Pregenerated sensors for PRM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050058Ensembl transcript IDs: ENSMUST00000050864.7
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GGAGACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTaGCAATGGGCACCCATTGCCAGGCAGGCCTTGTGG | + |
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Preference number: 3 (lower is better) Translates to: GDSLFFSECPLA*QWAPIARQALW Trigger: CCACAAGGCCTGCCTGGCAATGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| 3UTR CCA 72 bp | TCCATGGAGACTCTTTATTCTTTTCTGAATGTCCTCTaGCGTGGCAATGGGCACCCATTGCCAGGCAGGCCT | + |
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Preference number: 3 (lower is better) Translates to: SMETLYSFLNVL*RGNGHPLPGRP Trigger: AGGCCTGCCTGGCAATGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTCTCCATGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR CCA 90 bp | GGAGACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACCCATTGGCTCGGGGCTTGGCTaGGCCTCCCCATCCTCGGCG | + |
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Preference number: 4 (lower is better) Translates to: GDSLFFSECPLAWQWAPIGSGLG*ASPSSA Trigger: CGCCGAGGATGGGGAGGCCCAGCCAAGCCCCGAGCC...AATGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR GCA 90 bp | TCTGAATGTCCTCTGGCGTGGCAATGGGCACCCATTGCCAGGCAGGCCTTGTGGCCCTTCACCGGGATTTaGTCCTCTTCCTCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SECPLAWQWAPIARQALWPFTGI*SSSSSS Trigger: AGAAGAAGAGGAAGAGGAGCAAATCCCGGTGAAGGG...CCACAAGGCCTGCCTGGCAATGGGTGCCCATTGCCACGCCAGAGGACATTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR TCA 90 bp | GGAGACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACCCATTGGCCATGGCCAGTGCTaGGCTTGGCACAGCGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: GDSLFFSECPLAWQWAPIGHGQC*AWHSGN Trigger: GTTCCCGCTGTGCCAAGCTCAGCACTGGCCATGGCC...AATGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR TCA 90 bp | GAGACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACCCATTGTCGTGGCCACGGCTGTaGCCAGTGTTCTGGGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: ETLYSFLNVLWRGNGHPLSWPRL*PVFWAG Trigger: CCCAGCCCAGAACACTGGTCACAGCCGTGGCCACGA...CAATGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR CCA 90 bp | ATGGAGACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACCCAAGGAGTGTGTCTGCTTaGGCTCGGGGCTTGGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: METLYSFLNVLWRGNGHPRSVSA*ARGLAG Trigger: CCCAGCCAAGCCCCGAGCCCAAGCAGACACACTCCT...TGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTCTCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR CCA 90 bp | ACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACCCATTGCCATTCTGGGCTGGGCCATaGCCAGTGCTGAGCTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TLYSFLNVLWRGNGHPLPFWAGP*PVLSLA Trigger: TGCCAAGCTCAGCACTGGCCATGGCCCAGCCCAGAA...TGGCAATGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR TCA 90 bp | TCCATGGAGACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACAGGGAAAAGTTGTCTTaGCTCACACAGGCCACGAGC | + |
|
Preference number: 4 (lower is better) Translates to: SMETLYSFLNVLWRGNGHREKLS*LTQATS Trigger: GCTCGTGGCCTGTGTGAGTCAAGACAACTTTTCCCT...GTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTCTCCATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS CCA 90 bp | ACAGGGAAAAGTTGTCTTGACTCACACAGGCCACGAGCTTCTTCATaGAGGACTCGTGGCCACGGCTGTGACCAGTGTTCTGGGCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: TGKSCLDSHRPRASS*RTRGHGCDQCSGLG Trigger: GCCCAGCCCAGAACACTGGTCACAGCCGTGGCCACGAGTCCTCCATGAAGAAGCTCGTGGCCTGTGTGAGTCAAGACAACTTTTCCCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS GCA 90 bp | TGCTTTTCGGGCTCCAGCAGCAGCAGCTTGCCCTTCACCGGGATTTaGTCCTCTTCCTCTTCTTCTTCTTCCTCCTCCTCCTCTTCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: CFSGSSSSSLPFTGI*SSSSSSSSSSSSSS Trigger: CGAGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAGCAAATCCCGGTGAAGGGCAAGCTGCTGCTGCTGGAGCCCGAAAAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR CAA 90 bp | GAGACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACCCATTGCAGGAGTGTGTCTGCTaGGGCTCGGGGCTTGGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: ETLYSFLNVLWRGNGHPLQECVC*GSGLGW Trigger: CCAGCCAAGCCCCGAGCCCAAGCAGACACACTCCTG...CAATGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR CAA 90 bp | CATGGAGACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACCCTCCAGCAGCAGCAGCTaGCCCTTCACCGGGATTTGC | + |
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Preference number: 5 (lower is better) Translates to: HGDSLFFSECPLAWQWAPSSSSS*PFTGIC Trigger: GCAAATCCCGGTGAAGGGCAAGCTGCTGCTGCTGGA...GGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTCTCCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR CAA 90 bp | GACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACCCATTGCCGCCCTTCACCGGGATTaGCTCCTCTTCCTCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: DSLFFSECPLAWQWAPIAALHRD*LLFLFF Trigger: GAAGAAGAGGAAGAGGAGCAAATCCCGGTGAAGGGC...GGCAATGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS-3UTR CAA 90 bp | GACTCTTTATTCTTTTCTGAATGTCCTCTGGCGTGGCAATGGGCACCCATTGCCCAGGGAAAAGTTGTCTaGACTCACACAGGCCACGAG | + |
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Preference number: 5 (lower is better) Translates to: DSLFFSECPLAWQWAPIAQGKVV*THTGHE Trigger: CTCGTGGCCTGTGTGAGTCAAGACAACTTTTCCCTG...GGCAATGGGTGCCCATTGCCACGCCAGAGGACATTCAGAAAAGAATAAAGAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS CCA 72 bp | GGACTCGTGGCCACGGCTGTGACCAGTGTTCTGGGCTaGGCCATGGCCAGTGCTGAGCTTGGCACAGCGGGA | + |
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Preference number: 6 (lower is better) Translates to: GLVATAVTSVLG*AMASAELGTAG Trigger: TCCCGCTGTGCCAAGCTCAGCACTGGCCATGGCCCAGCCCAGAACACTGGTCACAGCCGTGGCCACGAGTCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS TCA 72 bp | ACGAGCTTCTTCATGGAGGACTCGTGGCCACGGCTGTaGCCAGTGTTCTGGGCTGGGCCATGGCCAGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: TSFFMEDSWPRL*PVFWAGPWPVL Trigger: CAGCACTGGCCATGGCCCAGCCCAGAACACTGGTCACAGCCGTGGCCACGAGTCCTCCATGAAGAAGCTCGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS GCA 72 bp | GGCTCCAGCAGCAGCAGCTTGCCCTTCACCGGGATTTaGTCCTCTTCCTCTTCTTCTTCTTCCTCCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: GSSSSSLPFTGI*SSSSSSSSSSS Trigger: GGAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAGCAAATCCCGGTGAAGGGCAAGCTGCTGCTGCTGGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS CAA 72 bp | GGGCTCCAGCAGCAGCAGCTTGCCCTTCACCGGGATTaGCTCCTCTTCCTCTTCTTCTTCTTCCTCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: GLQQQQLALHRD*LLFLFFFFLLL Trigger: GAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAGCAAATCCCGGTGAAGGGCAAGCTGCTGCTGCTGGAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS CAA 72 bp | GCGCTCTCTTGCTTTTCGGGCTCCAGCAGCAGCAGCTaGCCCTTCACCGGGATTTGCTCCTCTTCCTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: ALSCFSGSSSSS*PFTGICSSSSS Trigger: AGAAGAGGAAGAGGAGCAAATCCCGGTGAAGGGCAAGCTGCTGCTGCTGGAGCCCGAAAAGCAAGAGAGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS CAA 90 bp | TTGCTTTTCGGGCTCCAGCAGCAGCAGCTTGCCCTTCACCGGGATTaGCTCCTCTTCCTCTTCTTCTTCTTCCTCCTCCTCCTCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: LLFGLQQQQLALHRD*LLFLFFFFLLLLFL Trigger: GAGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAGCAAATCCCGGTGAAGGGCAAGCTGCTGCTGCTGGAGCCCGAAAAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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| CDS CCA 72 bp | AGTTGTCTTGACTCACACAGGCCACGAGCTTCTTCATaGAGGACTCGTGGCCACGGCTGTGACCAGTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: SCLDSHRPRASS*RTRGHGCDQCS Trigger: AGAACACTGGTCACAGCCGTGGCCACGAGTCCTCCATGAAGAAGCTCGTGGCCTGTGTGAGTCAAGACAACT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050864.7 |
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