Pregenerated sensors for PRL8A8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021346Ensembl transcript IDs: ENSMUST00000018389.5, ENSMUST00000110350.9, ENSMUST00000223621.2, ENSMUST00000224072.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TTCAAATGTTTACAATTAAAAGCAACAGCTCTGCAATaGACTTTTGTGGAGCGTCTCCAAAGCAGATATGGT | + |
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Preference number: 3 (lower is better) Translates to: FKCLQLKATALQ*TFVERLQSRYG Trigger: ACCATATCTGCTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAACATTTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR TCA 90 bp | ACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGCAGAGTGAGATGCAGCTCTaGAAACAATCTCATCCCGCC | + |
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Preference number: 4 (lower is better) Translates to: TIKSNSSAMNFCGASPKQSEMQL*KQSHPA Trigger: GGCGGGATGAGATTGTTTTCAGAGCTGCATCTCACT...CTGCTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR TCA 90 bp | ATGTTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAGTGAGATGCAGCTCTaGAAACAATCTCATCCCGCC | + |
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Preference number: 4 (lower is better) Translates to: MFTIKSNSSAMNFCGASPSEMQL*KQSHPA Trigger: GGCGGGATGAGATTGTTTTCAGAGCTGCATCTCACT...TGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR TCA 90 bp | ACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGCAGAGAGTAGAATGGCAGTaGGATGCAGCTCTGAAAACA | + |
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Preference number: 4 (lower is better) Translates to: TIKSNSSAMNFCGASPKQRVEWQ*DAALKT Trigger: TGTTTTCAGAGCTGCATCTCACTGCCATTCTACTCT...CTGCTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR TCA 90 bp | TTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGCAGCAGGAGTGCATCTaGGAAGTGAGGTTGTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: FTIKSNSSAMNFCGASPKQQECI*EVRLSE Trigger: TTCAGACAACCTCACTTCTCAGATGCACTCCTGCTG...CTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110350.9 |
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| CDS-3UTR TCA 90 bp | TTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGAGAGTAGAATGGCAGTaGGATGCAGCTCTGAAAACA | + |
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Preference number: 4 (lower is better) Translates to: FTIKSNSSAMNFCGASPKRVEWQ*DAALKT Trigger: TGTTTTCAGAGCTGCATCTCACTGCCATTCTACTCT...CTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR TCA 90 bp | ATGTTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAATCTCCTTGGCTTTTaGGAGGATAGTTTCAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: MFTIKSNSSAMNFCGASPNLLGF*EDSFRD Trigger: GTCCCTGAAACTATCCTCTCAAAAGCCAAGGAGATT...TGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR TCA 90 bp | ATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGCAGATATGCAAATTTTCCAGATaGGAATTGGTTGTGGTAAAG | + |
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Preference number: 4 (lower is better) Translates to: IKSNSSAMNFCGASPKQICKFSR*ELVVVK Trigger: CTTTACCACAACCAATTCTCATCTGGAAAATTTGCA...TATCTGCTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR CCA 90 bp | ATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGCAGATAAAAGAAGTTCCCAGCTaGGAAAAATTTCCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: IKSNSSAMNFCGASPKQIKEVPS*EKFPSS Trigger: AGAAGAAGGAAATTTTTCCCAGCTGGGAACTTCTTT...TATCTGCTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR CCA 90 bp | TTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGTCATACTCTAGACAGTaGGAAAGGTTAAACATTGCC | + |
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Preference number: 4 (lower is better) Translates to: FTIKSNSSAMNFCGASPKSYSRQ*ERLNIA Trigger: GGCAATGTTTAACCTTTCCCACTGTCTAGAGTATGA...CTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR CCA 90 bp | ATGTTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCATCATACTCTAGACAGTaGGAAAGGTTAAACATTGCC | + |
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Preference number: 4 (lower is better) Translates to: MFTIKSNSSAMNFCGASPSYSRQ*ERLNIA Trigger: GGCAATGTTTAACCTTTCCCACTGTCTAGAGTATGA...TGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR TCA 90 bp | ATGTTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCATGCAAATTTTCCAGATaGGAATTGGTTGTGGTAAAG | + |
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Preference number: 4 (lower is better) Translates to: MFTIKSNSSAMNFCGASPCKFSR*ELVVVK Trigger: CTTTACCACAACCAATTCTCATCTGGAAAATTTGCA...TGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR TCA 90 bp | TTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGTGCAAATTTTCCAGATaGGAATTGGTTGTGGTAAAG | + |
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Preference number: 4 (lower is better) Translates to: FTIKSNSSAMNFCGASPKCKFSR*ELVVVK Trigger: CTTTACCACAACCAATTCTCATCTGGAAAATTTGCA...CTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR CCA 90 bp | TTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGAAAGAAGTTCCCAGCTaGGAAAAATTTCCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: FTIKSNSSAMNFCGASPKKEVPS*EKFPSS Trigger: AGAAGAAGGAAATTTTTCCCAGCTGGGAACTTCTTT...CTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS TCA 90 bp | GTCACGCAGAATTTGTCTGTTGTTCTCTTCAATCTCCTTGGCTTTTaGGAGGATAGTTTCAGGGACATCTTTCATGGCACTCAGTTCAAT | + |
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Preference number: 5 (lower is better) Translates to: VTQNLSVVLFNLLGF*EDSFRDIFHGTQFN Trigger: ATTGAACTGAGTGCCATGAAAGATGTCCCTGAAACTATCCTCTCAAAAGCCAAGGAGATTGAAGAGAACAACAGACAAATTCTGCGTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000223621.2 ENSMUST00000224072.2 |
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| CDS-3UTR CAA 90 bp | TTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGCGCAGAATTTGTCTGTaGTTCTCTTCAATCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: FTIKSNSSAMNFCGASPKRRICL*FSSISL Trigger: CAAGGAGATTGAAGAGAACAACAGACAAATTCTGCG...CTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR CAA 90 bp | ATGTTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCACGCAGAATTTGTCTGTaGTTCTCTTCAATCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: MFTIKSNSSAMNFCGASPRRICL*FSSISL Trigger: CAAGGAGATTGAAGAGAACAACAGACAAATTCTGCG...TGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR CAA 90 bp | TTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGAAGGTCACGCAGAATTaGTCTGTTGTTCTCTTCAAT | + |
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Preference number: 5 (lower is better) Translates to: FTIKSNSSAMNFCGASPKKVTQN*SVVLFN Trigger: ATTGAAGAGAACAACAGACAAATTCTGCGTGACCTT...CTTTGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS-3UTR CAA 90 bp | ATGTTTACAATTAAAAGCAACAGCTCTGCAATGAACTTTTGTGGAGCGTCTCCAAAGGTCACGCAGAATTaGTCTGTTGTTCTCTTCAAT | + |
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Preference number: 5 (lower is better) Translates to: MFTIKSNSSAMNFCGASPKVTQN*SVVLFN Trigger: ATTGAAGAGAACAACAGACAAATTCTGCGTGACCTT...TGGAGACGCTCCACAAAAGTTCATTGCAGAGCTGTTGCTTTTAATTGTAAACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS CAA 90 bp | CCATACATGCAGGAATTGATGAAGCTTTCTCCCACAGCAGCAAGTTaGACAACAGTAGCAGCAGGAGTGCATCTGAGAAGTGAGGTTGTC | + |
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Preference number: 6 (lower is better) Translates to: PYMQELMKLSPTAAS*TTVAAGVHLRSEVV Trigger: GACAACCTCACTTCTCAGATGCACTCCTGCTGCTACTGTTGTCAAACTTGCTGCTGTGGGAGAAAGCTTCATCAATTCCTGCATGTATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110350.9 |
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| CDS TCA 72 bp | CCCTTATTTGGGGGATTTGTTAGAGTAGAATGGCAGTaGGATGCAGCTCTGAAAACAATCTCATCCCGCCGA | + |
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Preference number: 6 (lower is better) Translates to: PLFGGFVRVEWQ*DAALKTISSRR Trigger: TCGGCGGGATGAGATTGTTTTCAGAGCTGCATCTCACTGCCATTCTACTCTAACAAATCCCCCAAATAAGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000223621.2 ENSMUST00000224072.2 |
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| CDS CAA 72 bp | CAGGAATTGATGAAGCTTTCTCCCACAGCAGCAAGTTaGACAACAGTAGCAGCAGGAGTGCATAGAAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: QELMKLSPTAAS*TTVAAGVHRSE Trigger: CTCACTTCTATGCACTCCTGCTGCTACTGTTGTCAAACTTGCTGCTGTGGGAGAAAGCTTCATCAATTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018389.5 |
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| CDS CAA 72 bp | CAGGAATTGATGAAGCTTTCTCCCACAGCAGCAAGTTaGACAACAGTAGCAGCAGGAGTGCATCTGAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: QELMKLSPTAAS*TTVAAGVHLRS Trigger: ACTTCTCAGATGCACTCCTGCTGCTACTGTTGTCAAACTTGCTGCTGTGGGAGAAAGCTTCATCAATTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110350.9 |
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| CDS CAA 72 bp | CAGGAATTGATGAAGCTTTCTCCCACAGCAGCAAGTTaGACAACAGTAGCAGCAGGAGTGCATCTGAATCAC | + |
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Preference number: 6 (lower is better) Translates to: QELMKLSPTAAS*TTVAAGVHLNH Trigger: GTGATTCAGATGCACTCCTGCTGCTACTGTTGTCAAACTTGCTGCTGTGGGAGAAAGCTTCATCAATTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223621.2 |
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| CDS CAA 90 bp | CACCTAAGGTCACGCAGAATTTGTCTGTTGTTCTCTTCAATCTCCTaGGCTTTTGAGAGGATAGTTTCAGGGACATCTTTCATGGCACTC | + |
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Preference number: 6 (lower is better) Translates to: HLRSRRICLLFSSIS*AFERIVSGTSFMAL Trigger: GAGTGCCATGAAAGATGTCCCTGAAACTATCCTCTCAAAAGCCAAGGAGATTGAAGAGAACAACAGACAAATTCTGCGTGACCTTAGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000223621.2 ENSMUST00000224072.2 |
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| CDS CAA 72 bp | CAGGAATTGATGAAGCTTTCTCCCACAGCAGCAAGTTaGACAACAGTAGCAGCAGGAGTGCATAATCACAAT | + |
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Preference number: 6 (lower is better) Translates to: QELMKLSPTAAS*TTVAAGVHNHN Trigger: ATTGTGATTATGCACTCCTGCTGCTACTGTTGTCAAACTTGCTGCTGTGGGAGAAAGCTTCATCAATTCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224072.2 |
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| CDS CAA 72 bp | GCAGCTCTGAAAACAATCTCATCCCGCCGAACCAGTTaGGAAGTAAGAGTTGCAAATTTTCCAGATGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: AALKTISSRRTS*EVRVANFPDEN Trigger: ATTCTCATCTGGAAAATTTGCAACTCTTACTTCCAAACTGGTTCGGCGGGATGAGATTGTTTTCAGAGCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000223621.2 ENSMUST00000224072.2 |
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| CDS CAA 90 bp | CCATACATGCAGGAATTGATGAAGCTTTCTCCCACAGCAGCAAGTTaGACAACAGTAGCAGCAGGAGTGCATAATCACAATTCTTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: PYMQELMKLSPTAAS*TTVAAGVHNHNSFS Trigger: AGAAAAAGAATTGTGATTATGCACTCCTGCTGCTACTGTTGTCAAACTTGCTGCTGTGGGAGAAAGCTTCATCAATTCCTGCATGTATGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000224072.2 |
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| CDS TCA 72 bp | AAGAAGTTCCCAGCTGGGAAAAATTTCCTTCTTCTTTaGGGTAGGATAGACCTCAGTGATTATCCACCTAAG | + |
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Preference number: 6 (lower is better) Translates to: KKFPAGKNFLLL*GRIDLSDYPPK Trigger: CTTAGGTGGATAATCACTGAGGTCTATCCTACCTCAAAGAAGAAGGAAATTTTTCCCAGCTGGGAACTTCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000224072.2 |
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| CDS CAA 72 bp | GTGATTATCCACCTAAGGTCACGCAGAATTTGTCTGTaGTTCTCTTCAATCTCCTTGGCTTTTGAGAGGATA | + |
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Preference number: 6 (lower is better) Translates to: VIIHLRSRRICL*FSSISLAFERI Trigger: TATCCTCTCAAAAGCCAAGGAGATTGAAGAGAACAACAGACAAATTCTGCGTGACCTTAGGTGGATAATCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000223621.2 ENSMUST00000224072.2 |
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| CDS TCA 72 bp | AACCAGTTTGGAAGTAAGAGTTGCAAATTTTCCAGATaGGAATTGGTTGTGGTAAAGCTCTACATAGAATTG | + |
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Preference number: 6 (lower is better) Translates to: NQFGSKSCKFSR*ELVVVKLYIEL Trigger: CAATTCTATGTAGAGCTTTACCACAACCAATTCTCATCTGGAAAATTTGCAACTCTTACTTCCAAACTGGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000018389.5 ENSMUST00000110350.9 ENSMUST00000223621.2 ENSMUST00000224072.2 |
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