Pregenerated sensors for PRLH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090550Ensembl transcript IDs: ENSMUST00000166281.3
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGGCAGGATTGATGTCAGGGGTGCGGGTCTCCATGGAGTGCTGGTaGGCTCGGCTGGAAGCTCCTGGGAGGACTAAGCCTAGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: QAGLMSGVRVSMECW*ARLEAPGRTKPSSS Trigger: GCTGCTGCTAGGCTTAGTCCTCCCAGGAGCTTCCAGCCGAGCCCACCAGCACTCCATGGAGACCCGCACCCCTGACATCAATCCTGCCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166281.3 |
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| CDS GCA 90 bp | GTGTACCAGGCAGGATTGATGTCAGGGGTGCGGGTCTCCATGGAGTaGTGGTGGGCTCGGCTGGAAGCTCCTGGGAGGACTAAGCCTAGC | + |
|
Preference number: 5 (lower is better) Translates to: VYQAGLMSGVRVSME*WWARLEAPGRTKPS Trigger: GCTAGGCTTAGTCCTCCCAGGAGCTTCCAGCCGAGCCCACCAGCACTCCATGGAGACCCGCACCCCTGACATCAATCCTGCCTGGTACAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166281.3 |
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| CDS CAA 90 bp | AAGCGGCCCACAGGCCTGATCCCACGACCCGTGTACCAGGCAGGATaGATGTCAGGGGTGCGGGTCTCCATGGAGTGCTGGTGGGCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: KRPTGLIPRPVYQAG*MSGVRVSMECWWAR Trigger: CCGAGCCCACCAGCACTCCATGGAGACCCGCACCCCTGACATCAATCCTGCCTGGTACACGGGTCGTGGGATCAGGCCTGTGGGCCGCTT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166281.3 |
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| CDS CCA 72 bp | GGGTGCGGGTCTCCATGGAGTGCTGGTGGGCTCGGCTaGAAGCTCCTGGGAGGACTAAGCCTAGCAGCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: GCGSPWSAGGLG*KLLGGLSLAAA Trigger: TGCTGCTGCTAGGCTTAGTCCTCCCAGGAGCTTCCAGCCGAGCCCACCAGCACTCCATGGAGACCCGCACCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166281.3 |
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| CDS CCA 72 bp | TTGATGTCAGGGGTGCGGGTCTCCATGGAGTGCTGGTaGGCTCGGCTGGAAGCTCCTGGGAGGACTAAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: LMSGVRVSMECW*ARLEAPGRTKP Trigger: AGGCTTAGTCCTCCCAGGAGCTTCCAGCCGAGCCCACCAGCACTCCATGGAGACCCGCACCCCTGACATCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166281.3 |
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| CDS CCA 72 bp | GGATTGATGTCAGGGGTGCGGGTCTCCATGGAGTGCTaGTGGGCTCGGCTGGAAGCTCCTGGGAGGACTAAG | + |
|
Preference number: 6 (lower is better) Translates to: GLMSGVRVSMEC*WARLEAPGRTK Trigger: CTTAGTCCTCCCAGGAGCTTCCAGCCGAGCCCACCAGCACTCCATGGAGACCCGCACCCCTGACATCAATCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166281.3 |
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