Pregenerated sensors for PRMT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000109324Ensembl transcript IDs: ENSMUST00000045325.14, ENSMUST00000107843.11, ENSMUST00000207370.2, ENSMUST00000207522.2, ENSMUST00000207659.2, ENSMUST00000208829.2, ENSMUST00000208938.2, ENSMUST00000209124.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTGGATGTCATGTCCTCAGCGTTGGGCTTCTCACTACTTTCTGCTTaGCCACAGGAAACCCAGAGCACCATCCAGGGAGCAGCCGCCTCG | + |
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Preference number: 1 (lower is better) Translates to: LDVMSSALGFSLLSA*PQETQSTIQGAAAS Trigger: CGAGGCGGCTGCTCCCTGGATGGTGCTCTGGGTTTCCTGTGGCCAAGCAGAAAGTAGTGAGAAGCCCAACGCTGAGGACATGACATCCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207522.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGGGCTCAGGGGTCTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGCAGCCTGGTCTACAGTaGGTTCCAGGGCAGCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: QGLRGLTRTEDSSTSAPKQPGLQ*VPGQPG Trigger: CCCTGGCTGCCCTGGAACTCACTGTAGACCAGGCTG...CTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAGACCCCTGAGCCCCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR-3UTR GCA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCCCCCGAGCCCCCTTCTaGAGGAGGGCCAGCCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSPRAPF*RRASLA Trigger: TGCCAGGCTGGCCCTCCTGCAGAAGGGGGCTCGGGG...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR CAA 90 bp | TTTGGATGTCATGTCCTCAGCGTTGGGCTTCTCACTACTTTCTGCTaGGCCACAGGAAACCCAGAGCACCATCCAGGGAGCAGCCGCCTC | + |
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Preference number: 2 (lower is better) Translates to: FGCHVLSVGLLTTFC*ATGNPEHHPGSSRL Trigger: GAGGCGGCTGCTCCCTGGATGGTGCTCTGGGTTTCCTGTGGCCAAGCAGAAAGTAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207522.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGGGCTCAGGGGTCTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGGTCTaGGAATCCAGCCATGATGGA | + |
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Preference number: 2 (lower is better) Translates to: QGLRGLTRTEDSSTSAPKNLRKV*ESSHDG Trigger: TCCATCATGGCTGGATTCCCAGACCTTCCTGAGATT...CTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAGACCCCTGAGCCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR-3UTR TCA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCAGGCAGGCAGATTTCTaGGTTCCAGGTTCCAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSRQADF*VPGSRP Trigger: TGGCCTGGAACCTGGAACTCAGAAATCTGCCTGCCT...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR-3UTR CCA 90 bp | ACGCAAACAAACACAAATGGCCCAGTACCACGGTGCAGGCCTTTAGTCACAGTAAATCTCAGGAAGAGCTaGGCGTGGTGGCGCACGCCT | + |
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Preference number: 2 (lower is better) Translates to: TQTNTNGPVPRCRPLVTVNLRKS*AWWRTP Trigger: AGGCGTGCGCCACCACGCCCAGCTCTTCCTGAGATT...TACTGTGACTAAAGGCCTGCACCGTGGTACTGGGCCATTTGTGTTTGTTTGCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGGGCTCAGGGGTCTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGCAGCTGAGGATTTATTaGCATAAACGCAACCATATA | + |
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Preference number: 2 (lower is better) Translates to: QGLRGLTRTEDSSTSAPKQLRIY*HKRNHI Trigger: TATATGGTTGCGTTTATGCCAATAAATCCTCAGCTG...CTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAGACCCCTGAGCCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR-3UTR TCA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCAGTGGCATGGTCAGCTaGGGATTTATTGGCATAAAC | + |
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Preference number: 2 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSSGMVS*GFIGIN Trigger: GTTTATGCCAATAAATCCTCAGCTGACCATGCCACT...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR-3UTR CCA 90 bp | ACGCAAACAAACACAAATGGCCCAGTACCACGGTGCAGGCCTTTAGTCACAGTAGGGCGAGAAGTGGCATaGTCAGCTGAGGATTTATTG | + |
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Preference number: 2 (lower is better) Translates to: TQTNTNGPVPRCRPLVTVGREVA*SAEDLL Trigger: CAATAAATCCTCAGCTGACCATGCCACTTCTCGCCC...TACTGTGACTAAAGGCCTGCACCGTGGTACTGGGCCATTTGTGTTTGTTTGCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR GCA 72 bp | GTCACAGTACTCAGAAGGCAGAGGCAGGTGAACCTCTaGTGCAGGTTAGCATGGATCATAGCGAGCTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: VTVLRRQRQVNL*CRLAWIIASSR Trigger: CCTGGAGCTCGCTATGATCCATGCTAACCTGCAGCAGAGGTTCACCTGCCTCTGCCTTCTGAGTACTGTGAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR CCA 72 bp | ATGTCCTCAGCGTTGGGCTTCTCACTACTTTCTGCTTaGCCACAGGAAACCCAGAGCACCATCCAGGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: MSSALGFSLLSA*PQETQSTIQGA Trigger: TGCTCCCTGGATGGTGCTCTGGGTTTCCTGTGGCCAAGCAGAAAGTAGTGAGAAGCCCAACGCTGAGGACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207522.2 |
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| CDS-3UTR CCA 90 bp | CCATCCAGGGAGCAGCCGCCTCGCCTACCATCTCTCCAGGCTCTATGGCCTGTCTCTTCAAGAGGCGGCTaGAGGCTCATCCCATTAGCC | + |
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Preference number: 4 (lower is better) Translates to: PSREQPPRLPSLQALWPVSSRGG*RLIPLA Trigger: GGCTAATGGGATGAGCCTCCAGCCGCCTCTTGAAGA...GACAGGCCATAGAGCCTGGAGAGATGGTAGGCGAGGCGGCTGCTCCCTGGATGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207522.2 |
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| CDS-3UTR TCA 90 bp | GCACCATCCAGGGAGCAGCCGCCTCGCCTACCATCTCTCCAGGCTCTATGGCCTCTACAAAATTCTCCATaGTGCAGTTCGCGGCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: APSREQPPRLPSLQALWPLQNSP*CSSRPR Trigger: CCGAGGCCGCGAACTGCATCATGGAGAATTTTGTAG...AGGCCATAGAGCCTGGAGAGATGGTAGGCGAGGCGGCTGCTCCCTGGATGGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207522.2 |
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| CDS-3UTR GCA 90 bp | CAGGGGCTCAGGGGTCTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGGCATCTCCTCGTGGATaGCAAAGTGGGCATAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: QGLRGLTRTEDSSTSAPKASPRG*QSGHRS Trigger: ACTCCTATGCCCACTTTGGCATCCACGAGGAGATGC...CTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAGACCCCTGAGCCCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CCA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCACGGGGACTCAGGACTaGTGGAGAAGCCGGTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSTGTQD*WRSRSS Trigger: AGAGGACCGGCTTCTCCACCAGTCCTGAGTCCCCGT...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR GCA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCGCATTGGTGACCAGCTaGTTTGGGTCCACCACGTCC | + |
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Preference number: 4 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSALVTS*FGSTTS Trigger: GGACGTGGTGGACCCAAAGCAGCTGGTCACCAATGC...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR TCA 90 bp | ACGCAAACAAACACAAATGGCCCAGTACCACGGTGCAGGCCTTTAGTCACAGTACACAGGAAACCTCCATaGTGCAGTTCGCGGCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: TQTNTNGPVPRCRPLVTVHRKPP*CSSRPR Trigger: CCGAGGCCGCGAACTGCATCATGGAGGTTTCCTGTG...TACTGTGACTAAAGGCCTGCACCGTGGTACTGGGCCATTTGTGTTTGTTTGCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CCA 90 bp | CAGGGGCTCAGGGGTCTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAGTCACGATTGTTTTTaGCATTGGGCCTCATTCCAA | + |
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Preference number: 4 (lower is better) Translates to: QGLRGLTRTEDSSTSAPKSHDCF*HWASFQ Trigger: TTGGAATGAGGCCCAATGCCAAAAACAATCGTGACT...CTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAGACCCCTGAGCCCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CCA 90 bp | CAGGGGCTCAGGGGTCTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGCAAAGTAGTAGTCTTTaGATGTCATGTCCTCAGCGT | + |
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Preference number: 4 (lower is better) Translates to: QGLRGLTRTEDSSTSAPKQSSSL*MSCPQR Trigger: ACGCTGAGGACATGACATCCAAAGACTACTACTTTG...CTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAGACCCCTGAGCCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| 3UTR CAA 72 bp | AGCTGCTTTGGGTCCACCACGTCCACCAGGGGCTCCTaGATGGCCACGTCTTTAATGCAGGACATATCAAAG | + |
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Preference number: 4 (lower is better) Translates to: SCFGSTTSTRGS*MATSLMQDISK Trigger: CTTTGATATGTCCTGCATTAAAGACGTGGCCATCAAGGAGCCCCTGGTGGACGTGGTGGACCCAAAGCAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208938.2 |
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| CDS-3UTR TCA 90 bp | ACGCAAACAAACACAAATGGCCCAGTACCACGGTGCAGGCCTTTAGTCACAGTAGAGAGCTCACACAGCTaGCCCTTGAAGTCCAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: TQTNTNGPVPRCRPLVTVESSHS*PLKSRS Trigger: CGACCTGGACTTCAAGGGTCAGCTGTGTGAGCTCTC...TACTGTGACTAAAGGCCTGCACCGTGGTACTGGGCCATTTGTGTTTGTTTGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR TCA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCAAGAGATGCCGATTGTaGAACATGGAGTTGCGGTAT | + |
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Preference number: 4 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSKRCRL*NMELRY Trigger: ATACCGCAACTCCATGTTTCACAATCGGCATCTCTT...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR TCA 90 bp | TATCAAAGCCATACACGTTCTCCCACCAGTGGATCTTGTAGTCTTTATATTGTCCCCGGTCTGGGAAGATaGGGCCATCGGGTGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: YQSHTRSPTSGSCSLYIVPGLGR*GHRVPW Trigger: CCATGGCACCCGATGGCCTCATCTTCCCAGACCGGG...GACAATATAAAGACTACAAGATCCACTGGTGGGAGAACGTGTATGGCTTTGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208938.2 |
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| CDS-3UTR CCA 90 bp | ACGCAAACAAACACAAATGGCCCAGTACCACGGTGCAGGCCTTTAGTCACAGTAGCATCCGGTAGTCGGTaGAACAAGAGAGCTCACACA | + |
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Preference number: 4 (lower is better) Translates to: TQTNTNGPVPRCRPLVTVASGSR*NKRAHT Trigger: TGTGTGAGCTCTCTTGTTCCACCGACTACCGGATGC...TACTGTGACTAAAGGCCTGCACCGTGGTACTGGGCCATTTGTGTTTGTTTGCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR GCA 90 bp | ACGCAAACAAACACAAATGGCCCAGTACCACGGTGCAGGCCTTTAGTCACAGTACTTCTCACTACTTTCTaGTTGGCCACAGGAAACCTC | + |
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Preference number: 4 (lower is better) Translates to: TQTNTNGPVPRCRPLVTVLLTTF*LATGNL Trigger: GAGGTTTCCTGTGGCCAAGCAGAAAGTAGTGAGAAG...TACTGTGACTAAAGGCCTGCACCGTGGTACTGGGCCATTTGTGTTTGTTTGCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CCA 90 bp | ACGCAAACAAACACAAATGGCCCAGTACCACGGTGCAGGCCTTTAGTCACAGTATCACTACTTTCTGCTTaGCCACAGGAAACCTCCATG | + |
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Preference number: 4 (lower is better) Translates to: TQTNTNGPVPRCRPLVTVSLLSA*PQETSM Trigger: CATGGAGGTTTCCTGTGGCCAAGCAGAAAGTAGTGA...TACTGTGACTAAAGGCCTGCACCGTGGTACTGGGCCATTTGTGTTTGTTTGCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CCA 90 bp | ACGCAAACAAACACAAATGGCCCAGTACCACGGTGCAGGCCTTTAGTCACAGTAATGATGGTCACCACATaGTCTAACTTGTTGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TQTNTNGPVPRCRPLVTVMMVTT*SNLLAL Trigger: CAAAGCCAACAAGTTAGACCATGTGGTGACCATCAT...TACTGTGACTAAAGGCCTGCACCGTGGTACTGGGCCATTTGTGTTTGTTTGCGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR GCA 90 bp | TATCAAAGCCATACACGTTCTCCCACCAGTGGATCTTGTAGTCTTTATATTGTCGCATCTCCTCGTGGATaGCAAAGTGGGCATAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: YQSHTRSPTSGSCSLYIVASPRG*QSGHRS Trigger: ACTCCTATGCCCACTTTGGCATCCACGAGGAGATGC...GACAATATAAAGACTACAAGATCCACTGGTGGGAGAACGTGTATGGCTTTGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208938.2 |
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| CDS-3UTR CCA 90 bp | TATCAAAGCCATACACGTTCTCCCACCAGTGGATCTTGTAGTCTTTATATTGTCGGCCATCGGGTGCCATaGTCTAACTTGTTGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: YQSHTRSPTSGSCSLYIVGHRVP*SNLLAL Trigger: CAAAGCCAACAAGTTAGACCATGGCACCCGATGGCC...GACAATATAAAGACTACAAGATCCACTGGTGGGAGAACGTGTATGGCTTTGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208938.2 |
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| CDS-3UTR TCA 90 bp | TATCAAAGCCATACACGTTCTCCCACCAGTGGATCTTGTAGTCTTTATATTGTCAAGAGATGCCGATTGTaGAACATGGAGTTGCGGTAT | + |
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Preference number: 4 (lower is better) Translates to: YQSHTRSPTSGSCSLYIVKRCRL*NMELRY Trigger: ATACCGCAACTCCATGTTTCACAATCGGCATCTCTT...GACAATATAAAGACTACAAGATCCACTGGTGGGAGAACGTGTATGGCTTTGATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208938.2 |
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| CDS-3UTR CCA 90 bp | TATCAAAGCCATACACGTTCTCCCACCAGTGGATCTTGTAGTCTTTATATTGTCCAAAGTAGTAGTCTTTaGATGTCATGTCCTCAGCGT | + |
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Preference number: 4 (lower is better) Translates to: YQSHTRSPTSGSCSLYIVQSSSL*MSCPQR Trigger: ACGCTGAGGACATGACATCCAAAGACTACTACTTTG...GACAATATAAAGACTACAAGATCCACTGGTGGGAGAACGTGTATGGCTTTGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208938.2 |
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| CDS CCA 90 bp | ACAGCTGGGGAGGGAGGGAGAGAGGGCAGAGCCAGGGCAGACACATaGAAGGGCAGGGGAGGAGGGTTCTTCAAGAGGCGGCTGGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: TAGEGGREGRARADT*KGRGGGFFKRRLEA Trigger: AGCCTCCAGCCGCCTCTTGAAGAACCCTCCTCCCCTGCCCTTCCATGTGTCTGCCCTGGCTCTGCCCTCTCTCCCTCCCTCCCCAGCTGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207522.2 |
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| CDS-3UTR CAA 90 bp | CAGGGGCTCAGGGGTCTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGGAGAAGCCGGTCCTCTaGTGGCATCGGGTGAACTCG | + |
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Preference number: 5 (lower is better) Translates to: QGLRGLTRTEDSSTSAPKEKPVL*WHRVNS Trigger: CGAGTTCACCCGATGCCACAAGAGGACCGGCTTCTC...CTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAGACCCCTGAGCCCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CAA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCTCCACCAGGGGCTCCTaGATGGCCACGTCTTTAATG | + |
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Preference number: 5 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSSTRGS*MATSLM Trigger: CATTAAAGACGTGGCCATCAAGGAGCCCCTGGTGGA...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CAA 90 bp | CAGGGGCTCAGGGGTCTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGCTTGTAGTCTTTATATaGTCGGTCCTCAATGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: QGLRGLTRTEDSSTSAPKLVVFI*SVLNGC Trigger: ACAGCCATTGAGGACCGACAATATAAAGACTACAAG...CTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAGACCCCTGAGCCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CAA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCGTCATGTCCTCAGCGTaGGGCTTCTCACTACTTTCT | + |
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Preference number: 5 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSVMSSA*GFSLLS Trigger: AGAAAGTAGTGAGAAGCCCAACGCTGAGGACATGAC...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CAA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCCGATTGTTTTTGGCATaGGGCCTCATTCCAATGGTG | + |
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Preference number: 5 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSRLFLA*GLIPMV Trigger: CACCATTGGAATGAGGCCCAATGCCAAAAACAATCG...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS-3UTR CAA 90 bp | CTGACCCGCACTGAGGACTCCTCAACCTCTGCTCCAAAGAATCTCAGGAAGAGCAAGTCCAAGTCACGATaGTTTTTGGCATTGGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: LTRTEDSSTSAPKNLRKSKSKSR*FLALGL Trigger: GAGGCCCAATGCCAAAAACAATCGTGACTTGGACTT...GCTCTTCCTGAGATTCTTTGGAGCAGAGGTTGAGGAGTCCTCAGTGCGGGTCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000207370.2 |
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| CDS CCA 90 bp | TCACTACTTTCTGCTTGGCCACAGGAAACTTCTTCAAGAGGCGGCTaGAGGCTCATCCCATTAGCCAAGGTGGCTACAAAATTCTCCATG | + |
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Preference number: 5 (lower is better) Translates to: SLLSAWPQETSSRGG*RLIPLAKVATKFSM Trigger: CATGGAGAATTTTGTAGCCACCTTGGCTAATGGGATGAGCCTCCAGCCGCCTCTTGAAGAAGTTTCCTGTGGCCAAGCAGAAAGTAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107843.11 |
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| CDS CCA 72 bp | GAGGGAGGGAGAGAGGGCAGAGCCAGGGCAGACACATaGAAGGGCAGGGGAGGAGGGTTCTTCAAGAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: EGGREGRARADT*KGRGGGFFKRR Trigger: CCGCCTCTTGAAGAACCCTCCTCCCCTGCCCTTCCATGTGTCTGCCCTGGCTCTGCCCTCTCTCCCTCCCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207522.2 |
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| CDS CCA 72 bp | GGAAGGGCAGGGGAGGAGGGTTCTTCAAGAGGCGGCTaGAGGCTCATCCCATTAGCCAAGGTGGCTACAAAA | + |
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Preference number: 6 (lower is better) Translates to: GRAGEEGSSRGG*RLIPLAKVATK Trigger: TTTTGTAGCCACCTTGGCTAATGGGATGAGCCTCCAGCCGCCTCTTGAAGAACCCTCCTCCCCTGCCCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207522.2 |
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| CDS CCA 72 bp | ATGTCCTCAGCGTTGGGCTTCTCACTACTTTCTGCTTaGCCACAGGAAACTTCTTCAAGAGGCGGCTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: MSSALGFSLLSA*PQETSSRGGWR Trigger: CCTCCAGCCGCCTCTTGAAGAAGTTTCCTGTGGCCAAGCAGAAAGTAGTGAGAAGCCCAACGCTGAGGACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107843.11 |
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| CDS CCA 72 bp | TCTGCTTGGCCACAGGAAACTTCTTCAAGAGGCGGCTaGAGGCTCATCCCATTAGCCAAGGTGGCTACAAAA | + |
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Preference number: 6 (lower is better) Translates to: SAWPQETSSRGG*RLIPLAKVATK Trigger: TTTTGTAGCCACCTTGGCTAATGGGATGAGCCTCCAGCCGCCTCTTGAAGAAGTTTCCTGTGGCCAAGCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107843.11 |
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| CDS CAA 72 bp | TTGAAGTCCAGGTCGATGGTAAAGTCCAAGTCACGATaGTTTTTGGCATTGGGCCTCATTCCAATGGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: LKSRSMVKSKSR*FLALGLIPMVP Trigger: TGGCACCATTGGAATGAGGCCCAATGCCAAAAACAATCGTGACTTGGACTTTACCATCGACCTGGACTTCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000045325.14 ENSMUST00000107843.11 ENSMUST00000207370.2 ENSMUST00000207659.2 ENSMUST00000208829.2 ENSMUST00000209124.2 |
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