Pregenerated sensors for PRL6A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069259Ensembl transcript IDs: ENSMUST00000091679.4, ENSMUST00000091680.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CACAAGGAATACACCCGGCATCTGTCGGGCTCCCTCCTTAGACACTaGAATAGTCAATGTAGATGTGTGGCAGGCAGTAAGGTATCTGTC | + |
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Preference number: 5 (lower is better) Translates to: HKEYTRHLSGSLLRH*NSQCRCVAGSKVSV Trigger: GACAGATACCTTACTGCCTGCCACACATCTACATTGACTATTTCAGTGTCTAAGGAGGGAGCCCGACAGATGCCGGGTGTATTCCTTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 90 bp | TGTCGGGCTCCCTCCTTAGACACTGAAATAGTCAATGTAGATGTGTaGCAGGCAGTAAGGTATCTGTCAGAGAACCACCTGCCTGGTTTA | + |
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Preference number: 5 (lower is better) Translates to: CRAPSLDTEIVNVDV*QAVRYLSENHLPGL Trigger: TAAACCAGGCAGGTGGTTCTCTGACAGATACCTTACTGCCTGCCACACATCTACATTGACTATTTCAGTGTCTAAGGAGGGAGCCCGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 90 bp | GGTCATATATGGACATCTCACCATATTCATCCAAACTGGCATACATaGGCACAGGGGCCACATTCTTCCACAGAAGGAAGTTTGATGCCA | + |
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Preference number: 5 (lower is better) Translates to: GHIWTSHHIHPNWHT*AQGPHSSTEGSLMP Trigger: TGGCATCAAACTTCCTTCTGTGGAAGAATGTGGCCCCTGTGCCCATGTATGCCAGTTTGGATGAATATGGTGAGATGTCCATATATGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 90 bp | GATCAAGCAGGTCATATATGGACATCTCACCATATTCATCCAAACTaGCATACATGGGCACAGGGGCCACATTCTTCCACAGAAGGAAGT | + |
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Preference number: 5 (lower is better) Translates to: DQAGHIWTSHHIHPN*HTWAQGPHSSTEGS Trigger: ACTTCCTTCTGTGGAAGAATGTGGCCCCTGTGCCCATGTATGCCAGTTTGGATGAATATGGTGAGATGTCCATATATGACCTGCTTGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 90 bp | AGATGTGTGGCAGGCAGTAAGGTATCTGTCAGAGAACCACCTGCCTaGTTTATATCGCACATCCTCCATAAATATCCTGTGCATTTCTGC | + |
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Preference number: 5 (lower is better) Translates to: RCVAGSKVSVREPPA*FISHILHKYPVHFC Trigger: GCAGAAATGCACAGGATATTTATGGAGGATGTGCGATATAAACCAGGCAGGTGGTTCTCTGACAGATACCTTACTGCCTGCCACACATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS TCA 90 bp | CAGTTATTATGTGATACAGAGGATATCTCCAAGCTGTCAACATACTaGTCATCTCTTTCACAAGGAATACACCCGGCATCTGTCGGGCTC | + |
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Preference number: 5 (lower is better) Translates to: QLLCDTEDISKLSTY*SSLSQGIHPASVGL Trigger: GAGCCCGACAGATGCCGGGTGTATTCCTTGTGAAAGAGATGATCAGTATGTTGACAGCTTGGAGATATCCTCTGTATCACATAATAACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 90 bp | CGTGAATCCTTGACCAAGCACTGGAATAAGTTAAATAATGTAAGATaGCGAAGGTCTTCATCAGGTGACTGCAAGGATGCCAGTTCATTC | + |
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Preference number: 5 (lower is better) Translates to: RESLTKHWNKLNNVR*RRSSSGDCKDASSF Trigger: GAATGAACTGGCATCCTTGCAGTCACCTGATGAAGACCTTCGCCATCTTACATTATTTAACTTATTCCAGTGCTTGGTCAAGGATTCACG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CAA 72 bp | TGGGCACAGGGGCCACATTCTTCCACAGAAGGAAGTTaGATGCCAACAGCATCAGGAGAGTCCCTGAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: WAQGPHSSTEGS*MPTASGESLRS Trigger: GCTTCTCAGGGACTCTCCTGATGCTGTTGGCATCAAACTTCCTTCTGTGGAAGAATGTGGCCCCTGTGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091680.9 |
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| CDS TCA 72 bp | GGGCACAGGGGCCACATTCTTCCACAGAAGGAAGTTTaGTGCCAACAGCATCAGGAGAGTCCCTGCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: GHRGHILPQKEV*CQQHQESPCFF Trigger: AAAGAAGCAGGGACTCTCCTGATGCTGTTGGCATCAAACTTCCTTCTGTGGAAGAATGTGGCCCCTGTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091679.4 |
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| CDS CAA 90 bp | TGGCATACATGGGCACAGGGGCCACATTCTTCCACAGAAGGAAGTTaGATGCCAACAGCATCAGGAGAGTCCCTGAGAAGCAAGGTTGAC | + |
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Preference number: 6 (lower is better) Translates to: WHTWAQGPHSSTEGS*MPTASGESLRSKVD Trigger: GTCAACCTTGCTTCTCAGGGACTCTCCTGATGCTGTTGGCATCAAACTTCCTTCTGTGGAAGAATGTGGCCCCTGTGCCCATGTATGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091680.9 |
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| CDS CCA 72 bp | TGCCAGTTCATTCCACACGGGATATCTCTCATTTTCTaGGGGTCCAGGCTGAATCTTGCTGAGTATCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: CQFIPHGISLIF*GSRLNLAEYPS Trigger: AGAGGGATACTCAGCAAGATTCAGCCTGGACCCCCAGAAAATGAGAGATATCCCGTGTGGAATGAACTGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 72 bp | TGGACATCTCACCATATTCATCCAAACTGGCATACATaGGCACAGGGGCCACATTCTTCCACAGAAGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: WTSHHIHPNWHT*AQGPHSSTEGS Trigger: ACTTCCTTCTGTGGAAGAATGTGGCCCCTGTGCCCATGTATGCCAGTTTGGATGAATATGGTGAGATGTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 72 bp | GGTCATATATGGACATCTCACCATATTCATCCAAACTaGCATACATGGGCACAGGGGCCACATTCTTCCACA | + |
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Preference number: 6 (lower is better) Translates to: GHIWTSHHIHPN*HTWAQGPHSST Trigger: TGTGGAAGAATGTGGCCCCTGTGCCCATGTATGCCAGTTTGGATGAATATGGTGAGATGTCCATATATGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 72 bp | GCAGGCAGTAAGGTATCTGTCAGAGAACCACCTGCCTaGTTTATATCGCACATCCTCCATAAATATCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: AGSKVSVREPPA*FISHILHKYPV Trigger: CACAGGATATTTATGGAGGATGTGCGATATAAACCAGGCAGGTGGTTCTCTGACAGATACCTTACTGCCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 72 bp | CCCTCCTTAGACACTGAAATAGTCAATGTAGATGTGTaGCAGGCAGTAAGGTATCTGTCAGAGAACCACCTG | + |
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Preference number: 6 (lower is better) Translates to: PSLDTEIVNVDV*QAVRYLSENHL Trigger: CAGGTGGTTCTCTGACAGATACCTTACTGCCTGCCACACATCTACATTGACTATTTCAGTGTCTAAGGAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS TCA 72 bp | TGTGATACAGAGGATATCTCCAAGCTGTCAACATACTaGTCATCTCTTTCACAAGGAATACACCCGGCATCT | + |
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Preference number: 6 (lower is better) Translates to: CDTEDISKLSTY*SSLSQGIHPAS Trigger: AGATGCCGGGTGTATTCCTTGTGAAAGAGATGATCAGTATGTTGACAGCTTGGAGATATCCTCTGTATCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CCA 72 bp | TTGACCAAGCACTGGAATAAGTTAAATAATGTAAGATaGCGAAGGTCTTCATCAGGTGACTGCAAGGATGCC | + |
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Preference number: 6 (lower is better) Translates to: LTKHWNKLNNVR*RRSSSGDCKDA Trigger: GGCATCCTTGCAGTCACCTGATGAAGACCTTCGCCATCTTACATTATTTAACTTATTCCAGTGCTTGGTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CAA 90 bp | TTGCACTTCAAAAGCCTGATACTAGAGTCAATCTTACGTGAATCCTaGACCAAGCACTGGAATAAGTTAAATAATGTAAGATGGCGAAGG | + |
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Preference number: 6 (lower is better) Translates to: LHFKSLILESILRES*TKHWNKLNNVRWRR Trigger: CCTTCGCCATCTTACATTATTTAACTTATTCCAGTGCTTGGTCAAGGATTCACGTAAGATTGACTCTAGTATCAGGCTTTTGAAGTGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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| CDS CAA 72 bp | AAAAGCCTGATACTAGAGTCAATCTTACGTGAATCCTaGACCAAGCACTGGAATAAGTTAAATAATGTAAGA | + |
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Preference number: 6 (lower is better) Translates to: KSLILESILRES*TKHWNKLNNVR Trigger: TCTTACATTATTTAACTTATTCCAGTGCTTGGTCAAGGATTCACGTAAGATTGACTCTAGTATCAGGCTTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091679.4 ENSMUST00000091680.9 |
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