RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRL7A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006488

Ensembl transcript IDs: ENSMUST00000006659.8, ENSMUST00000095924.11, ENSMUST00000224852.2

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TTAATGTTACCCATTAATTCTGGGAATGTCTACCAAATATTGCTCTaGCAAAAGGACTATTTCAAATTTAATACCCATTGCAGCAGGCGT +
Preference number: 2 (lower is better)
Translates to: LMLPINSGNVYQILL*QKDYFKFNTHCSRR
Trigger: ACGCCTGCTGCAATGGGTATTAAATTTGAAATAGTCCTTTTGCAAGAGCAATATTTGGTAGACATTCCCAGAATTAATGGGTAACATTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
3UTR CCA 72 bp TCAATCACAGGAATGGATTTTCACATGTCTAGCACATaGTACTATAAATCTGTCAGCCATCTCCAAGTAAAA +
Preference number: 3 (lower is better)
Translates to: SITGMDFHMSST*YYKSVSHLQVK
Trigger: TTTTACTTGGAGATGGCTGACAGATTTATAGTACCATGTGCTAGACATGTGAAAATCCATTCCTGTGATTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS-3UTR CCA 90 bp TACCCATTAATTCTGGGAATGTCTACCAAATATTGCTCTTGCAAAAGGACTATTAAGTGCCCAGGAGCATaGTTGAGTGAAAGACAGCGG +
Preference number: 4 (lower is better)
Translates to: YPLILGMSTKYCSCKRTIKCPGA*LSERQR
Trigger: CCGCTGTCTTTCACTCAACCATGCTCCTGGGCACTT...AATAGTCCTTTTGCAAGAGCAATATTTGGTAGACATTCCCAGAATTAATGGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS-3UTR GCA 90 bp TGCTCTTGCAAAAGGACTATTTCAAATTTAATACCCATTGCAGCAGGCGTGGCACATCATCAGTATCATTaGTGCTTAAAGGTAGACAGG +
Preference number: 4 (lower is better)
Translates to: CSCKRTISNLIPIAAGVAHHQYH*CLKVDR
Trigger: CCTGTCTACCTTTAAGCAGCAATGATACTGATGATG...TGCCACGCCTGCTGCAATGGGTATTAAATTTGAAATAGTCCTTTTGCAAGAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS-3UTR TCA 90 bp GGAATATTTCACTCTGCTCAGAGCAATAAGTACGGTATAAAGTATACTGTGAGAAGTCTTCAAGAGAGATaGCATTTTGGGCTTCTTCTA +
Preference number: 4 (lower is better)
Translates to: GIFHSAQSNKYGIKYTVRSLQER*HFGLLL
Trigger: TAGAAGAAGCCCAAAATGTCATCTCTCTTGAAGACT...TCTCACAGTATACTTTATACCGTACTTATTGCTCTGAGCAGAGTGAAATATTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS-3UTR TCA 90 bp ATATTTCACTCTGCTCAGAGCAATAAGTACGGTATAAAGTATACTGTGAGAAAGAAGCCTGCATTCTACTaGGTATCAAGATTGGAAAGT +
Preference number: 4 (lower is better)
Translates to: IFHSAQSNKYGIKYTVRKKPAFY*VSRLES
Trigger: ACTTTCCAATCTTGATACTCAGTAGAATGCAGGCTT...CTTTCTCACAGTATACTTTATACCGTACTTATTGCTCTGAGCAGAGTGAAATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS-3UTR TCA 90 bp GGAATATTTCACTCTGCTCAGAGCAATAAGTACGGTATAAAGTATACTGTGAGATACCTTCAGATAGGTTaGTTCGGTTTTTCAGAGTTT +
Preference number: 4 (lower is better)
Translates to: GIFHSAQSNKYGIKYTVRYLQIG*FGFSEF
Trigger: AAACTCTGAAAAACCGAATCAACCTATCTGAAGGTA...TCTCACAGTATACTTTATACCGTACTTATTGCTCTGAGCAGAGTGAAATATTCC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS-3UTR CCA 90 bp ATATTTCACTCTGCTCAGAGCAATAAGTACGGTATAAAGTATACTGTGAGAAAGAGAGAGATGACATTTTaGGCTTCTTCTATGTCTTCG +
Preference number: 4 (lower is better)
Translates to: IFHSAQSNKYGIKYTVRKREMTF*ASSMSS
Trigger: CGAAGACATAGAAGAAGCCCAAAATGTCATCTCTCT...CTTTCTCACAGTATACTTTATACCGTACTTATTGCTCTGAGCAGAGTGAAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS-3UTR CAA 90 bp GAATGGATTTTCACATGTCTAGCACATGGTACTATAAATCTGTCAGCCATCTCCTGCCCAGGAGCATGGTaGAGTGAAAGACAGCGGCAT +
Preference number: 5 (lower is better)
Translates to: EWIFTCLAHGTINLSAISCPGAW*SERQRH
Trigger: ATGCCGCTGTCTTTCACTCAACCATGCTCCTGGGCA...GGAGATGGCTGACAGATTTATAGTACCATGTGCTAGACATGTGAAAATCCATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS TCA 90 bp AGAGGGTGTAATCAGCCACATTTTCTGTTGCTCCATAAGCCTGGCTaGGTATACTCTTGCTGTCCTCAAGAAGTTCTGCAATTTTTGTCT +
Preference number: 5 (lower is better)
Translates to: RGCNQPHFLLLHKPG*VYSCCPQEVLQFLS
Trigger: AGACAAAAATTGCAGAACTTCTTGAGGACAGCAAGAGTATACTCAGCCAGGCTTATGGAGCAACAGAAAATGTGGCTGATTACACCCTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
CDS-3UTR CAA 90 bp TTTCACTCTGCTCAGAGCAATAAGTACGGTATAAAGTATACTGTGAGAAAGATACCCATAAAAGGAGGTTaGACACCACCAGCAGCAGAA +
Preference number: 5 (lower is better)
Translates to: FHSAQSNKYGIKYTVRKIPIKGG*TPPAAE
Trigger: TTCTGCTGCTGGTGGTGTCAAACCTCCTTTTATGGG...TATCTTTCTCACAGTATACTTTATACCGTACTTATTGCTCTGAGCAGAGTGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS GCA 90 bp CCTTCAGATAGGTTGATTCGGTTTTTCAGAGTTTCATTCCAAGCCTaGATTCTACTGAGTATCAAGATTGGAAAGTCTTCAAGAGAGATG +
Preference number: 5 (lower is better)
Translates to: PSDRLIRFFRVSFQA*ILLSIKIGKSSREM
Trigger: CATCTCTCTTGAAGACTTTCCAATCTTGATACTCAGTAGAATGCAGGCTTGGAATGAAACTCTGAAAAACCGAATCAACCTATCTGAAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
ENSMUST00000224852.2
CDS CCA 90 bp CTACTGAGTATCAAGATTGGAAAGTCTTCAAGAGAGATGACATTTTaGGCTTCTTCTATGTCTTCGGGAACTTTGATGGAGTATTTGTGG +
Preference number: 5 (lower is better)
Translates to: LLSIKIGKSSREMTF*ASSMSSGTLMEYLW
Trigger: CCACAAATACTCCATCAAAGTTCCCGAAGACATAGAAGAAGCCCAAAATGTCATCTCTCTTGAAGACTTTCCAATCTTGATACTCAGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
ENSMUST00000224852.2
CDS-3UTR CAA 90 bp GAATGGATTTTCACATGTCTAGCACATGGTACTATAAATCTGTCAGCCATCTCCGTACCTTCAGATAGGTaGATTCGGTTTTTCAGAGTT +
Preference number: 5 (lower is better)
Translates to: EWIFTCLAHGTINLSAISVPSDR*IRFFRV
Trigger: AACTCTGAAAAACCGAATCAACCTATCTGAAGGTAC...GGAGATGGCTGACAGATTTATAGTACCATGTGCTAGACATGTGAAAATCCATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS-3UTR CAA 90 bp GGAATATTTCACTCTGCTCAGAGCAATAAGTACGGTATAAAGTATACTGTGAGAAAGAGAGATGACATTTaGGGCTTCTTCTATGTCTTC +
Preference number: 5 (lower is better)
Translates to: GIFHSAQSNKYGIKYTVRKRDDI*GFFYVF
Trigger: GAAGACATAGAAGAAGCCCAAAATGTCATCTCTCTT...TCTCACAGTATACTTTATACCGTACTTATTGCTCTGAGCAGAGTGAAATATTCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS-3UTR CAA 90 bp TACCCATTAATTCTGGGAATGTCTACCAAATATTGCTCTTGCAAAAGGACTATTTCATCATCAGTATCATaGCTGCTTAAAGGTAGACAG +
Preference number: 5 (lower is better)
Translates to: YPLILGMSTKYCSCKRTISSSVS*LLKGRQ
Trigger: CTGTCTACCTTTAAGCAGCAATGATACTGATGATGA...AATAGTCCTTTTGCAAGAGCAATATTTGGTAGACATTCCCAGAATTAATGGGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2
CDS GCA 72 bp ACCAGACCAGAGGGTGTAATCAGCCACATTTTCTGTTaGTCCATAAGCCTGGCTGAGTATACTCTTGCTGTC +
Preference number: 6 (lower is better)
Translates to: TRPEGVISHIFC*SISLAEYTLAV
Trigger: GACAGCAAGAGTATACTCAGCCAGGCTTATGGAGCAACAGAAAATGTGGCTGATTACACCCTCTGGTCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
CDS TCA 72 bp AATCAGCCACATTTTCTGTTGCTCCATAAGCCTGGCTaGGTATACTCTTGCTGTCCTCAAGAAGTTCTGCAA +
Preference number: 6 (lower is better)
Translates to: NQPHFLLLHKPG*VYSCCPQEVLQ
Trigger: TTGCAGAACTTCTTGAGGACAGCAAGAGTATACTCAGCCAGGCTTATGGAGCAACAGAAAATGTGGCTGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
CDS CAA 72 bp AGTCCCTTGATGGATAGTGGATCATCATCAGTATCATaGCTGCTTAAAGGTAGACAGGCCACATTCTCCCAT +
Preference number: 6 (lower is better)
Translates to: SPLMDSGSSSVS*LLKGRQATFSH
Trigger: ATGGGAGAATGTGGCCTGTCTACCTTTAAGCAGCAATGATACTGATGATGATCCACTATCCATCAAGGGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
ENSMUST00000224852.2
CDS TCA 72 bp TATCATCGTCTATTCCTGGTGTACCTTCAGATAGGTTaGTTCGGTTTTTCAGAGTTTCATTCCAAGCCTGCA +
Preference number: 6 (lower is better)
Translates to: YHRLFLVYLQIG*FGFSEFHSKPA
Trigger: TGCAGGCTTGGAATGAAACTCTGAAAAACCGAATCAACCTATCTGAAGGTACACCAGGAATAGACGATGATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
ENSMUST00000224852.2
CDS TCA 72 bp TTTACAAAGAGCCAAAAATCGAGTTTCTTCATCAGATaGTTGAAGGTCTTCAAGACCAGACCAGAGGGTGTA +
Preference number: 6 (lower is better)
Translates to: FTKSQKSSFFIR*LKVFKTRPEGV
Trigger: TACACCCTCTGGTCTGGTCTTGAAGACCTTCAATCATCTGATGAAGAAACTCGATTTTTGGCTCTTTGTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
CDS CAA 90 bp TCTACTGAGTATCAAGATTGGAAAGTCTTCAAGAGAGATGACATTTaGGGCTTCTTCTATGTCTTCGGGAACTTTGATGGAGTATTTGTG +
Preference number: 6 (lower is better)
Translates to: STEYQDWKVFKRDDI*GFFYVFGNFDGVFV
Trigger: CACAAATACTCCATCAAAGTTCCCGAAGACATAGAAGAAGCCCAAAATGTCATCTCTCTTGAAGACTTTCCAATCTTGATACTCAGTAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
ENSMUST00000224852.2
CDS GCA 72 bp AGGTTGATTCGGTTTTTCAGAGTTTCATTCCAAGCCTaGATTCTACTGAGTATCAAGATTGGAAAGTCTTCA +
Preference number: 6 (lower is better)
Translates to: RLIRFFRVSFQA*ILLSIKIGKSS
Trigger: TGAAGACTTTCCAATCTTGATACTCAGTAGAATGCAGGCTTGGAATGAAACTCTGAAAAACCGAATCAACCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
ENSMUST00000224852.2
CDS CAA 72 bp TATCAAGATTGGAAAGTCTTCAAGAGAGATGACATTTaGGGCTTCTTCTATGTCTTCGGGAACTTTGATGGA +
Preference number: 6 (lower is better)
Translates to: YQDWKVFKRDDI*GFFYVFGNFDG
Trigger: TCCATCAAAGTTCCCGAAGACATAGAAGAAGCCCAAAATGTCATCTCTCTTGAAGACTTTCCAATCTTGATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006659.8
ENSMUST00000095924.11
ENSMUST00000224852.2
CDS CAA 72 bp AAAGTAAAATCACTACTCACCTGGCTGAGTATACTCTaGCTGTCCTCAAGAAGTTCTGCAATTTTTGTCTCA +
Preference number: 6 (lower is better)
Translates to: KVKSLLTWLSIL*LSSRSSAIFVS
Trigger: TGAGACAAAAATTGCAGAACTTCTTGAGGACAGCAAGAGTATACTCAGCCAGGTGAGTAGTGATTTTACTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224852.2