Pregenerated sensors for PRL5A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017064Ensembl transcript IDs: ENSMUST00000017208.5
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGGACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATAGAACTTTTTAAGGATTaGATCAGTATGGACTGCCCC | + |
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Preference number: 2 (lower is better) Translates to: GTMGSKQWVEGRRSGVIIELFKD*ISMDCP Trigger: GGGGCAGTCCATACTGATCCAATCCTTAAAAAGTTC...TATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR TCA 90 bp | GGGACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATAGAGCGGGATGAAGTGTaGCAGGTCATGGTGGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: GTMGSKQWVEGRRSGVIIERDEV*QVMVGL Trigger: CAGGCCCACCATGACCTGTCACACTTCATCCCGCTC...TATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR TCA 90 bp | GGGACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATGGGACAGAGCGGGATaGAGTGTGACAGGTCATGGT | + |
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Preference number: 4 (lower is better) Translates to: GTMGSKQWVEGRRSGVIIWDRAG*SVTGHG Trigger: ACCATGACCTGTCACACTTCATCCCGCTCTGTCCCA...TATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR TCA 90 bp | GGGACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATAAACCTCCATCTTCCATaGTACATCTGGGCACAGAGG | + |
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Preference number: 4 (lower is better) Translates to: GTMGSKQWVEGRRSGVIINLHLP*YIWAQR Trigger: CCTCTGTGCCCAGATGTATCATGGAAGATGGAGGTT...TATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR TCA 90 bp | GGGACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATACAGCAGAAGTGTCCCTaGTTGGTGTGGTTGAATCTT | + |
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Preference number: 4 (lower is better) Translates to: GTMGSKQWVEGRRSGVIIQQKCP*LVWLNL Trigger: AAGATTCAACCACACCAATCAGGGACACTTCTGCTG...TATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR CCA 90 bp | GGGACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATGTGACAGGTCATGGTaGGCCTGTTCTGGAATTTCT | + |
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Preference number: 4 (lower is better) Translates to: GTMGSKQWVEGRRSGVIICDRSW*ACSGIS Trigger: AGAAATTCCAGAACAGGCCCACCATGACCTGTCACA...TATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR CCA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTATGGTGGGCCTGTTCTaGAATTTCTGGTGGGGATCA | + |
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Preference number: 4 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFMVGLF*NFWWGS Trigger: TGATCCCCACCAGAAATTCCAGAACAGGCCCACCAT...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR GCA 90 bp | GGGACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATAACTCTCCTTTTTGATTaGTGTACATATGGCTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GTMGSKQWVEGRRSGVIITLLFD*CTYGSP Trigger: AGGAGAGCCATATGTACAGCAATCAAAAAGGAGAGT...TATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGTCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR TCA 90 bp | GGGACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATGCAAACCAAAAAGTTaGACTCTCCTTTTTGATTGC | + |
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Preference number: 4 (lower is better) Translates to: GTMGSKQWVEGRRSGVIICKPKS*TLLFDC Trigger: GCAATCAAAAAGGAGAGTTCAACTTTTTGGTTTGCA...TATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGTCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR TCA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTCTGAAGAAAGGTTGTTaGAGTTCTCAGATATGGTGC | + |
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Preference number: 4 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFLKKGC*SSQIWC Trigger: GCACCATATCTGAGAACTTCAACAACCTTTCTTCAG...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR TCA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTTTGAACTCTCCTTTTTaGTTGCTGTACATATGGCTC | + |
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Preference number: 4 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFLNSPF*LLYIWL Trigger: GAGCCATATGTACAGCAATCAAAAAGGAGAGTTCAA...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR CCA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTTTCTGGAATTTCTGGTaGGGATCATACTCTGTATCA | + |
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Preference number: 4 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFFWNFW*GSYSVS Trigger: TGATACAGAGTATGATCCCCACCAGAAATTCCAGAA...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR GCA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTATCAGAAACCTTCTGTaGATCATTGTTCAAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFIRNLL*IIVQAE Trigger: TTCTGCTTGAACAATGATGCACAGAAGGTTTCTGAT...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR CCA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTATGTTGTTTTCTACATaGTGCAGAAGGTTTTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFMLFST*CRRFFQ Trigger: CTGGAAAAACCTTCTGCACCATGTAGAAAACAACAT...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS TCA 90 bp | CCGCATTCTTTCAGCCTTCCTTTTGTTGTTTGGGACAGAGCGGGATaGAGTGTGACAGGTCATGGTGGGCCTGTTCTGGAATTTCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: PHSFSLPFVVWDRAG*SVTGHGGPVLEFLV Trigger: CACCAGAAATTCCAGAACAGGCCCACCATGACCTGTCACACTTCATCCCGCTCTGTCCCAAACAACAAAAGGAAGGCTGAAAGAATGCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR CAA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTCTTTCAGCCTTCCTTTaGTTGTTTGGGACAGAGCGG | + |
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Preference number: 5 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFLSAFL*LFGTER Trigger: CCGCTCTGTCCCAAACAACAAAAGGAAGGCTGAAAG...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR CAA 90 bp | GGGACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTGATTAGGCACAATTaGGTCTCTCAGGATACTGAT | + |
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Preference number: 5 (lower is better) Translates to: GTMGSKQWVEGRRSGVIILIRHN*VSQDTD Trigger: ATCAGTATCCTGAGAGACCAAATTGTGCCTAATCAA...TATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGTCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR CAA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTTCTGAAGAAAGGTTGTaGAAGTTCTCAGATATGGTG | + |
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Preference number: 5 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFSEERL*KFSDMV Trigger: CACCATATCTGAGAACTTCAACAACCTTTCTTCAGA...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR CAA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTGTTGAACTCTCCTTTTaGATTGCTGTACATATGGCT | + |
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Preference number: 5 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFVELSF*IAVHMA Trigger: AGCCATATGTACAGCAATCAAAAAGGAGAGTTCAAC...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS-3UTR CAA 90 bp | ACAATGGGTAGCAAGCAGTGGGTAGAGGGAAGGAGAAGTGGTGTAATTATATTTGTTTCTGAAGAAAGGTaGTTGAAGTTCTCAGATATG | + |
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Preference number: 5 (lower is better) Translates to: TMGSKQWVEGRRSGVIIFVSEER*LKFSDM Trigger: CATATCTGAGAACTTCAACAACCTTTCTTCAGAAAC...AAATATAATTACACCACTTCTCCTTCCCTCTACCCACTGCTTGCTACCCATTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS CAA 90 bp | TCAGAAGCACCACAGGCCGCATTCTTTCAGCCTTCCTTTTGTTGTTaGGGACAGAGCGGGATGAAGTGTGACAGGTCATGGTGGGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: SEAPQAAFFQPSFCC*GQSGMKCDRSWWAC Trigger: ACAGGCCCACCATGACCTGTCACACTTCATCCCGCTCTGTCCCAAACAACAAAAGGAAGGCTGAAAGAATGCGGCCTGTGGTGCTTCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS CCA 72 bp | TTGGGACAGAGCGGGATGAAGTGTGACAGGTCATGGTaGGCCTGTTCTGGAATTTCTGGTGGGGATCATACT | + |
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Preference number: 6 (lower is better) Translates to: LGQSGMKCDRSW*ACSGISGGDHT Trigger: AGTATGATCCCCACCAGAAATTCCAGAACAGGCCCACCATGACCTGTCACACTTCATCCCGCTCTGTCCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS CAA 72 bp | CCACAGGCCGCATTCTTTCAGCCTTCCTTTTGTTGTTaGGGACAGAGCGGGATGAAGTGTGACAGGTCATGG | + |
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Preference number: 6 (lower is better) Translates to: PQAAFFQPSFCC*GQSGMKCDRSW Trigger: CCATGACCTGTCACACTTCATCCCGCTCTGTCCCAAACAACAAAAGGAAGGCTGAAAGAATGCGGCCTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS TCA 72 bp | TTCAGCCTTCCTTTTGTTGTTTGGGACAGAGCGGGATaGAGTGTGACAGGTCATGGTGGGCCTGTTCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: FSLPFVVWDRAG*SVTGHGGPVLE Trigger: TTCCAGAACAGGCCCACCATGACCTGTCACACTTCATCCCGCTCTGTCCCAAACAACAAAAGGAAGGCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS CAA 72 bp | ACAAACTATGCAAACCAAAAAGTTGAACTCTCCTTTTaGATTGCTGTACATATGGCTCTCCTGACCAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: TNYANQKVELSF*IAVHMALLTRQ Trigger: CTGCCTGGTCAGGAGAGCCATATGTACAGCAATCAAAAAGGAGAGTTCAACTTTTTGGTTTGCATAGTTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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| CDS GCA 72 bp | GTCTCTCAGGATACTGATGAAATCAGAAACCTTCTGTaGATCATTGTTCAAGCAGAAAAACAAACTATGCAA | + |
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Preference number: 6 (lower is better) Translates to: VSQDTDEIRNLL*IIVQAEKQTMQ Trigger: TTGCATAGTTTGTTTTTCTGCTTGAACAATGATGCACAGAAGGTTTCTGATTTCATCAGTATCCTGAGAGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017208.5 |
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