*SWRSPACSHQG Trigger: GCCTTGGTGGCTACATGCTGGGGAGCGCCATGAGCAGGCCCATGATCCATTTTGGCAACGACTGGGAGGACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS GCA 72 bp | GCCTGGGACTCCTTCTGGTACTGGGTGACGCACATCTaGTCCACCACGCGCTCCATCATCTTCACATCGGTC | + |
|
Preference number: 6 (lower is better) Translates to: AWDSFWYWVTHI*STTRSIIFTSV Trigger: GACCGATGTGAAGATGATGGAGCGCGTGGTGGAGCAGATGTGCGTCACCCAGTACCAGAAGGAGTCCCAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CCA 72 bp | AGTAGCGGTCCTCCCAGTCGTTGCCAAAATGGATCATaGGCCTGCTCATGGCGCTCCCCAGCATGTAGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: SSGPPSRCQNGS*ACSWRSPACSH Trigger: GTGGCTACATGCTGGGGAGCGCCATGAGCAGGCCCATGATCCATTTTGGCAACGACTGGGAGGACCGCTACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CAA 72 bp | GATACCGGCTTCCACCGGTGTTCCACCCTCCAGGCTTaGGCCGCTTTTTGCAGAGGCCGACATCAGTCCACA | + |
|
Preference number: 6 (lower is better) Translates to: DTGFHRCSTLQA*AAFCRGRHQST Trigger: TGTGGACTGATGTCGGCCTCTGCAAAAAGCGGCCAAAGCCTGGAGGGTGGAACACCGGTGGAAGCCGGTATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CAA 90 bp | TACCGGCTTCCACCGGTGTTCCACCCTCCAGGCTTTGGCCGCTTTTaGCAGAGGCCGACATCAGTCCACATAGTCACAAAGAGGGCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: YRLPPVFHPPGFGRF*QRPTSVHIVTKRAS Trigger: GCTGGCCCTCTTTGTGACTATGTGGACTGATGTCGGCCTCTGCAAAAAGCGGCCAAAGCCTGGAGGGTGGAACACCGGTGGAAGCCGGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS TCA 72 bp | CGTCGTAATAGGCCTGGGACTCCTTCTGGTACTGGGTaGCGCACATCTGCTCCACCACGCGCTCCATCATCT | + |
|
Preference number: 6 (lower is better) Translates to: RRNRPGTPSGTG*RTSAPPRAPSS Trigger: AGATGATGGAGCGCGTGGTGGAGCAGATGTGCGTCACCCAGTACCAGAAGGAGTCCCAGGCCTATTACGACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CCA 72 bp | ATACCGGCTTCCACCGGTGTTCCACCCTCCAGGCTTTaGCCGCTTTTTGCAGAGGCCGACATCAGTCCACAT | + |
|
Preference number: 6 (lower is better) Translates to: IPASTGVPPSRL*PLFAEADISPH Trigger: ATGTGGACTGATGTCGGCCTCTGCAAAAAGCGGCCAAAGCCTGGAGGGTGGAACACCGGTGGAAGCCGGTAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CAA 72 bp | CCACCGGTGTTCCACCCTCCAGGCTTTGGCCGCTTTTaGCAGAGGCCGACATCAGTCCACATAGTCACAAAG | + |
|
Preference number: 6 (lower is better) Translates to: PPVFHPPGFGRF*QRPTSVHIVTK Trigger: CTTTGTGACTATGTGGACTGATGTCGGCCTCTGCAAAAAGCGGCCAAAGCCTGGAGGGTGGAACACCGGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS GCA 72 bp | ACATGTTTTCACGGTAGTAGCGGTCCTCCCAGTCGTTaGCAAAATGGATCATGGGCCTGCTCATGGCGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: TCFHGSSGPPSR*QNGSWACSWRS Trigger: GGAGCGCCATGAGCAGGCCCATGATCCATTTTGGCAACGACTGGGAGGACCGCTACTACCGTGAAAACATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CAA 90 bp | GAAGTTGTTCTGGTTGCTGTACTGATCCACTGGCCTGTAGTACACTaGGTTAGGGTAGCGGTACATGTTTTCACGGTAGTAGCGGTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: EVVLVAVLIHWPVVH*VRVAVHVFTVVAVL Trigger: GAGGACCGCTACTACCGTGAAAACATGTACCGCTACCCTAACCAAGTGTACTACAGGCCAGTGGATCAGTACAGCAACCAGAACAACTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CCA 72 bp | GTGCACGAAGTTGTTCTGGTTGCTGTACTGATCCACTaGCCTGTAGTACACTTGGTTAGGGTAGCGGTACAT | + |
|
Preference number: 6 (lower is better) Translates to: VHEVVLVAVLIH*PVVHLVRVAVH Trigger: ATGTACCGCTACCCTAACCAAGTGTACTACAGGCCAGTGGATCAGTACAGCAACCAGAACAACTTCGTGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||
| CDS CAA 72 bp | CTGGTTGCTGTACTGATCCACTGGCCTGTAGTACACTaGGTTAGGGTAGCGGTACATGTTTTCACGGTAGTA | + |
|
Preference number: 6 (lower is better) Translates to: LVAVLIHWPVVH*VRVAVHVFTVV Trigger: TACTACCGTGAAAACATGTACCGCTACCCTAACCAAGTGTACTACAGGCCAGTGGATCAGTACAGCAACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091288.13 |
||