Pregenerated sensors for PRL3D2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062737

Ensembl transcript IDs: ENSMUST00000080755.12, ENSMUST00000164964.4

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AGTCAGTGCAGACACCAGGTGTTTCAGAGGTTCTTTCCAGGAAATTaGAACATTGATCATTGCTTTCAGAAGGTCTTCAGTTTTAATTTC	+
Preference number: 5 (lower is better) Translates to: SQCRHQVFQRFFPGN*NIDHCFQKVFSFNF Trigger: GAAATTAAAACTGAAGACCTTCTGAAAGCAATGATCAATGTTTCAATTTCCTGGAAAGAACCTCTGAAACACCTGGTGTCTGCACTGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080755.12 ENSMUST00000164964.4
CDS GCA 72 bp	TCCCAAAGGAGTAGGCTTGACACCAGCAGCAACAATTaGATTCCGGAGCCTGAAAGAGTCAAAGTCAGCTGC	+
Preference number: 6 (lower is better) Translates to: SQRSRLDTSSNN*IPEPERVKVSC Trigger: GCAGCTGACTTTGACTCTTTCAGGCTCCGGAATGCAATTGTTGCTGCTGGTGTCAAGCCTACTCCTTTGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080755.12
CDS GCA 72 bp	TCCCAAAGGAGTAGGCTTGACACCAGCAGCAACAATTaGATTCCTGCGGAGCCTGAAAGAGTCAAAGTCAGC	+
Preference number: 6 (lower is better) Translates to: SQRSRLDTSSNN*IPAEPERVKVS Trigger: GCTGACTTTGACTCTTTCAGGCTCCGCAGGAATGCAATTGTTGCTGCTGGTGTCAAGCCTACTCCTTTGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164964.4
CDS CCA 72 bp	TTTCATGGACTTCCTCTCGATTCTCTGGAGTATGGATaGAAGCAGTATGACACAGGGGAAGTGTTCTGTCTG	+
Preference number: 6 (lower is better) Translates to: FHGLPLDSLEYG*KQYDTGEVFCL Trigger: CAGACAGAACACTTCCCCTGTGTCATACTGCTTCCATCCATACTCCAGAGAATCGAGAGGAAGTCCATGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080755.12 ENSMUST00000164964.4
CDS TCA 72 bp	TCCTCTCGATTCTCTGGAGTATGGATGGAAGCAGTATaGCACAGGGGAAGTGTTCTGTCTGTTATCCAAGTT	+
Preference number: 6 (lower is better) Translates to: SSRFSGVWMEAV*HRGSVLSVIQV Trigger: AACTTGGATAACAGACAGAACACTTCCCCTGTGTCATACTGCTTCCATCCATACTCCAGAGAATCGAGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080755.12 ENSMUST00000164964.4

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