Pregenerated sensors for PRL7A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046899Ensembl transcript IDs: ENSMUST00000006660.7
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACGTGATTCTGATGTTTTaGATTCTCCATTTGTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHVILMF*ILHLSV Trigger: GACAGACAAATGGAGAATCAAAAACATCAGAATCAC...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR TCA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACCAGCAGAAGTGCCCCTaGGGGGCATGGTTGAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHQQKCP*GAWLRE Trigger: TTCTCTCAACCATGCCCCTCAGGGGCACTTCTGCTG...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR TCA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACGGTTTTCTGGAGTTTTaGTGGAATAATTGTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHGFLEF*WNNCGS Trigger: GCTGCCACAATTATTCCATCAAAACTCCAGAAAACC...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR TCA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACTTCCTGGAATACTTCTaGGTGTGGTCAGTAGAACTT | + |
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Preference number: 4 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHFLEYF*VWSVEL Trigger: AAGTTCTACTGACCACACTCAGAAGTATTCCAGGAA...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR GCA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACAACCATCAGTCTCATTaGTACTCAAAGGTACAGAGG | + |
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Preference number: 4 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHNHQSH*YSKVQR Trigger: CCTCTGTACCTTTGAGTAGCAATGAGACTGATGGTT...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR TCA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACTTTCAGAGACTTGATTaGCTGTATATGTCTTGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHFQRLD*LYMSCA Trigger: TGCGCAAGACATATACAGTCAATCAAGTCTCTGAAA...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR CCA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACATCATCATGCATTCCTaGAATACTTCTGAGTGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHIIMHS*NTSECG Trigger: ACCACACTCAGAAGTATTCCAGGAATGCATGATGAT...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR TCA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACTTTTGGCTAATGAAATaGCATCATCATGCATTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHFWLMK*HHHAFL Trigger: CAGGAATGCATGATGATGTCATTTCATTAGCCAAAA...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR GCA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACGAAATGACATCATCATaGATTCCTGGAATACTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHEMTSS*IPGILL Trigger: CAGAAGTATTCCAGGAATGCATGATGATGTCATTTC...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR CCA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACTTCGTCCAGGTTTTCTaGAGTTTTGATGGAATAATT | + |
|
Preference number: 4 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHFVQVF*SFDGII Trigger: AATTATTCCATCAAAACTCCAGAAAACCTGGACGAA...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR CAA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACCAGCAGGTGAGAGCCTaGACCAGATACTCCATGTCC | + |
|
Preference number: 5 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHQQVRA*TRYSMS Trigger: GGACATGGAGTATCTGGTCAAGGCTCTCACCTGCTG...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR CAA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACCCCATAAAAGGAGGCTaGACACCACCACCAGCAGAA | + |
|
Preference number: 5 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHPIKGG*TPPPAE Trigger: TTCTGCTGGTGGTGGTGTCAAGCCTCCTTTTATGGG...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR CAA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACGTTAAAAGGAATCTGTaGAGCTTCGTCCAGGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHVKRNL*SFVQVF Trigger: GAAAACCTGGACGAAGCTCAACAGATTCCTTTTAAC...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR CAA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACTTGCGCAGTTCCATGTaGAGGTTTTTGATATTCCAA | + |
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Preference number: 5 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHLRSSM*RFLIFQ Trigger: TTGGAATATCAAAAACCTCAACATGGAACTGCGCAA...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR CAA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACCCACATTTCCTGTTGTaGTTGTTCCATAAATCGAGT | + |
|
Preference number: 5 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHPHFLL*LFHKSS Trigger: ACTCGATTTATGGAACAACAACAACAGGAAATGTGG...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR CAA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACTCCATGTTGAGGTTTTaGATATTCCAAGTTAGTCTC | + |
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Preference number: 5 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHSMLRF*IFQVSL Trigger: GAGACTAACTTGGAATATCAAAAACCTCAACATGGA...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS-3UTR CAA 90 bp | ACAGTGAATACATGTGACTTGTATATTAGGGGAAAGTCTTACAAATTGAACCACATTCCACATTTCCTGTaGTTGTTGTTCCATAAATCG | + |
|
Preference number: 5 (lower is better) Translates to: TVNTCDLYIRGKSYKLNHIPHFL*LLFHKS Trigger: CGATTTATGGAACAACAACAACAGGAAATGTGGAAT...GTGGTTCAATTTGTAAGACTTTCCCCTAATATACAAGTCACATGTATTCACTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS CCA 72 bp | TTCATTCCAAGCCCACATTCTACTGAGGATCAGCTTTaGAAATTCGTTAAAAGGAATCTGTTGAGCTTCGTC | + |
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Preference number: 6 (lower is better) Translates to: FIPSPHSTEDQL*KFVKRNLLSFV Trigger: GACGAAGCTCAACAGATTCCTTTTAACGAATTTCCAAAGCTGATCCTCAGTAGAATGTGGGCTTGGAATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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| CDS TCA 72 bp | CCACATTTCCTGTTGTTGTTGTTCCATAAATCGAGTTaGGTATACTCTGGGTGTACTCAAAAAGCTCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: PHFLLLLFHKSS*VYSGCTQKALQ Trigger: TTGCAGAGCTTTTTGAGTACACCCAGAGTATACTCAACTCGATTTATGGAACAACAACAACAGGAAATGTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006660.7 |
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