RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRL3D1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057170

Ensembl transcript IDs: ENSMUST00000082079.5, ENSMUST00000225330.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp TTTTATGACAATAATTCCATTATAGCTCTACATAACTaGGGAGGGGAAAGCATTACAAGTCTGGTTCAACAA +
Preference number: 3 (lower is better)
Translates to: FYDNNSIIALHN*GGESITSLVQQ
Trigger: TTGTTGAACCAGACTTGTAATGCTTTCCCCTCCTCAGTTATGTAGAGCTATAATGGAATTATTGTCATAAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS-3UTR CCA 90 bp CATTACAAGTCTGGTTCAACAAAGACCATGTGGGCAGGGCTTCGCTGGGTGGGCACTCTCAGAAGCTCCTaGGAGAGCCGTCAGTGCAGA +
Preference number: 4 (lower is better)
Translates to: HYKSGSTKTMWAGLRWVGTLRSS*ESRQCR
Trigger: TCTGCACTGACGGCTCTCCCAGGAGCTTCTGAGAGT...GCCCACCCAGCGAAGCCCTGCCCACATGGTCTTTGTTGAACCAGACTTGTAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS-3UTR CCA 90 bp GAAAGCATTACAAGTCTGGTTCAACAAAGACCATGTGGGCAGGGCTTCGCTGGGACTCTCAGAAGCTCCTaGGAGAGCCGTCAGTGCAGA +
Preference number: 4 (lower is better)
Translates to: ESITSLVQQRPCGQGFAGTLRSS*ESRQCR
Trigger: TCTGCACTGACGGCTCTCCCAGGAGCTTCTGAGAGT...CCCAGCGAAGCCCTGCCCACATGGTCTTTGTTGAACCAGACTTGTAATGCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS-3UTR CCA 90 bp GGAAAGCATTACAAGTCTGGTTCAACAAAGACCATGTGGGCAGGGCTTCGCTGGTCAGTTTTAGTTTCGTaGACTTCCTCTCGATTCTCT +
Preference number: 4 (lower is better)
Translates to: GKHYKSGSTKTMWAGLRWSVLVS*TSSRFS
Trigger: AGAGAATCGAGAGGAAGTCCACGAAACTAAAACTGA...CCAGCGAAGCCCTGCCCACATGGTCTTTGTTGAACCAGACTTGTAATGCTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS-3UTR GCA 90 bp AAGCATTACAAGTCTGGTTCAACAAAGACCATGTGGGCAGGGCTTCGCTGGGTGTTCCCTATACACATCTaGGGCCAAGATAAATGTATT +
Preference number: 4 (lower is better)
Translates to: KHYKSGSTKTMWAGLRWVFPIHI*GQDKCI
Trigger: AATACATTTATCTTGGCCGCAGATGTGTATAGGGAA...CACCCAGCGAAGCCCTGCCCACATGGTCTTTGTTGAACCAGACTTGTAATGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS-3UTR GCA 90 bp AGGAGGGGAAAGCATTACAAGTCTGGTTCAACAAAGACCATGTGGGCAGGGCTTTTCCCTATACACATCTaGGGCCAAGATAAATGTATT +
Preference number: 4 (lower is better)
Translates to: RRGKHYKSGSTKTMWAGLFPIHI*GQDKCI
Trigger: AATACATTTATCTTGGCCGCAGATGTGTATAGGGAA...AAGCCCTGCCCACATGGTCTTTGTTGAACCAGACTTGTAATGCTTTCCCCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS-3UTR CAA 90 bp GCATTACAAGTCTGGTTCAACAAAGACCATGTGGGCAGGGCTTCGCTGGGTGGGTGGGCACCATGGCAGTaGGTTTGGAGGACACATTCT +
Preference number: 5 (lower is better)
Translates to: ALQVWFNKDHVGRASLGGWAPWQ*VWRTHS
Trigger: AGAATGTGTCCTCCAAACCAACTGCCATGGTGCCCA...CCCACCCAGCGAAGCCCTGCCCACATGGTCTTTGTTGAACCAGACTTGTAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS CCA 90 bp CCAAACGAGTATACAGGTCTTCAGTGGGCACCATGGCAGTTGGTTTaGAGGACACATTCTCCCAAAGGAGTAGGCTTGACACCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: PNEYTGLQWAPWQLV*RTHSPKGVGLTPAA
Trigger: TGCTGCTGGTGTCAAGCCTACTCCTTTGGGAGAATGTGTCCTCCAAACCAACTGCCATGGTGCCCACTGAAGACCTGTATACTCGTTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS-3UTR CAA 90 bp GGAAAGCATTACAAGTCTGGTTCAACAAAGACCATGTGGGCAGGGCTTCGCTGGTGGGCACCATGGCAGTaGGTTTGGAGGACACATTCT +
Preference number: 5 (lower is better)
Translates to: GKHYKSGSTKTMWAGLRWWAPWQ*VWRTHS
Trigger: AGAATGTGTCCTCCAAACCAACTGCCATGGTGCCCA...CCAGCGAAGCCCTGCCCACATGGTCTTTGTTGAACCAGACTTGTAATGCTTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS-3UTR CAA 90 bp CATTACAAGTCTGGTTCAACAAAGACCATGTGGGCAGGGCTTCGCTGGGTGGGCGAGTCCTGTTGTATATaGTCTGAAGTCCCTCCAGAA +
Preference number: 5 (lower is better)
Translates to: HYKSGSTKTMWAGLRWVGESCCI*SEVPPE
Trigger: TTCTGGAGGGACTTCAGACAATATACAACAGGACTC...GCCCACCCAGCGAAGCCCTGCCCACATGGTCTTTGTTGAACCAGACTTGTAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS-3UTR CAA 90 bp AGGAGGGGAAAGCATTACAAGTCTGGTTCAACAAAGACCATGTGGGCAGGGCTTGAGTCCTGTTGTATATaGTCTGAAGTCCCTCCAGAA +
Preference number: 5 (lower is better)
Translates to: RRGKHYKSGSTKTMWAGLESCCI*SEVPPE
Trigger: TTCTGGAGGGACTTCAGACAATATACAACAGGACTC...AAGCCCTGCCCACATGGTCTTTGTTGAACCAGACTTGTAATGCTTTCCCCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS CCA 90 bp CAGAAGGTCTTCAGTTTTAGTTTCGTGGACTTCCTCTCGATTCTCTaGAGTATGGATGGAAGCAGTATGACACAGGGGAAGTGTTCTGTC +
Preference number: 5 (lower is better)
Translates to: QKVFSFSFVDFLSIL*SMDGSSMTQGKCSV
Trigger: GACAGAACACTTCCCCTGTGTCATACTGCTTCCATCCATACTCCAGAGAATCGAGAGGAAGTCCACGAAACTAAAACTGAAGACCTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS TCA 90 bp CGTCAGTGCAGACACCAGGTGTTTCAGAGGTTCTTTCCAGGAAATTaGAACATTGATCATTGCTTTCAGAAGGTCTTCAGTTTTAGTTTC +
Preference number: 5 (lower is better)
Translates to: RQCRHQVFQRFFPGN*NIDHCFQKVFSFSF
Trigger: GAAACTAAAACTGAAGACCTTCTGAAAGCAATGATCAATGTTTCAATTTCCTGGAAAGAACCTCTGAAACACCTGGTGTCTGCACTGACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS GCA 72 bp CCCCATACTCTCAGAAGCTCCTGGGAGAGCCGTCAGTaGAGACACCAGGTGTTTCAGAGGTTCTTTCCAGGA +
Preference number: 6 (lower is better)
Translates to: PHTLRSSWESRQ*RHQVFQRFFPG
Trigger: TCCTGGAAAGAACCTCTGAAACACCTGGTGTCTGCACTGACGGCTCTCCCAGGAGCTTCTGAGAGTATGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS GCA 72 bp TCCCAAAGGAGTAGGCTTGACACCAGCAGCAACAATTaGATTCCGGAGCCTGAAAGATTCAAAGTCAGCTGC +
Preference number: 6 (lower is better)
Translates to: SQRSRLDTSSNN*IPEPERFKVSC
Trigger: GCAGCTGACTTTGAATCTTTCAGGCTCCGGAATGCAATTGTTGCTGCTGGTGTCAAGCCTACTCCTTTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000082079.5
CDS GCA 72 bp TCCCAAAGGAGTAGGCTTGACACCAGCAGCAACAATTaGATTCCTGCGGAGCCTGAAAGATTCAAAGTCAGC +
Preference number: 6 (lower is better)
Translates to: SQRSRLDTSSNN*IPAEPERFKVS
Trigger: GCTGACTTTGAATCTTTCAGGCTCCGCAGGAATGCAATTGTTGCTGCTGGTGTCAAGCCTACTCCTTTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225330.2
CDS CCA 72 bp TTTCGTGGACTTCCTCTCGATTCTCTGGAGTATGGATaGAAGCAGTATGACACAGGGGAAGTGTTCTGTCTG +
Preference number: 6 (lower is better)
Translates to: FRGLPLDSLEYG*KQYDTGEVFCL
Trigger: CAGACAGAACACTTCCCCTGTGTCATACTGCTTCCATCCATACTCCAGAGAATCGAGAGGAAGTCCACGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2
CDS CCA 72 bp ATCATTGCTTTCAGAAGGTCTTCAGTTTTAGTTTCGTaGACTTCCTCTCGATTCTCTGGAGTATGGATGGAA +
Preference number: 6 (lower is better)
Translates to: IIAFRRSSVLVS*TSSRFSGVWME
Trigger: TTCCATCCATACTCCAGAGAATCGAGAGGAAGTCCACGAAACTAAAACTGAAGACCTTCTGAAAGCAATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082079.5
ENSMUST00000225330.2