Pregenerated sensors for PRL8A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018259Ensembl transcript IDs: ENSMUST00000018403.8, ENSMUST00000110363.9, ENSMUST00000223918.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGCAGCAGGAGTGCCCCTaGGAAGTGAGGTTGACTCAA | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQQQECP*EVRLTQ Trigger: TTGAGTCAACCTCACTTCTCAGGGGCACTCCTGCTG...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018403.8 |
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| CDS-3UTR TCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGAGTGATTTCTGGCTCTaGGAACCTCCTCATCACGTC | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQSDFWL*EPPHHV Trigger: GACGTGATGAGGAGGTTCTCAGAGCCAGAAATCACT...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR TCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGTCATGTTCAGGTCCATaGGCTGGTGGGTTTGTGACA | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQSCSGP*AGGFVT Trigger: TGTCACAAACCCACCAGCTCATGGACCTGAACATGA...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR GCA 90 bp | TTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAACACCAGCAGCAGGAGTaGCCAGAAGTGAGGTTGACT | + |
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Preference number: 4 (lower is better) Translates to: FKSYTIKSKFSAMDCHGQHQQQE*PEVRLT Trigger: AGTCAACCTCACTTCTGGGCACTCCTGCTGCTGGTG...TTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110363.9 |
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| CDS-3UTR CCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGAGGTCCATGAGCTGGTaGGTTTGTGACATTAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQRSMSW*VCDIRV Trigger: CACTCTAATGTCACAAACCCACCAGCTCATGGACCT...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR TCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGTTGACATTCAGGAATTaGTGCAGCTTTCTCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQLTFRN*CSFLPQ Trigger: CTGTGGGAGAAAGCTGCATCAATTCCTGAATGTCAA...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR TCA 90 bp | AAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCAGTGATTTCTGGCTCTaGGAACCTCCTCATCACGTC | + |
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Preference number: 4 (lower is better) Translates to: KAIQLKASSQQWTVMDNCSDFWL*EPPHHV Trigger: GACGTGATGAGGAGGTTCTCAGAGCCAGAAATCACT...GCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR TCA 90 bp | AAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCTCATGTTCAGGTCCATaGGCTGGTGGGTTTGTGACA | + |
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Preference number: 4 (lower is better) Translates to: KAIQLKASSQQWTVMDNCSCSGP*AGGFVT Trigger: TGTCACAAACCCACCAGCTCATGGACCTGAACATGA...GCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR CCA 90 bp | AGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAAGGTCCATGAGCTGGTaGGTTTGTGACATTAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: SYTIKSKFSAMDCHGQLPRSMSW*VCDIRV Trigger: CACTCTAATGTCACAAACCCACCAGCTCATGGACCT...TGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR TCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGCCATTCTCTCCTGTTTaGCATTCAGGAATTGATGCA | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQPFSPV*HSGIDA Trigger: TGCATCAATTCCTGAATGTCAAACAGGAGAGAATGG...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR TCA 90 bp | ATGCATTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGAGTGATTTCTGGCTCTaGGAACCTCCTCATCACGTC | + |
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Preference number: 4 (lower is better) Translates to: MHSKAIQLKASSQQWTVMSDFWL*EPPHHV Trigger: GACGTGATGAGGAGGTTCTCAGAGCCAGAAATCACT...CATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAATGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR TCA 90 bp | TTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATCATGTTCAGGTCCATaGGCTGGTGGGTTTGTGACA | + |
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Preference number: 4 (lower is better) Translates to: FKSYTIKSKFSAMDCHGQSCSGP*AGGFVT Trigger: TGTCACAAACCCACCAGCTCATGGACCTGAACATGA...TTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR CCA 90 bp | AGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCATTCAGGTCCATGAGCTaGTGGGTTTGTGACATTAGA | + |
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Preference number: 4 (lower is better) Translates to: SYTIKSKFSAMDCHGQLPFRSMS*WVCDIR Trigger: TCTAATGTCACAAACCCACCAGCTCATGGACCTGAA...TGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR TCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGTTCAAATTGTCCAGCTaGGAATGGGTTGTGGTAAAA | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQFKLSS*EWVVVK Trigger: TTTTACCACAACCCATTCTCAGCTGGACAATTTGAA...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR GCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGGATTCAGGGACATTTTaGATGTCACTTAGTACTTCC | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQDSGTF*MSLSTS Trigger: GGAAGTACTAAGTGACATGCAAAATGTCCCTGAATC...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR CCA 90 bp | ATGCATTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGAGGTCCATGAGCTGGTaGGTTTGTGACATTAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: MHSKAIQLKASSQQWTVMRSMSW*VCDIRV Trigger: CACTCTAATGTCACAAACCCACCAGCTCATGGACCT...CATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAATGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR TCA 90 bp | TTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGACATTCAGGAATTaGTGCAGCTTTCTCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: FKSYTIKSKFSAMDCHGQLTFRN*CSFLPQ Trigger: CTGTGGGAGAAAGCTGCATCAATTCCTGAATGTCAA...TTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR TCA 90 bp | AAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCCATTCTCTCCTGTTTaGCATTCAGGAATTGATGCA | + |
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Preference number: 4 (lower is better) Translates to: KAIQLKASSQQWTVMDNCPFSPV*HSGIDA Trigger: TGCATCAATTCCTGAATGTCAAACAGGAGAGAATGG...GCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR TCA 90 bp | AGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCATTCAAATTGTCCAGCTaGGAATGGGTTGTGGTAAAA | + |
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Preference number: 4 (lower is better) Translates to: SYTIKSKFSAMDCHGQLPFKLSS*EWVVVK Trigger: TTTTACCACAACCCATTCTCAGCTGGACAATTTGAA...TGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR TCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGACGTCTATACATGCGTaGAACAAGTGTTTCAAATTG | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQTSIHA*NKCFKL Trigger: CAATTTGAAACACTTGTTTCACGCATGTATAGACGT...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR TCA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGGGCAGTGAGAAAGGTTaGACATTGCCAAAAATTTTT | + |
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Preference number: 4 (lower is better) Translates to: AIQLKASSQQWTVMDNCQGSEKG*TLPKIF Trigger: AAAAATTTTTGGCAATGTTCAACCTTTCTCACTGCC...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR CCA 90 bp | ATGCATTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGTTCAGGTCCATGAGCTaGTGGGTTTGTGACATTAGA | + |
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Preference number: 4 (lower is better) Translates to: MHSKAIQLKASSQQWTVMFRSMS*WVCDIR Trigger: TCTAATGTCACAAACCCACCAGCTCATGGACCTGAA...CATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAATGCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR TCA 90 bp | AAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCGGCAGTGAGAAAGGTTaGACATTGCCAAAAATTTTT | + |
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Preference number: 4 (lower is better) Translates to: KAIQLKASSQQWTVMDNCGSEKG*TLPKIF Trigger: AAAAATTTTTGGCAATGTTCAACCTTTCTCACTGCC...GCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR GCA 90 bp | TTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAAGATTCAGGGACATTTTaGATGTCACTTAGTACTTCC | + |
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Preference number: 4 (lower is better) Translates to: FKSYTIKSKFSAMDCHGQDSGTF*MSLSTS Trigger: GGAAGTACTAAGTGACATGCAAAATGTCCCTGAATC...TTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR CCA 90 bp | AGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCACACGTAAGGTCATCATaGATTTCTCTGAATTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: SYTIKSKFSAMDCHGQLPHVRSS*ISLNFN Trigger: ATTGAAATTCAGAGAAATCCATGATGACCTTACGTG...TGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR TCA 90 bp | TTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAAACGTCTATACATGCGTaGAACAAGTGTTTCAAATTG | + |
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Preference number: 4 (lower is better) Translates to: FKSYTIKSKFSAMDCHGQTSIHA*NKCFKL Trigger: CAATTTGAAACACTTGTTTCACGCATGTATAGACGT...TTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR TCA 90 bp | TTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAAGGCAGTGAGAAAGGTTaGACATTGCCAAAAATTTTT | + |
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Preference number: 4 (lower is better) Translates to: FKSYTIKSKFSAMDCHGQGSEKG*TLPKIF Trigger: AAAAATTTTTGGCAATGTTCAACCTTTCTCACTGCC...TTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR GCA 90 bp | AAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCTATGCGGCACATCAATaGACTGAGATGATATTTAAT | + |
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Preference number: 4 (lower is better) Translates to: KAIQLKASSQQWTVMDNCYAAHQ*TEMIFN Trigger: ATTAAATATCATCTCAGTGCATTGATGTGCCGCATA...GCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR GCA 90 bp | ATGCATTCAAAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGTATGCGGCACATCAATaGACTGAGATGATATTTAAT | + |
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Preference number: 4 (lower is better) Translates to: MHSKAIQLKASSQQWTVMYAAHQ*TEMIFN Trigger: ATTAAATATCATCTCAGTGCATTGATGTGCCGCATA...CATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTTTGAATGCAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 ENSMUST00000223918.2 |
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| CDS-3UTR CAA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGTTTGACATTCAGGAATaGATGCAGCTTTCTCCCACA | + |
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Preference number: 5 (lower is better) Translates to: AIQLKASSQQWTVMDNCQFDIQE*MQLSPT Trigger: TGTGGGAGAAAGCTGCATCAATTCCTGAATGTCAAA...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR CAA 90 bp | AGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCATTTGACATTCAGGAATaGATGCAGCTTTCTCCCACA | + |
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Preference number: 5 (lower is better) Translates to: SYTIKSKFSAMDCHGQLPFDIQE*MQLSPT Trigger: TGTGGGAGAAAGCTGCATCAATTCCTGAATGTCAAA...TGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR CAA 90 bp | GCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCAGGAGCTTTTGAGTAGATaGATTCAGGGACATTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: AIQLKASSQQWTVMDNCQELLSR*IQGHFA Trigger: TGCAAAATGTCCCTGAATCAATCTACTCAAAAGCTC...CTGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR CAA 90 bp | AGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCACTATCTCCTGAGCTTTaGAGTAGATTGATTCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: SYTIKSKFSAMDCHGQLPLSPEL*SRLIQG Trigger: TCCCTGAATCAATCTACTCAAAAGCTCAGGAGATAG...TGGCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS-3UTR CAA 90 bp | AAAGCTATACAATTAAAAGCAAGTTCTCAGCAATGGACTGTCATGGACAATTGCCTATCTCCTGAGCTTTaGAGTAGATTGATTCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: KAIQLKASSQQWTVMDNCLSPEL*SRLIQG Trigger: TCCCTGAATCAATCTACTCAAAAGCTCAGGAGATAG...GCAATTGTCCATGACAGTCCATTGCTGAGAACTTGCTTTTAATTGTATAGCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS CAA 90 bp | CAAGGGGATCTGAGCAGCCATTCTCTCCTGTTTGACATTCAGGAATaGATGCAGCTTTCTCCCACAGAAGCAAGTTTGAAACCACCAGCA | + |
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Preference number: 6 (lower is better) Translates to: QGDLSSHSLLFDIQE*MQLSPTEASLKPPA Trigger: TGCTGGTGGTTTCAAACTTGCTTCTGTGGGAGAAAGCTGCATCAATTCCTGAATGTCAAACAGGAGAGAATGGCTGCTCAGATCCCCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS TCA 72 bp | ATCACAAGGGGATCTGAGCAGCCATTCTCTCCTGTTTaGCATTCAGGAATTGATGCAGCTTTCTCCCACAGA | + |
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Preference number: 6 (lower is better) Translates to: ITRGSEQPFSPV*HSGIDAAFSHR Trigger: TCTGTGGGAGAAAGCTGCATCAATTCCTGAATGTCAAACAGGAGAGAATGGCTGCTCAGATCCCCTTGTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS TCA 72 bp | CTGAAGGGCATTCTTAAATGTGATCACAAGGGGATCTaGGCAGCCATTCTCTCCTGTTTGACATTCAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: LKGILKCDHKGI*AAILSCLTFRN Trigger: ATTCCTGAATGTCAAACAGGAGAGAATGGCTGCTCAGATCCCCTTGTGATCACATTTAAGAATGCCCTTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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| CDS CAA 72 bp | CTGAGCAGCCATTCTCTCCTGTTTGACATTCAGGAATaGATGCAGCTTTCTCCCACAGAAGCAAGTTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: LSSHSLLFDIQE*MQLSPTEASLK Trigger: TTTCAAACTTGCTTCTGTGGGAGAAAGCTGCATCAATTCCTGAATGTCAAACAGGAGAGAATGGCTGCTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018403.8 ENSMUST00000110363.9 |
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