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Pregenerated sensors for PRM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022501

Ensembl transcript IDs: ENSMUST00000023144.6, ENSMUST00000230568.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGTGGCATTGTTCCTTAGCAGGCTCCTGTTTTTCATCGGACGGTaGCATTTTTCAAGATGTGGCGAGATGCTCTTGAAGTCTGGTAAA +
Preference number: 1 (lower is better)
Translates to: QVALFLSRLLFFIGR*HFSRCGEMLLKSGK
Trigger: TTTACCAGACTTCAAGAGCATCTCGCCACATCTTGAAAAATGCCACCGTCCGATGAAAAACAGGAGCCTGCTAAGGAACAATGCCACCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2
3UTR-3UTR CCA 90 bp TCAACATTTATTGACAGGTGGCATTGTTCCTTAGCAGGCTCCTGTTTTTCATCGGCATTTTTCAAGATGTaGCGAGATGCTCTTGAAGTC +
Preference number: 2 (lower is better)
Translates to: STFIDRWHCSLAGSCFSSAFFKM*RDALEV
Trigger: GACTTCAAGAGCATCTCGCCACATCTTGAAAAATGC...CGATGAAAAACAGGAGCCTGCTAAGGAACAATGCCACCTGTCAATAAATGTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2
3UTR CCA 72 bp TTGTTCCTTAGCAGGCTCCTGTTTTTCATCGGACGGTaGCATTTTTCAAGATGTGGCGAGATGCTCTTGAAG +
Preference number: 3 (lower is better)
Translates to: LFLSRLLFFIGR*HFSRCGEMLLK
Trigger: CTTCAAGAGCATCTCGCCACATCTTGAAAAATGCCACCGTCCGATGAAAAACAGGAGCCTGCTAAGGAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2
CDS-3UTR TCA 90 bp TTTTCAAGATGTGGCGAGATGCTCTTGAAGTCTGGTAAAATTCTCACGCAGGAGACACCTTATGGTGTATaGGCGGCGGCGACGGCAGCA +
Preference number: 4 (lower is better)
Translates to: FSRCGEMLLKSGKILTQETPYGV*AAATAA
Trigger: TGCTGCCGTCGCCGCCGCTCATACACCATAAGGTGT...CTCCTGCGTGAGAATTTTACCAGACTTCAAGAGCATCTCGCCACATCTTGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2
CDS-3UTR TCA 90 bp CATTGTTCCTTAGCAGGCTCCTGTTTTTCATCGGACGGTGGCATTTTTCAAGATACACCTTATGGTGTATaGGCGGCGGCGACGGCAGCA +
Preference number: 4 (lower is better)
Translates to: HCSLAGSCFSSDGGIFQDTPYGV*AAATAA
Trigger: TGCTGCCGTCGCCGCCGCTCATACACCATAAGGTGT...ATCTTGAAAAATGCCACCGTCCGATGAAAAACAGGAGCCTGCTAAGGAACAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2
CDS-3UTR GCA 90 bp GCATTGTTCCTTAGCAGGCTCCTGTTTTTCATCGGACGGTGGCATTTTTCAAGATGCTCCTGCTTTTGCTaGGGCAGCATCGGTATCTGG +
Preference number: 4 (lower is better)
Translates to: ALFLSRLLFFIGRWHFSRCSCFC*GSIGIW
Trigger: CCAGATACCGATGCTGCCGCAGCAAAAGCAGGAGCA...TCTTGAAAAATGCCACCGTCCGATGAAAAACAGGAGCCTGCTAAGGAACAATGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2
CDS GCA 90 bp TCCTCCGCCGGCAGCATCGCCTCCTCCGTCTGCGACATCTTCGCCTaGGACGGCGGCATCTGCTCCTGCTTTTGCTGCGGCAGCATCGGT +
Preference number: 5 (lower is better)
Translates to: SSAGSIASSVCDIFA*DGGICSCFCCGSIG
Trigger: ACCGATGCTGCCGCAGCAAAAGCAGGAGCAGATGCCGCCGTCGCAGGCGAAGATGTCGCAGACGGAGGAGGCGATGCTGCCGGCGGAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2
CDS GCA 90 bp GGCAGCATCTTCGCCTCCTCCGCCGGCAGCATCGCCTCCTCCGTCTaGGACATCTTCGCCTGCGACGGCGGCATCTGCTCCTGCTTTTGC +
Preference number: 5 (lower is better)
Translates to: GSIFASSAGSIASSV*DIFACDGGICSCFC
Trigger: GCAAAAGCAGGAGCAGATGCCGCCGTCGCAGGCGAAGATGTCGCAGACGGAGGAGGCGATGCTGCCGGCGGAGGAGGCGAAGATGCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2
CDS GCA 72 bp TTCGCCTCCTCCGCCGGCAGCATCGCCTCCTCCGTCTaGGACATCTTCGCCTGCGACGGCGGCATCTGCTCC +
Preference number: 6 (lower is better)
Translates to: FASSAGSIASSV*DIFACDGGICS
Trigger: GGAGCAGATGCCGCCGTCGCAGGCGAAGATGTCGCAGACGGAGGAGGCGATGCTGCCGGCGGAGGAGGCGAA
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2
CDS GCA 72 bp GGCAGCATCGCCTCCTCCGTCTGCGACATCTTCGCCTaGGACGGCGGCATCTGCTCCTGCTTTTGCTGCGGC +
Preference number: 6 (lower is better)
Translates to: GSIASSVCDIFA*DGGICSCFCCG
Trigger: GCCGCAGCAAAAGCAGGAGCAGATGCCGCCGTCGCAGGCGAAGATGTCGCAGACGGAGGAGGCGATGCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023144.6
ENSMUST00000230568.2