Pregenerated sensors for PRL4A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005891Ensembl transcript IDs: ENSMUST00000021779.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGTTCGATGGTACAGAGGGTTaGCCCAGGCTTGCAGTAGAC | + |
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Preference number: 4 (lower is better) Translates to: YTSALSRMITGTEGCYVFDGTEG*PRLAVD Trigger: GTCTACTGCAAGCCTGGGTCAACCCTCTGTACCATC...GAACACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CCA 90 bp | CTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGCCCACAGAAGCAGGTTaGACACTAGCAGCAAGAGTA | + |
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Preference number: 4 (lower is better) Translates to: LYTSALSRMITGTEGCYVPTEAG*TLAARV Trigger: TACTCTTGCTGCTAGTGTCCAACCTGCTTCTGTGGG...CACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CCA 90 bp | TGTACTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTAGAGAGGGAAGAAGTGTaGCATCTGGTGGTCCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: CTLHKCIVENDHWDRRMLEREEV*HLVVLF Trigger: AAAGAGGACCACCAGATGCCACACTTCTTCCCTCTC...TAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAGTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR TCA 90 bp | ACTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGATAACTGGATTGCCTaGTTCCACGTGTTCCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: TLHKCIVENDHWDRRMLCDNWIA*FHVFPK Trigger: CTTTGGGAACACGTGGAATCAGGCAATCCAGTTATC...ACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CCA 90 bp | CTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGAAGTGTGGCATCTGGTaGTCCTCTTTTCAAATCCTC | + |
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Preference number: 4 (lower is better) Translates to: LYTSALSRMITGTEGCYVKCGIW*SSFQIL Trigger: GAGGATTTGAAAAGAGGACCACCAGATGCCACACTT...CACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR TCA 90 bp | ACTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGTGAGTGGACAGTTCTaGAATTCGGTGATTCATGCT | + |
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Preference number: 4 (lower is better) Translates to: TLHKCIVENDHWDRRMLCVSGQF*NSVIHA Trigger: AGCATGAATCACCGAATTTCAGAACTGTCCACTCAC...ACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR TCA 90 bp | ACTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTAGTGTCTCTATTGGGTaGCTGCAAGAGTTCCAATTC | + |
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Preference number: 4 (lower is better) Translates to: TLHKCIVENDHWDRRMLCSVSIG*LQEFQF Trigger: GAATTGGAACTCTTGCAGTCACCCAATAGAGACACT...ACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR GCA 90 bp | CTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGTCTCTATTGGGTGACTaGAAGAGTTCCAATTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: LYTSALSRMITGTEGCYVSLLGD*KSSNSD Trigger: GTCTGAATTGGAACTCTTGCAGTCACCCAATAGAGA...CACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CCA 90 bp | TACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGTTCAGGCAATCTTCTCTATaGTCTCCAGGAGATTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: YTSALSRMITGTEGCYVFRQSSL*SPGDFC Trigger: ACAGAAATCTCCTGGAGACCATAGAGAAGATTGCCT...GAACACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR GCA 90 bp | TACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGTTCAAATTCGGTGATTCATaGTCTGGGATAACTGGATTG | + |
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Preference number: 4 (lower is better) Translates to: YTSALSRMITGTEGCYVFKFGDS*SGITGL Trigger: CAATCCAGTTATCCCAGAGCATGAATCACCGAATTT...GAACACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CCA 90 bp | TTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGTTAAGAAGTGTGGCATCTaGTGGTCCTCTTTTCAAATC | + |
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Preference number: 4 (lower is better) Translates to: LHKCIVENDHWDRRMLCVKKCGI*WSSFQI Trigger: GATTTGAAAAGAGGACCACCAGATGCCACACTTCTT...AACACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CCA 90 bp | TGTACTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTAAGCAGTACTTCCAGTTaGATCTTTTGGGCTTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: CTLHKCIVENDHWDRRMLSSTSS*IFWACS Trigger: AGAACAAGCCCAAAAGATCCAACTGGAAGTACTGCT...TAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAGTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| 3UTR CAA 72 bp | CAGAGCCATTATACTCATGTACTTTACACAAGTGCATaGTCGAGAATGATCACTGGGACAGAAGGATGTTAT | + |
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Preference number: 4 (lower is better) Translates to: QSHYTHVLYTSA*SRMITGTEGCY Trigger: ATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAGTACATGAGTATAATGGCTCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CCA 90 bp | TGTACTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATCCAGTTGGATCTTTTaGGCTTGTTCTTTGTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: CTLHKCIVENDHWDRRMLSSWIF*ACSLFS Trigger: AGAAAACAAAGAACAAGCCCAAAAGATCCAACTGGA...TAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAGTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS TCA 90 bp | ATCCCAGCCTTTCACACATTTCAGCCCACAGATGGTACAGAGGGTTaGCCCAGGCTTGCAGTAGACTGTGTGCCAACCCCAGCAGTACTT | + |
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Preference number: 5 (lower is better) Translates to: IPAFHTFQPTDGTEG*PRLAVDCVPTPAVL Trigger: AAGTACTGCTGGGGTTGGCACACAGTCTACTGCAAGCCTGGGTCAACCCTCTGTACCATCTGTGGGCTGAAATGTGTGAAAGGCTGGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS CCA 90 bp | ATAGGAGGAGTGGATCCCAGCCTTTCACACATTTCAGCCCACAGATaGTACAGAGGGTTGACCCAGGCTTGCAGTAGACTGTGTGCCAAC | + |
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Preference number: 5 (lower is better) Translates to: IGGVDPSLSHISAHR*YRGLTQACSRLCAN Trigger: GTTGGCACACAGTCTACTGCAAGCCTGGGTCAACCCTCTGTACCATCTGTGGGCTGAAATGTGTGAAAGGCTGGGATCCACTCCTCCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CAA 90 bp | ACTTTACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTCAGCAGTACTTCCAGTaGGATCTTTTGGGCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: TLHKCIVENDHWDRRMLCQQYFQ*DLLGLF Trigger: GAACAAGCCCAAAAGATCCAACTGGAAGTACTGCTG...ACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CAA 90 bp | ACTTTTAAAGAACAGAGCCATTATACTCATGTACTTTACACAAGTGCATTGTCGTGTCCAGGAGGACCATaGCGGAGTCAAAGACAGATG | + |
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Preference number: 5 (lower is better) Translates to: TFKEQSHYTHVLYTSALSCPGGP*RSQRQM Trigger: CATCTGTCTTTGACTCCGCAATGGTCCTCCTGGACA...CGACAATGCACTTGTGTAAAGTACATGAGTATAATGGCTCTGTTCTTTAAAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CAA 90 bp | ACTTTTAAAGAACAGAGCCATTATACTCATGTACTTTACACAAGTGCATTGTCGTCTGGGATAACTGGATaGCCTGATTCCACGTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: TFKEQSHYTHVLYTSALSSGITG*PDSTCS Trigger: GGAACACGTGGAATCAGGCAATCCAGTTATCCCAGA...CGACAATGCACTTGTGTAAAGTACATGAGTATAATGGCTCTGTTCTTTAAAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CAA 90 bp | TACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGTTCTTCCAGTTGGATCTTTaGGGCTTGTTCTTTGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: YTSALSRMITGTEGCYVFFQLDL*GLFFVF Trigger: GAAAACAAAGAACAAGCCCAAAAGATCCAACTGGAA...GAACACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CAA 90 bp | TACACAAGTGCATTGTCGAGAATGATCACTGGGACAGAAGGATGTTATGTGTTCTTCAAATCCTCGGCCTaGGGCATAAAATACTTTAAA | + |
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Preference number: 5 (lower is better) Translates to: YTSALSRMITGTEGCYVFFKSSA*GIKYFK Trigger: TTTAAAGTATTTTATGCCCAAGGCCGAGGATTTGAA...GAACACATAACATCCTTCTGTCCCAGTGATCATTCTCGACAATGCACTTGTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS-3UTR CAA 90 bp | ACTTTTAAAGAACAGAGCCATTATACTCATGTACTTTACACAAGTGCATTGTCGTTGGATCTTTTGGGCTaGTTCTTTGTTTTCTGGACT | + |
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Preference number: 5 (lower is better) Translates to: TFKEQSHYTHVLYTSALSLDLLG*FFVFWT Trigger: AGTCCAGAAAACAAAGAACAAGCCCAAAAGATCCAA...CGACAATGCACTTGTGTAAAGTACATGAGTATAATGGCTCTGTTCTTTAAAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS CAA 90 bp | GATCCCAGCCTTTCACACATTTCAGCCCACAGATGGTACAGAGGGTaGACCCAGGCTTGCAGTAGACTGTGTGCCAACCCCAGCAGTACT | + |
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Preference number: 6 (lower is better) Translates to: DPSLSHISAHRWYRG*TQACSRLCANPSST Trigger: AGTACTGCTGGGGTTGGCACACAGTCTACTGCAAGCCTGGGTCAACCCTCTGTACCATCTGTGGGCTGAAATGTGTGAAAGGCTGGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS CCA 72 bp | GTGGATCCCAGCCTTTCACACATTTCAGCCCACAGATaGTACAGAGGGTTGACCCAGGCTTGCAGTAGACTG | + |
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Preference number: 6 (lower is better) Translates to: VDPSLSHISAHR*YRGLTQACSRL Trigger: CAGTCTACTGCAAGCCTGGGTCAACCCTCTGTACCATCTGTGGGCTGAAATGTGTGAAAGGCTGGGATCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS CAA 72 bp | CTTTCACACATTTCAGCCCACAGATGGTACAGAGGGTaGACCCAGGCTTGCAGTAGACTGTGTGCCAACCCC | + |
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Preference number: 6 (lower is better) Translates to: LSHISAHRWYRG*TQACSRLCANP Trigger: GGGGTTGGCACACAGTCTACTGCAAGCCTGGGTCAACCCTCTGTACCATCTGTGGGCTGAAATGTGTGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS TCA 72 bp | TTTCACACATTTCAGCCCACAGATGGTACAGAGGGTTaGCCCAGGCTTGCAGTAGACTGTGTGCCAACCCCA | + |
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Preference number: 6 (lower is better) Translates to: FHTFQPTDGTEG*PRLAVDCVPTP Trigger: TGGGGTTGGCACACAGTCTACTGCAAGCCTGGGTCAACCCTCTGTACCATCTGTGGGCTGAAATGTGTGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS CAA 72 bp | CTCATAGCAGAAGCTGTGTTCTCCCACAGAAGCAGGTaGGACACTAGCAGCAAGAGTACTGTCCAGGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: LIAEAVFSHRSR*DTSSKSTVQED Trigger: GTCCTCCTGGACAGTACTCTTGCTGCTAGTGTCCAACCTGCTTCTGTGGGAGAACACAGCTTCTGCTATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS CAA 72 bp | GTGTGCCAACCCCAGCAGTACTTCCAGTTGGATCTTTaGGGCTTGTTCTTTGTTTTCTGGACTAGAGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: VCQPQQYFQLDL*GLFFVFWTREG Trigger: TCCCTCTCTAGTCCAGAAAACAAAGAACAAGCCCAAAAGATCCAACTGGAAGTACTGCTGGGGTTGGCACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS CCA 72 bp | TGTTCTTTGTTTTCTGGACTAGAGAGGGAAGAAGTGTaGCATCTGGTGGTCCTCTTTTCAAATCCTCGGCCT | + |
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Preference number: 6 (lower is better) Translates to: CSLFSGLEREEV*HLVVLFSNPRP Trigger: AGGCCGAGGATTTGAAAAGAGGACCACCAGATGCCACACTTCTTCCCTCTCTAGTCCAGAAAACAAAGAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS CAA 72 bp | CTGAAATTCGGTGATTCATGCTCTGGGATAACTGGATaGCCTGATTCCACGTGTTCCCAAAGGTTGTGTAGT | + |
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Preference number: 6 (lower is better) Translates to: LKFGDSCSGITG*PDSTCSQRLCS Trigger: ACTACACAACCTTTGGGAACACGTGGAATCAGGCAATCCAGTTATCCCAGAGCATGAATCACCGAATTTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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| CDS CAA 72 bp | GTGGCATCTGGTGGTCCTCTTTTCAAATCCTCGGCCTaGGGCATAAAATACTTTAAAGTGAGTGGACAGTTC | + |
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Preference number: 6 (lower is better) Translates to: VASGGPLFKSSA*GIKYFKVSGQF Trigger: GAACTGTCCACTCACTTTAAAGTATTTTATGCCCAAGGCCGAGGATTTGAAAAGAGGACCACCAGATGCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021779.8 |
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