Pregenerated sensors for PRL3C1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017922Ensembl transcript IDs: ENSMUST00000018066.13, ENSMUST00000110364.9, ENSMUST00000178072.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GTTCATTCATTGTGGGCCATCTTAGTAGCAAATACCACTAATAAGGACTTTGCAGCAACTCTATGGATGTaGCGAGAAGAGGAAAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: VHSLWAILVANTTNKDFAATLWM*REEESR Trigger: TCTGCTTTCCTCTTCTCGTCACATCCATAGAGTTGC...TGCAAAGTCCTTATTAGTGGTATTTGCTACTAAGATGGCCCACAATGAATGAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018066.13 ENSMUST00000110364.9 |
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| CDS-3UTR GCA 90 bp | GTTCATTCATTGTGGGCCATCTTAGTAGCAAATACCACTAATAAGGACTTTGCAATACCCACAGGAACATaGATGACACCAACAGGAACA | + |
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Preference number: 4 (lower is better) Translates to: VHSLWAILVANTTNKDFAIPTGT*MTPTGT Trigger: TGTTCCTGTTGGTGTCATGCATGTTCCTGTGGGTAT...TGCAAAGTCCTTATTAGTGGTATTTGCTACTAAGATGGCCCACAATGAATGAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018066.13 |
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| CDS-3UTR TCA 90 bp | CATTCATTGTGGGCCATCTTAGTAGCAAATACCACTAATAAGGACTTTGCACTTTCAACACTGCAGGTATaGGCATTTTCAGTGGATATG | + |
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Preference number: 4 (lower is better) Translates to: HSLWAILVANTTNKDFALSTLQV*AFSVDM Trigger: CATATCCACTGAAAATGCTCATACCTGCAGTGTTGA...AAGTGCAAAGTCCTTATTAGTGGTATTTGCTACTAAGATGGCCCACAATGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018066.13 ENSMUST00000110364.9 |
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| CDS-3UTR TCA 90 bp | GTTCATTCATTGTGGGCCATCTTAGTAGCAAATACCACTAATAAGGACTTTGCATCAACACTGCAGGTATaGGCATTTTCAGTGGATATG | + |
|
Preference number: 4 (lower is better) Translates to: VHSLWAILVANTTNKDFASTLQV*AFSVDM Trigger: CATATCCACTGAAAATGCTCATACCTGCAGTGTTGA...TGCAAAGTCCTTATTAGTGGTATTTGCTACTAAGATGGCCCACAATGAATGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018066.13 ENSMUST00000110364.9 |
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| CDS-3UTR CCA 90 bp | CATTCATTGTGGGCCATCTTAGTAGCAAATACCACTAATAAGGACTTTGCACTTCATAGATCTCTTCATTaGATTTCCGGTCATATCGTG | + |
|
Preference number: 4 (lower is better) Translates to: HSLWAILVANTTNKDFALHRSLH*ISGHIV Trigger: CACGATATGACCGGAAATCCAATGAAGAGATCTATG...AAGTGCAAAGTCCTTATTAGTGGTATTTGCTACTAAGATGGCCCACAATGAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018066.13 ENSMUST00000110364.9 |
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| CDS CCA 90 bp | GGATGTGACGAGAAGAGGAAAGCAGATTGTCATAGATCTCTTCATTaGATTTCCGGTCATATCGTGTGGCAGTCACATATACCCACAGGA | + |
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Preference number: 5 (lower is better) Translates to: GCDEKRKADCHRSLH*ISGHIVWQSHIPTG Trigger: TCCTGTGGGTATATGTGACTGCCACACGATATGACCGGAAATCCAATGAAGAGATCTATGACAATCTGCTTTCCTCTTCTCGTCACATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018066.13 ENSMUST00000110364.9 ENSMUST00000178072.2 |
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| CDS TCA 90 bp | TTAAGCTCTACAGCTCTTGTCATCATCCCATCATCAGAATCTAGATaGGTCAACACTGCAGGTATGAGCATTTTCAGTGGATATGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: LSSTALVIIPSSESR*VNTAGMSIFSGYVQ Trigger: CTGGACATATCCACTGAAAATGCTCATACCTGCAGTGTTGACTCATCTAGATTCTGATGATGGGATGATGACAAGAGCTGTAGAGCTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018066.13 ENSMUST00000110364.9 ENSMUST00000178072.2 |
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| CDS CCA 72 bp | CATAGATCTCTTCATTGGATTTCCGGTCATATCGTGTaGCAGTCACATATACCCACAGGAACATGCATGACA | + |
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Preference number: 6 (lower is better) Translates to: HRSLHWISGHIV*QSHIPTGTCMT Trigger: TGTCATGCATGTTCCTGTGGGTATATGTGACTGCCACACGATATGACCGGAAATCCAATGAAGAGATCTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018066.13 |
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| CDS TCA 72 bp | ACAGCTCTTGTCATCATCCCATCATCAGAATCTAGATaGGTCAACACTGCAGGTATGAGCATTTTCAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: TALVIIPSSESR*VNTAGMSIFSG Trigger: TCCACTGAAAATGCTCATACCTGCAGTGTTGACTCATCTAGATTCTGATGATGGGATGATGACAAGAGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018066.13 ENSMUST00000110364.9 ENSMUST00000178072.2 |
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| CDS CCA 72 bp | GAGAAGAGGAAAGCAGATTGTCATAGATCTCTTCATTaGATTTCCGGTCATATCGTGTGGCAGTCACATATA | + |
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Preference number: 6 (lower is better) Translates to: EKRKADCHRSLH*ISGHIVWQSHI Trigger: TATATGTGACTGCCACACGATATGACCGGAAATCCAATGAAGAGATCTATGACAATCTGCTTTCCTCTTCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018066.13 ENSMUST00000110364.9 ENSMUST00000178072.2 |
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| CDS TCA 72 bp | CATCATCAGAATCTAGATGAGTCAACACTGCAGGTATaGGCATTTTCAGTGGATATGTCCAGAAATTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: HHQNLDESTLQV*AFSVDMSRNLK Trigger: TTTCAAATTTCTGGACATATCCACTGAAAATGCTCATACCTGCAGTGTTGACTCATCTAGATTCTGATGATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000018066.13 ENSMUST00000110364.9 ENSMUST00000178072.2 |
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