RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038015

Ensembl transcript IDs: ENSMUST00000037996.7, ENSMUST00000189593.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTCCTTGGCAGCTCAGGGCTCAGACATCGACATGGAATGGTGGTGTaGCCTCACATGATGTTGCTTGGGCAGGTGACTATTCCTTGGGCA +
Preference number: 1 (lower is better)
Translates to: LLGSSGLRHRHGMVV*PHMMLLGQVTIPWA
Trigger: TGCCCAAGGAATAGTCACCTGCCCAAGCAACATCATGTGAGGCCACACCACCATTCCATGTCGATGTCTGAGCCCTGAGCTGCCAAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
3UTR-3UTR CCA 90 bp CTCCTTGGCAGCTCAGGGCTCAGACATCGACATGGAATGGTGGTGTGGCCTCACCAGGTGACTATTCCTTaGGCAAGTGACTTCCTTGGC +
Preference number: 2 (lower is better)
Translates to: LLGSSGLRHRHGMVVWPHQVTIP*ASDFLG
Trigger: GCCAAGGAAGTCACTTGCCCAAGGAATAGTCACCTG...GTGAGGCCACACCACCATTCCATGTCGATGTCTGAGCCCTGAGCTGCCAAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
3UTR TCA 72 bp GATGTTGCTTGGGCAGGTGACTATTCCTTGGGCAAGTaGCTTCCTTGGCTCCAGGCAGAATGGACAGGCCTG +
Preference number: 3 (lower is better)
Translates to: DVAWAGDYSLGK*LPWLQAEWTGL
Trigger: CAGGCCTGTCCATTCTGCCTGGAGCCAAGGAAGTCACTTGCCCAAGGAATAGTCACCTGCCCAAGCAACATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
3UTR-3UTR CAA 90 bp TGTCAAGCTTTATTTGGCAGGTGGCTTTGCTCAGTACTCAGATCTCGTGGCTCCGGGCAAGTGACTTCCTaGGCTCCAGGCAGAATGGAC +
Preference number: 3 (lower is better)
Translates to: CQALFGRWLCSVLRSRGSGQVTS*APGRMD
Trigger: GTCCATTCTGCCTGGAGCCAAGGAAGTCACTTGCCC...GGAGCCACGAGATCTGAGTACTGAGCAAAGCCACCTGCCAAATAAAGCTTGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
3UTR CCA 72 bp AGCTCAGGGCTCAGACATCGACATGGAATGGTGGTGTaGCCTCACATGATGTTGCTTGGGCAGGTGACTATT +
Preference number: 3 (lower is better)
Translates to: SSGLRHRHGMVV*PHMMLLGQVTI
Trigger: AATAGTCACCTGCCCAAGCAACATCATGTGAGGCCACACCACCATTCCATGTCGATGTCTGAGCCCTGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
CDS-3UTR GCA 90 bp TGGCTTTGCTCAGTACTCAGATCTCGTGGCTCCTTGGCAGCTCAGGGCTCAGACCTCAGCCCTTGCCCCTaGCCCTGCTCCTCGCGTTCA +
Preference number: 4 (lower is better)
Translates to: WLCSVLRSRGSLAAQGSDLSPCP*PCSSRS
Trigger: TGAACGCGAGGAGCAGGGGCAGGGGCAAGGGCTGAG...GTCTGAGCCCTGAGCTGCCAAGGAGCCACGAGATCTGAGTACTGAGCAAAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
CDS-3UTR CCA 90 bp TGGCTTTGCTCAGTACTCAGATCTCGTGGCTCCTTGGCAGCTCAGGGCTCAGACGGTGCGGACCCTCACTaGGGCTCCTCATTCGGTAGC +
Preference number: 4 (lower is better)
Translates to: WLCSVLRSRGSLAAQGSDGADPH*GSSFGS
Trigger: GCTACCGAATGAGGAGCCCCAGTGAGGGTCCGCACC...GTCTGAGCCCTGAGCTGCCAAGGAGCCACGAGATCTGAGTACTGAGCAAAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
CDS-3UTR CCA 90 bp CTCCTTGGCAGCTCAGGGCTCAGACATCGACATGGAATGGTGGTGTGGCCTCACCTGTGTCTGTGGTGGTaGTGGCCCCTGTGTGTCCTC +
Preference number: 4 (lower is better)
Translates to: LLGSSGLRHRHGMVVWPHLCLWW*WPLCVL
Trigger: GAGGACACACAGGGGCCACCACCACCACAGACACAG...GTGAGGCCACACCACCATTCCATGTCGATGTCTGAGCCCTGAGCTGCCAAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
CDS-3UTR GCA 90 bp TGGAATGGTGGTGTGGCCTCACATGATGTTGCTTGGGCAGGTGACTATTCCTTGTGTCCAGGCCCCTGGTaGGGACCCTCACTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: WNGGVASHDVAWAGDYSLCPGPW*GPSLGL
Trigger: GAGCCCCAGTGAGGGTCCGCACCAGGGGCCTGGACA...CAAGGAATAGTCACCTGCCCAAGCAACATCATGTGAGGCCACACCACCATTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
CDS-3UTR GCA 90 bp ACATGGAATGGTGGTGTGGCCTCACATGATGTTGCTTGGGCAGGTGACTATTCCTCCTTCGGGATCTTCTaGAGCCTCTGCGATGCCGCC +
Preference number: 4 (lower is better)
Translates to: TWNGGVASHDVAWAGDYSSFGIF*SLCDAA
Trigger: GGCGGCATCGCAGAGGCTGCAGAAGATCCCGAAGGA...GGAATAGTCACCTGCCCAAGCAACATCATGTGAGGCCACACCACCATTCCATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
CDS-3UTR TCA 90 bp CGTGTCAAGCTTTATTTGGCAGGTGGCTTTGCTCAGTACTCAGATCTCGTGGCTCCTCCGCCTTCTGCATaGCCGACGCCTCTTGTGGAT +
Preference number: 4 (lower is better)
Translates to: RVKLYLAGGFAQYSDLVAPPPSA*PTPLVD
Trigger: ATCCACAAGAGGCGTCGGTCATGCAGAAGGCGGAGG...AGCCACGAGATCTGAGTACTGAGCAAAGCCACCTGCCAAATAAAGCTTGACACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
CDS-3UTR GCA 90 bp ACATCGACATGGAATGGTGGTGTGGCCTCACATGATGTTGCTTGGGCAGGTGACTACATTTCCTGCACCTaGATCTCCTCCTCCTTCGGG +
Preference number: 4 (lower is better)
Translates to: TSTWNGGVASHDVAWAGDYISCT*ISSSFG
Trigger: CCCGAAGGAGGAGGAGATGCAGGTGCAGGAAATGTA...GTCACCTGCCCAAGCAACATCATGTGAGGCCACACCACCATTCCATGTCGATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
CDS-3UTR GCA 90 bp GTCAAGCTTTATTTGGCAGGTGGCTTTGCTCAGTACTCAGATCTCGTGGCTCCTGCCTCCTACATTTCCTaGACCTGCATCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: VKLYLAGGFAQYSDLVAPASYIS*TCISSS
Trigger: GGAGGAGGAGATGCAGGTGCAGGAAATGTAGGAGGC...AGGAGCCACGAGATCTGAGTACTGAGCAAAGCCACCTGCCAAATAAAGCTTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037996.7
CDS CCA 90 bp CGGCAGGAGTGTCTCCTCCGCCTTCTGCATGACCGACGCCTCTTGTaGATCCTATGTAGCCTCTTACGAGAGCAGCGCCTGTGTCTGTGG +
Preference number: 5 (lower is better)
Translates to: RQECLLRLLHDRRLL*ILCSLLREQRLCLW
Trigger: CCACAGACACAGGCGCTGCTCTCGTAAGAGGCTACATAGGATCCACAAGAGGCGTCGGTCATGCAGAAGGCGGAGGAGACACTCCTGCCG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037996.7
ENSMUST00000189593.2
CDS GCA 72 bp CTCCTCCTCCTTCGGGATCTTCTGCAGCCTCTGCGATaGCGCCTCCTGTGGCGGCAGGAGTGTCTCCTCCGC +
Preference number: 6 (lower is better)
Translates to: LLLLRDLLQPLR*RLLWRQECLLR
Trigger: GCGGAGGAGACACTCCTGCCGCCACAGGAGGCGGCATCGCAGAGGCTGCAGAAGATCCCGAAGGAGGAGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037996.7
ENSMUST00000189593.2
CDS CAA 90 bp TGGCGGCAGGAGTGTCTCCTCCGCCTTCTGCATGACCGACGCCTCTaGTGGATCCTATGTAGCCTCTTACGAGAGCAGCGCCTGTGTCTG +
Preference number: 6 (lower is better)
Translates to: WRQECLLRLLHDRRL*WILCSLLREQRLCL
Trigger: CAGACACAGGCGCTGCTCTCGTAAGAGGCTACATAGGATCCACAAGAGGCGTCGGTCATGCAGAAGGCGGAGGAGACACTCCTGCCGCCA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037996.7
ENSMUST00000189593.2
CDS CCA 72 bp TGTCTCCTCCGCCTTCTGCATGACCGACGCCTCTTGTaGATCCTATGTAGCCTCTTACGAGAGCAGCGCCTG +
Preference number: 6 (lower is better)
Translates to: CLLRLLHDRRLL*ILCSLLREQRL
Trigger: CAGGCGCTGCTCTCGTAAGAGGCTACATAGGATCCACAAGAGGCGTCGGTCATGCAGAAGGCGGAGGAGACA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037996.7
ENSMUST00000189593.2
CDS CAA 72 bp GAGTGTCTCCTCCGCCTTCTGCATGACCGACGCCTCTaGTGGATCCTATGTAGCCTCTTACGAGAGCAGCGC +
Preference number: 6 (lower is better)
Translates to: ECLLRLLHDRRL*WILCSLLREQR
Trigger: GCGCTGCTCTCGTAAGAGGCTACATAGGATCCACAAGAGGCGTCGGTCATGCAGAAGGCGGAGGAGACACTC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037996.7
ENSMUST00000189593.2