Pregenerated sensors for PRL8A6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021345Ensembl transcript IDs: ENSMUST00000018392.9, ENSMUST00000080762.12, ENSMUST00000110355.10
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACAAGCATTTCAAATGTATACAATTAAACACAACTGCTCAGCAATaGACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTATG | + |
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Preference number: 1 (lower is better) Translates to: HKHFKCIQLNTTAQQ*TFVEHLQSRHGKCM Trigger: CATACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTGTGTTTAATTGTATACATTTGAAATGCTTGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 |
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| CDS-3UTR TCA 90 bp | ACACAACTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTACCACAACAGCAAATTTaGCACCACCAGCAGCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: TQLLSNELLWSIFKADMVPQQQI*HHQQQE Trigger: CTCCTGCTGCTGGTGGTGTCAAATTTGCTGTTGTGG...TACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR TCA 90 bp | CTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTACAGCAGGAGTGGACCTaGGAAGTGAGGTTGACTCAA | + |
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Preference number: 4 (lower is better) Translates to: LLSNELLWSIFKADMVNVQQEWT*EVRLTQ Trigger: TTGAGTCAACCTCACTTCTCAGGTCCACTCCTGCTG...TACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR TCA 90 bp | CTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTATGTCCACAACAGCAAATTTaGCACCACCAGCAGCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LSNELLWSIFKADMVNVCPQQQI*HHQQQE Trigger: CTCCTGCTGCTGGTGGTGTCAAATTTGCTGTTGTGG...ACATACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR TCA 90 bp | CTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTATGTCAGCAGGAGTGGACCTaGGAAGTGAGGTTGACTCAA | + |
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Preference number: 4 (lower is better) Translates to: LSNELLWSIFKADMVNVCQQEWT*EVRLTQ Trigger: TTGAGTCAACCTCACTTCTCAGGTCCACTCCTGCTG...ACATACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR TCA 90 bp | CTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTAAGTAACTTCCAGCTCTaGCAACAGTCTTATCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LLSNELLWSIFKADMVNVSNFQL*QQSYPV Trigger: GACAGGATAAGACTGTTGTCAGAGCTGGAAGTTACT...TACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018392.9 ENSMUST00000110355.10 |
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| CDS-3UTR TCA 90 bp | CAACTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATAGTAACTTCCAGCTCTaGCAACAGTCTTATCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: QLLSNELLWSIFKADMVNSNFQL*QQSYPV Trigger: GACAGGATAAGACTGTTGTCAGAGCTGGAAGTTACT...ATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018392.9 ENSMUST00000110355.10 |
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| CDS-3UTR TCA 90 bp | AGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTATGTGCAGATCTCCTTGGCTTTTaGGAGGATAGTTTCAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SNELLWSIFKADMVNVCADLLGF*EDSFRD Trigger: GTCCCTGAAACTATCCTCTCAAAAGCCAAGGAGATC...TGCACATACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CCA 90 bp | ACACAACTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAGGGTTTCAGCTTTCTaGGTGGCACTGTTAAATGTT | + |
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Preference number: 4 (lower is better) Translates to: TQLLSNELLWSIFKADMVRVSAF*VALLNV Trigger: AACATTTAACAGTGCCACCCAGAAAGCTGAAACCCT...TACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CCA 90 bp | CAACTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATTGGTCAGCAAGATTATaGAGGGTTTCAGCTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: QLLSNELLWSIFKADMVNWSARL*RVSAFW Trigger: CCAGAAAGCTGAAACCCTCCATAATCTTGCTGACCA...ATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CCA 90 bp | CTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTATGGTCAGCAAGATTATaGAGGGTTTCAGCTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LLSNELLWSIFKADMVNVWSARL*RVSAFW Trigger: CCAGAAAGCTGAAACCCTCCATAATCTTGCTGACCA...TACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR TCA 90 bp | ACACAACTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAGACACTTCAATAATCTaGGCTGAAGCAAAATGTACT | + |
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Preference number: 4 (lower is better) Translates to: TQLLSNELLWSIFKADMVDTSII*AEAKCT Trigger: AGTACATTTTGCTTCAGCTCAGATTATTGAAGTGTC...TACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CCA 90 bp | AGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTATGTGCAAGGGTTTCAGCTTTCTaGGTGGCACTGTTAAATGTT | + |
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Preference number: 4 (lower is better) Translates to: SNELLWSIFKADMVNVCARVSAF*VALLNV Trigger: AACATTTAACAGTGCCACCCAGAAAGCTGAAACCCT...TGCACATACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CCA 90 bp | CAACTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGAAAGATATTCCCAGTaGGGAAATTCTTCTGTCATC | + |
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Preference number: 4 (lower is better) Translates to: QLLSNELLWSIFKADMVNERYSQ*GNSSVI Trigger: GATGACAGAAGAATTTCCCCACTGGGAATATCTTTC...ATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR TCA 90 bp | CAACTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGACACTTCAATAATCTaGGCTGAAGCAAAATGTACT | + |
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Preference number: 4 (lower is better) Translates to: QLLSNELLWSIFKADMVNDTSII*AEAKCT Trigger: AGTACATTTTGCTTCAGCTCAGATTATTGAAGTGTC...ATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS CCA 90 bp | TCTACATATAATTGGTCAGCAAGATTATGGAGGGTTTCAGCTTTCTaGGTGGCACTGTTAAATGTTTCCAAAAGTGGGTTCCAGCAACCA | + |
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Preference number: 5 (lower is better) Translates to: STYNWSARLWRVSAF*VALLNVSKSGFQQP Trigger: TGGTTGCTGGAACCCACTTTTGGAAACATTTAACAGTGCCACCCAGAAAGCTGAAACCCTCCATAATCTTGCTGACCAATTATATGTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CAA 90 bp | ACACAACTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAAGGTCACTCAGGATTaGTCTGTTGTTCTCTTCGAT | + |
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Preference number: 5 (lower is better) Translates to: TQLLSNELLWSIFKADMVKVTQD*SVVLFD Trigger: ATCGAAGAGAACAACAGACAAATCCTGAGTGACCTT...TACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CAA 90 bp | CTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTATGTAAGGTCACTCAGGATTaGTCTGTTGTTCTCTTCGAT | + |
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Preference number: 5 (lower is better) Translates to: LSNELLWSIFKADMVNVCKVTQD*SVVLFD Trigger: ATCGAAGAGAACAACAGACAAATCCTGAGTGACCTT...ACATACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CAA 90 bp | CAACTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATTTTCAGGGACATCTTTaGTTGCACTTAGTTCAATCA | + |
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Preference number: 5 (lower is better) Translates to: QLLSNELLWSIFKADMVNFQGHL*LHLVQS Trigger: TGATTGAACTAAGTGCAACAAAAGATGTCCCTGAAA...ATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAGTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CAA 90 bp | CTGCTCAGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTATTTCAGGGACATCTTTaGTTGCACTTAGTTCAATCA | + |
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Preference number: 5 (lower is better) Translates to: LLSNELLWSIFKADMVNVFQGHL*LHLVQS Trigger: TGATTGAACTAAGTGCAACAAAAGATGTCCCTGAAA...TACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCTGAGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS-3UTR CAA 90 bp | AGCAATGAACTTTTGTGGAGCATCTTCAAAGCAGACATGGTAAATGTATGTGCATTTCAGGGACATCTTTaGTTGCACTTAGTTCAATCA | + |
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Preference number: 5 (lower is better) Translates to: SNELLWSIFKADMVNVCAFQGHL*LHLVQS Trigger: TGATTGAACTAAGTGCAACAAAAGATGTCCCTGAAA...TGCACATACATTTACCATGTCTGCTTTGAAGATGCTCCACAAAAGTTCATTGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS GCA 72 bp | AAGATATTCCCAGTGGGGAAATTCTTCTGTCATCTCTaGCGCAGGAGAGACCTTGGTGAGTATCCACCTAAG | + |
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Preference number: 6 (lower is better) Translates to: KIFPVGKFFCHL*RRRDLGEYPPK Trigger: CTTAGGTGGATACTCACCAAGGTCTCTCCTGCGGCAGAGATGACAGAAGAATTTCCCCACTGGGAATATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS CCA 72 bp | AGCTTTCTGGGTGGCACTGTTAAATGTTTCCAAAAGTaGGTTCCAGCAACCACCCTCTTCTGCAACACATGG | + |
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Preference number: 6 (lower is better) Translates to: SFLGGTVKCFQK*VPATTLFCNTW Trigger: CCATGTGTTGCAGAAGAGGGTGGTTGCTGGAACCCACTTTTGGAAACATTTAACAGTGCCACCCAGAAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS CAA 72 bp | GGAAATTCTTCTGTCATCTCTGCCGCAGGAGAGACCTaGGTGAGTATCCACCTAAGGTCACTCAGGATTTGT | + |
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Preference number: 6 (lower is better) Translates to: GNSSVISAAGET*VSIHLRSLRIC Trigger: ACAAATCCTGAGTGACCTTAGGTGGATACTCACCAAGGTCTCTCCTGCGGCAGAGATGACAGAAGAATTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS CAA 90 bp | AAAGTGGGTTCCAGCAACCACCCTCTTCTGCAACACATGGAAGATTaGATGCAGCTTTTTCCCACAACAGCAAATTTGACACCACCAGCA | + |
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Preference number: 6 (lower is better) Translates to: KVGSSNHPLLQHMED*MQLFPTTANLTPPA Trigger: TGCTGGTGGTGTCAAATTTGCTGTTGTGGGAAAAAGCTGCATCAAATCTTCCATGTGTTGCAGAAGAGGGTGGTTGCTGGAACCCACTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS CAA 90 bp | GAGACCTTGGTGAGTATCCACCTAAGGTCACTCAGGATTTGTCTGTaGTTCTCTTCGATCTCCTTGGCTTTTGAGAGGATAGTTTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: ETLVSIHLRSLRICL*FSSISLAFERIVSG Trigger: CCCTGAAACTATCCTCTCAAAAGCCAAGGAGATCGAAGAGAACAACAGACAAATCCTGAGTGACCTTAGGTGGATACTCACCAAGGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS CAA 72 bp | GTGAGTATCCACCTAAGGTCACTCAGGATTTGTCTGTaGTTCTCTTCGATCTCCTTGGCTTTTGAGAGGATA | + |
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Preference number: 6 (lower is better) Translates to: VSIHLRSLRICL*FSSISLAFERI Trigger: TATCCTCTCAAAAGCCAAGGAGATCGAAGAGAACAACAGACAAATCCTGAGTGACCTTAGGTGGATACTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS CAA 90 bp | CACCTAAGGTCACTCAGGATTTGTCTGTTGTTCTCTTCGATCTCCTaGGCTTTTGAGAGGATAGTTTCAGGGACATCTTTTGTTGCACTT | + |
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Preference number: 6 (lower is better) Translates to: HLRSLRICLLFSSIS*AFERIVSGTSFVAL Trigger: AAGTGCAACAAAAGATGTCCCTGAAACTATCCTCTCAAAAGCCAAGGAGATCGAAGAGAACAACAGACAAATCCTGAGTGACCTTAGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS CCA 72 bp | GGGACATCTTTTGTTGCACTTAGTTCAATCACTAGATaGAATAGAGGGCTGATCCAGGAACCCACAAAATTG | + |
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Preference number: 6 (lower is better) Translates to: GTSFVALSSITR*NRGLIQEPTKL Trigger: CAATTTTGTGGGTTCCTGGATCAGCCCTCTATTCCATCTAGTGATTGAACTAAGTGCAACAAAAGATGTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS CAA 72 bp | TCACTCAGGATTTGTCTGTTGTTCTCTTCGATCTCCTaGGCTTTTGAGAGGATAGTTTCAGGGACATCTTTT | + |
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Preference number: 6 (lower is better) Translates to: SLRICLLFSSIS*AFERIVSGTSF Trigger: AAAAGATGTCCCTGAAACTATCCTCTCAAAAGCCAAGGAGATCGAAGAGAACAACAGACAAATCCTGAGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018392.9 ENSMUST00000080762.12 ENSMUST00000110355.10 |
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| CDS TCA 72 bp | CCAGCTCTGACAACAGTCTTATCCTGTCTAATTATTTaGGAACTAAAATCCCAAAATTGTCCAGATGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: PALTTVLSCLII*ELKSQNCPDEN Trigger: ATTCTCATCTGGACAATTTTGGGATTTTAGTTCTCAAATAATTAGACAGGATAAGACTGTTGTCAGAGCTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018392.9 ENSMUST00000110355.10 |
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