Pregenerated sensors for PRL3D3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062201

Ensembl transcript IDs: ENSMUST00000073601.5, ENSMUST00000223958.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	GGAAAGCATTACAAGTCTGGATCAACAAAGACCATGTGGGCAGGGCTTTGCTGGCTTCAGTGGGCACCATaGCAGTTGGTTTGGAGGACA	+
Preference number: 4 (lower is better) Translates to: GKHYKSGSTKTMWAGLCWLQWAP*QLVWRT Trigger: TGTCCTCCAAACCAACTGCCATGGTGCCCACTGAAG...CCAGCAAAGCCCTGCCCACATGGTCTTTGTTGATCCAGACTTGTAATGCTTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS-3UTR CCA 90 bp	ATTACAAGTCTGGATCAACAAAGACCATGTGGGCAGGGCTTTGCTGGGTGGGCAACTCTCAGAAGCTCCTaGAAGAGCAGTCAGTGCAGA	+
Preference number: 4 (lower is better) Translates to: ITSLDQQRPCGQGFAGWATLRSS*KSSQCR Trigger: TCTGCACTGACTGCTCTTCCAGGAGCTTCTGAGAGT...TGCCCACCCAGCAAAGCCCTGCCCACATGGTCTTTGTTGATCCAGACTTGTAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS-3UTR CCA 90 bp	ATTACAAGTCTGGATCAACAAAGACCATGTGGGCAGGGCTTTGCTGGGTGGGCATCTCTGGAGTATGGATaGAAGCAGTATGACACAGGG	+
Preference number: 4 (lower is better) Translates to: ITSLDQQRPCGQGFAGWASLEYG*KQYDTG Trigger: CCCTGTGTCATACTGCTTCCATCCATACTCCAGAGA...TGCCCACCCAGCAAAGCCCTGCCCACATGGTCTTTGTTGATCCAGACTTGTAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS-3UTR CCA 90 bp	GGAAAGCATTACAAGTCTGGATCAACAAAGACCATGTGGGCAGGGCTTTGCTGGTATACAGGTCTTCAGTaGGCACCATGGCAGTTGGTT	+
Preference number: 4 (lower is better) Translates to: GKHYKSGSTKTMWAGLCWYTGLQ*APWQLV Trigger: AACCAACTGCCATGGTGCCCACTGAAGACCTGTATA...CCAGCAAAGCCCTGCCCACATGGTCTTTGTTGATCCAGACTTGTAATGCTTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS-3UTR CCA 90 bp	ATTACAAGTCTGGATCAACAAAGACCATGTGGGCAGGGCTTTGCTGGGTGGGCATTCCTCTCGATTCTCTaGAGTATGGATGGAAGCAGT	+
Preference number: 4 (lower is better) Translates to: ITSLDQQRPCGQGFAGWAFLSIL*SMDGSS Trigger: ACTGCTTCCATCCATACTCCAGAGAATCGAGAGGAA...TGCCCACCCAGCAAAGCCCTGCCCACATGGTCTTTGTTGATCCAGACTTGTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS-3UTR TCA 90 bp	GCATTACAAGTCTGGATCAACAAAGACCATGTGGGCAGGGCTTTGCTGGGTGGGAAGATAAATGTACTATaGGACAGTTCAGCCAAACGA	+
Preference number: 4 (lower is better) Translates to: ALQVWINKDHVGRALLGGKINVL*DSSAKR Trigger: TCGTTTGGCTGAACTGTCTCATAGTACATTTATCTT...CCCACCCAGCAAAGCCCTGCCCACATGGTCTTTGTTGATCCAGACTTGTAATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS-3UTR GCA 90 bp	GAAAGCATTACAAGTCTGGATCAACAAAGACCATGTGGGCAGGGCTTTGCTGGGTTCCCTATACACATCTaGGGCCAAGATAAATGTACT	+
Preference number: 4 (lower is better) Translates to: ESITSLDQQRPCGQGFAGFPIHI*GQDKCT Trigger: AGTACATTTATCTTGGCCGCAGATGTGTATAGGGAA...CCCAGCAAAGCCCTGCCCACATGGTCTTTGTTGATCCAGACTTGTAATGCTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS-3UTR CCA 90 bp	AGCATTACAAGTCTGGATCAACAAAGACCATGTGGGCAGGGCTTTGCTGGGTGGTCAGTTTTAATTTCATaGACTTCCTCTCGATTCTCT	+
Preference number: 4 (lower is better) Translates to: SITSLDQQRPCGQGFAGWSVLIS*TSSRFS Trigger: AGAGAATCGAGAGGAAGTCCATGAAATTAAAACTGA...CCACCCAGCAAAGCCCTGCCCACATGGTCTTTGTTGATCCAGACTTGTAATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS-3UTR CAA 90 bp	GCATTACAAGTCTGGATCAACAAAGACCATGTGGGCAGGGCTTTGCTGGGTGGGCCCAAAGGAATAGGCTaGACACCAGCAGCAACAATT	+
Preference number: 5 (lower is better) Translates to: ALQVWINKDHVGRALLGGPKGIG*TPAATI Trigger: AATTGTTGCTGCTGGTGTCAAGCCTATTCCTTTGGG...CCCACCCAGCAAAGCCCTGCCCACATGGTCTTTGTTGATCCAGACTTGTAATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS TCA 90 bp	AAATCAAATTCCCTATACACATCTGCGGCCAAGATAAATGTACTATaGGACAGTTCAGCCAAACGAGTATACAGGTCTTCAGTGGGCACC	+
Preference number: 5 (lower is better) Translates to: KSNSLYTSAAKINVL*DSSAKRVYRSSVGT Trigger: GGTGCCCACTGAAGACCTGTATACTCGTTTGGCTGAACTGTCTCATAGTACATTTATCTTGGCCGCAGATGTGTATAGGGAATTTGATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073601.5 ENSMUST00000223958.2
CDS CCA 72 bp	CAGCCAAACGAGTATACAGGTCTTCAGTGGGCACCATaGCAGTTGGTTTGGAGGACACATTCTCCCAAAGGA	+
Preference number: 6 (lower is better) Translates to: QPNEYTGLQWAP*QLVWRTHSPKG Trigger: TCCTTTGGGAGAATGTGTCCTCCAAACCAACTGCCATGGTGCCCACTGAAGACCTGTATACTCGTTTGGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073601.5 ENSMUST00000223958.2
CDS GCA 72 bp	TCCCAAAGGAATAGGCTTGACACCAGCAGCAACAATTaGATTCCGGAGCCTGAAAGAGTCAAAGTCAGCTGC	+
Preference number: 6 (lower is better) Translates to: SQRNRLDTSSNN*IPEPERVKVSC Trigger: GCAGCTGACTTTGACTCTTTCAGGCTCCGGAATGCAATTGTTGCTGCTGGTGTCAAGCCTATTCCTTTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073601.5
CDS GCA 72 bp	TCCCAAAGGAATAGGCTTGACACCAGCAGCAACAATTaGATTCCTGCGGAGCCTGAAAGAGTCAAAGTCAGC	+
Preference number: 6 (lower is better) Translates to: SQRNRLDTSSNN*IPAEPERVKVS Trigger: GCTGACTTTGACTCTTTCAGGCTCCGCAGGAATGCAATTGTTGCTGCTGGTGTCAAGCCTATTCCTTTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223958.2
CDS TCA 72 bp	TCCCTATACACATCTGCGGCCAAGATAAATGTACTATaGGACAGTTCAGCCAAACGAGTATACAGGTCTTCA	+
Preference number: 6 (lower is better) Translates to: SLYTSAAKINVL*DSSAKRVYRSS Trigger: TGAAGACCTGTATACTCGTTTGGCTGAACTGTCTCATAGTACATTTATCTTGGCCGCAGATGTGTATAGGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073601.5 ENSMUST00000223958.2