Pregenerated sensors for PRL8A9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006490

Ensembl transcript IDs: ENSMUST00000006662.4

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	AAAAGAACCATCTCAGCAATGGACTCTTGTGGAACATTTCCAAAACAGTCAGGGCCACAGCAGCAAGTTTaGTACCACCAGCAGCAGGAG	+
Preference number: 4 (lower is better) Translates to: KRTISAMDSCGTFPKQSGPQQQV*YHQQQE Trigger: CTCCTGCTGCTGGTGGTATCAAACTTGCTGCTGTGG...CCCTGACTGTTTTGGAAATGTTCCACAAGAGTCCATTGCTGAGATGGTTCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR GCA 90 bp	GAACCATCTCAGCAATGGACTCTTGTGGAACATTTCCAAAACAGTCAGGGTAGAGCAGCCGCTCTTTTGTaGCATACATGCAGGAATTGC	+
Preference number: 4 (lower is better) Translates to: EPSQQWTLVEHFQNSQGRAAALL*HTCRNC Trigger: GCAATTCCTGCATGTATGGCACAAAAGAGCGGCTGC...TCTACCCTGACTGTTTTGGAAATGTTCCACAAGAGTCCATTGCTGAGATGGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR TCA 90 bp	TTAAAAGAACCATCTCAGCAATGGACTCTTGTGGAACATTTCCAAAACAGTCAGCAGCAGGAGTGCACCTaGGAAGTGAGGTTGACTCAG	+
Preference number: 4 (lower is better) Translates to: LKEPSQQWTLVEHFQNSQQQECT*EVRLTQ Trigger: CTGAGTCAACCTCACTTCTCAGGTGCACTCCTGCTG...CTGACTGTTTTGGAAATGTTCCACAAGAGTCCATTGCTGAGATGGTTCTTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR GCA 90 bp	TCTCAGCAATGGACTCTTGTGGAACATTTCCAAAACAGTCAGGGTAGATGTGTAAGGGTTCCAGCTGTCTaGATGGCACTGTTAAATGTT	+
Preference number: 4 (lower is better) Translates to: SQQWTLVEHFQNSQGRCVRVPAV*MALLNV Trigger: AACATTTAACAGTGCCATGCAGACAGCTGGAACCCT...TACACATCTACCCTGACTGTTTTGGAAATGTTCCACAAGAGTCCATTGCTGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR GCA 90 bp	TTAAAAGAACCATCTCAGCAATGGACTCTTGTGGAACATTTCCAAAACAGTCAGGTTTCAGCATCTGCATaGTCAGTTCCCCTATCAGGG	+
Preference number: 4 (lower is better) Translates to: LKEPSQQWTLVEHFQNSQVSASA*SVPLSG Trigger: CCCTGATAGGGGAACTGAGCATGCAGATGCTGAAAC...CTGACTGTTTTGGAAATGTTCCACAAGAGTCCATTGCTGAGATGGTTCTTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR GCA 90 bp	TCTCAGCAATGGACTCTTGTGGAACATTTCCAAAACAGTCAGGGTAGATGTGTATTCAGTTTCAGCATCTaGATGCTCAGTTCCCCTATC	+
Preference number: 4 (lower is better) Translates to: SQQWTLVEHFQNSQGRCVFSFSI*MLSSPI Trigger: GATAGGGGAACTGAGCATGCAGATGCTGAAACTGAA...TACACATCTACCCTGACTGTTTTGGAAATGTTCCACAAGAGTCCATTGCTGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR CAA 90 bp	AAAAGAACCATCTCAGCAATGGACTCTTGTGGAACATTTCCAAAACAGTCAGGGCCATACATGCAGGAATaGCTGAAGCTTTCTCCCACA	+
Preference number: 5 (lower is better) Translates to: KRTISAMDSCGTFPKQSGPYMQE*LKLSPT Trigger: TGTGGGAGAAAGCTTCAGCAATTCCTGCATGTATGG...CCCTGACTGTTTTGGAAATGTTCCACAAGAGTCCATTGCTGAGATGGTTCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR CAA 90 bp	CATCTCAGCAATGGACTCTTGTGGAACATTTCCAAAACAGTCAGGGTAGATGTGAAGCTCTACATAGAATaGGTCAGCAAGTGTACGAAG	+
Preference number: 5 (lower is better) Translates to: HLSNGLLWNISKTVRVDVKLYIE*VSKCTK Trigger: CTTCGTACACTTGCTGACCAATTCTATGTAGAGCTT...CACATCTACCCTGACTGTTTTGGAAATGTTCCACAAGAGTCCATTGCTGAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR CAA 90 bp	GGATTCAAAAGATATACAATTAAAAGAACCATCTCAGCAATGGACTCTTGTGGACCAGCAGCCGCTCTTTaGTGCCATACATGCAGGAAT	+
Preference number: 5 (lower is better) Translates to: GFKRYTIKRTISAMDSCGPAAAL*CHTCRN Trigger: ATTCCTGCATGTATGGCACAAAAGAGCGGCTGCTGG...TCCACAAGAGTCCATTGCTGAGATGGTTCTTTTAATTGTATATCTTTTGAATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR CAA 90 bp	TCTCAGCAATGGACTCTTGTGGAACATTTCCAAAACAGTCAGGGTAGATGTGTAAGTTTCAGGGACGTCTaGCATCACATTCAGTTCAAT	+
Preference number: 5 (lower is better) Translates to: SQQWTLVEHFQNSQGRCVSFRDV*HHIQFN Trigger: ATTGAACTGAATGTGATGCAAGACGTCCCTGAAACT...TACACATCTACCCTGACTGTTTTGGAAATGTTCCACAAGAGTCCATTGCTGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS-3UTR CAA 90 bp	AGATATACAATTAAAAGAACCATCTCAGCAATGGACTCTTGTGGAACATTTCCATCATTGTATATGCAGTaGGAAAGGTTAAACATTGCC	+
Preference number: 5 (lower is better) Translates to: RYTIKRTISAMDSCGTFPSLYMQ*ERLNIA Trigger: GGCAATGTTTAACCTTTCCAACTGCATATACAATGA...TGGAAATGTTCCACAAGAGTCCATTGCTGAGATGGTTCTTTTAATTGTATATCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS GCA 72 bp	AGGTCTTCCAGGAGTTTTCTCTTGTTCTCTTCGATCTaGCTGACTTTTGAAAGGATAGTTTCAGGGACGTCT	+
Preference number: 6 (lower is better) Translates to: RSSRSFLLFSSI*LTFERIVSGTS Trigger: AGACGTCCCTGAAACTATCCTTTCAAAAGTCAGGCAGATCGAAGAGAACAAGAGAAAACTCCTGGAAGACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS CAA 72 bp	GTGAGTATCCACCTAAGGTCTTCCAGGAGTTTTCTCTaGTTCTCTTCGATCTGCCTGACTTTTGAAAGGATA	+
Preference number: 6 (lower is better) Translates to: VSIHLRSSRSFL*FSSICLTFERI Trigger: TATCCTTTCAAAAGTCAGGCAGATCGAAGAGAACAAGAGAAAACTCCTGGAAGACCTTAGGTGGATACTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006662.4
CDS GCA 72 bp	TGCCTGACTTTTGAAAGGATAGTTTCAGGGACGTCTTaGATCACATTCAGTTCAATTACTACATGGTATAGA	+
Preference number: 6 (lower is better) Translates to: CLTFERIVSGTS*ITFSSITTWYR Trigger: TCTATACCATGTAGTAATTGAACTGAATGTGATGCAAGACGTCCCTGAAACTATCCTTTCAAAAGTCAGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006662.4