RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRL3B1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038891

Ensembl transcript IDs: ENSMUST00000035273.4, ENSMUST00000225089.2

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTCAATTTAGCATTTGCAAAGAATCAGTTTATTTGGGGGTAAGATaGCAACTCAATCTAGAAAGGCACCAAAGAAGGGGAAATTCATTG +
Preference number: 1 (lower is better)
Translates to: FQFSICKESVYLGVR*QLNLERHQRRGNSL
Trigger: CAATGAATTTCCCCTTCTTTGGTGCCTTTCTAGATTGAGTTGTCATCTTACCCCCAAATAAACTGATTCTTTGCAAATGCTAAATTGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
3UTR TCA 72 bp AGCATTTGCAAAGAATCAGTTTATTTGGGGGTAAGATaGCAACTCAATCTAGAAAGGCACCAAAGAAGGGGA +
Preference number: 3 (lower is better)
Translates to: SICKESVYLGVR*QLNLERHQRRG
Trigger: TCCCCTTCTTTGGTGCCTTTCTAGATTGAGTTGTCATCTTACCCCCAAATAAACTGATTCTTTGCAAATGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR GCA 90 bp CATTGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGATGCCAGCAACAGGAGTaGCCCAGAGAAGGAGCATGG +
Preference number: 4 (lower is better)
Translates to: HWCFEGLDHEGPSKRQRRCQQQE*PREGAW
Trigger: CCATGCTCCTTCTCTGGGGCACTCCTGTTGCTGGCA...TCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR GCA 90 bp TGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGAGGGAAGAGCAGCCACTGCTaGCACCATGTGTTTCAGAGG +
Preference number: 4 (lower is better)
Translates to: WCFEGLDHEGPSKRQRRGKSSHC*HHVFQR
Trigger: CCTCTGAAACACATGGTGGCAGCAGTGGCTGCTCTT...CCCTCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR GCA 90 bp CATTGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGATTCTGGAGTAAGGATTaGAGCAGTGTGGCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: HWCFEGLDHEGPSKRQRRFWSKD*SSVAGA
Trigger: AGCCCCTGCCACACTGCTGCAATCCTTACTCCAGAA...TCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR CCA 90 bp TGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGAGGGTCCGATGTTGTCTGGTaGACTTGCTCGCTGTTTTCT +
Preference number: 4 (lower is better)
Translates to: WCFEGLDHEGPSKRQRRGSDVVW*TCSLFS
Trigger: AGAAAACAGCGAGCAAGTCCACCAGACAACATCGGA...CCCTCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR TCA 90 bp TGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGAGGGCAACTCCTTTGTTCTTaGCAGCAGAGTATCAGGTAC +
Preference number: 4 (lower is better)
Translates to: WCFEGLDHEGPSKRQRRGQLLCS*QQSIRY
Trigger: GTACCTGATACTCTGCTGTCAAGAACAAAGGAGTTG...CCCTCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR TCA 90 bp CATTGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGACCTTCCAGAAGCCCTTaGATTCTTTCCTCCAACTCC +
Preference number: 4 (lower is better)
Translates to: HWCFEGLDHEGPSKRQRRPSRSP*ILSSNS
Trigger: GGAGTTGGAGGAAAGAATTCAAGGGCTTCTGGAAGG...TCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR CCA 90 bp TGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGAGGGTTGCTCGCTGTTTTCTaGAGTAAGGATTGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: WCFEGLDHEGPSKRQRRGLLAVF*SKDCSS
Trigger: ACTGCTGCAATCCTTACTCCAGAAAACAGCGAGCAA...CCCTCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR GCA 90 bp CATTGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGAGTTGTCTGGTGGACTTaGTCGCTGTTTTCTGGAGTA +
Preference number: 4 (lower is better)
Translates to: HWCFEGLDHEGPSKRQRRVVWWT*SLFSGV
Trigger: TACTCCAGAAAACAGCGAGCAAGTCCACCAGACAAC...TCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR CCA 90 bp CATTGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGACCCAGAGAAGGAGCATaGTTGACTCAAAGACAGCTT +
Preference number: 4 (lower is better)
Translates to: HWCFEGLDHEGPSKRQRRPREGA*LTQRQL
Trigger: AAGCTGTCTTTGAGTCAACCATGCTCCTTCTCTGGG...TCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR TCA 90 bp CATTGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGATTCCATGAAGGCTTTTaGAGCAAGATCATGGGCGTT +
Preference number: 4 (lower is better)
Translates to: HWCFEGLDHEGPSKRQRRFHEGF*SKIMGV
Trigger: AACGCCCATGATCTTGCTTCAAAAGCCTTCATGGAA...TCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR CAA 90 bp TGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGAGGGTCCTTCCAGAAGCCCTaGAATTCTTTCCTCCAACTC +
Preference number: 5 (lower is better)
Translates to: WCFEGLDHEGPSKRQRRGSFQKP*NSFLQL
Trigger: GAGTTGGAGGAAAGAATTCAAGGGCTTCTGGAAGGA...CCCTCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR CAA 90 bp TGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGAGGGAGAGAAGGAGCATGGTaGACTCAAAGACAGCTTCAT +
Preference number: 5 (lower is better)
Translates to: WCFEGLDHEGPSKRQRRGREGAW*TQRQLH
Trigger: ATGAAGCTGTCTTTGAGTCAACCATGCTCCTTCTCT...CCCTCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS-3UTR CAA 90 bp TGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGAGGGTTTCCTCCAACTCCTTaGTTCTTGACAGCAGAGTAT +
Preference number: 5 (lower is better)
Translates to: WCFEGLDHEGPSKRQRRGFPPTP*FLTAEY
Trigger: ATACTCTGCTGTCAAGAACAAAGGAGTTGGAGGAAA...CCCTCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS TCA 90 bp GGCCATAGGTCCAAGCTGTCCTACCAAACTTCATTTCAAATTCCATaGAGGCTTTTGAAGCAAGATCATGGGCGTTGTGTGACACCACAA +
Preference number: 5 (lower is better)
Translates to: GHRSKLSYQTSFQIP*RLLKQDHGRCVTPQ
Trigger: TTGTGGTGTCACACAACGCCCATGATCTTGCTTCAAAAGCCTTCATGGAATTTGAAATGAAGTTTGGTAGGACAGCTTGGACCTATGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS-3UTR CAA 90 bp CATTGGTGCTTTGAAGGTCTAGATCACGAGGGACCTTCTAAGAGACAGAGAAGAAGAAAGTATAGTCACTaGCAACAGCTCCTGGGTAAA +
Preference number: 5 (lower is better)
Translates to: HWCFEGLDHEGPSKRQRRRKYSH*QQLLGK
Trigger: TTTACCCAGGAGCTGTTGCAAGTGACTATACTTTCT...TCTTCTCTGTCTCTTAGAAGGTCCCTCGTGATCTAGACCTTCAAAGCACCAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS CCA 90 bp CCAAACTTCATTTCAAATTCCATGAAGGCTTTTGAAGCAAGATCATaGGCGTTGTGTGACACCACAATCACACGTTGGTATAGGCTTTCA +
Preference number: 5 (lower is better)
Translates to: PNFISNSMKAFEARS*ALCDTTITRWYRLS
Trigger: TGAAAGCCTATACCAACGTGTGATTGTGGTGTCACACAACGCCCATGATCTTGCTTCAAAAGCCTTCATGGAATTTGAAATGAAGTTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS GCA 72 bp CAGCAGAGTATCAGGTACATGTGGAAGAGCAGCCACTaGTGCCACCATGTGTTTCAGAGGCTCTTCCCAGGC +
Preference number: 6 (lower is better)
Translates to: QQSIRYMWKSSH*CHHVFQRLFPG
Trigger: GCCTGGGAAGAGCCTCTGAAACACATGGTGGCAGCAGTGGCTGCTCTTCCACATGTACCTGATACTCTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS GCA 72 bp CAGAGTATCAGGTACATGTGGAAGAGCAGCCACTGCTaGCACCATGTGTTTCAGAGGCTCTTCCCAGGCTTG +
Preference number: 6 (lower is better)
Translates to: QSIRYMWKSSHC*HHVFQRLFPGL
Trigger: CAAGCCTGGGAAGAGCCTCTGAAACACATGGTGGCAGCAGTGGCTGCTCTTCCACATGTACCTGATACTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS CAA 72 bp TTGGTAAGGAAGTCACCTTCTCCCAGACAAGTAGGTTaGACACTGCCAGCAACAGGAGTGCCCCAGAGAAGG +
Preference number: 6 (lower is better)
Translates to: LVRKSPSPRQVG*TLPATGVPQRR
Trigger: CCTTCTCTGGGGCACTCCTGTTGCTGGCAGTGTCAAACCTACTTGTCTGGGAGAAGGTGACTTCCTTACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS GCA 72 bp ACTTTCAGAAGGTCTTCCGATGTTGTCTGGTGGACTTaGTCGCTGTTTTCTGGAGTAAGGATTGCAGCAGTG +
Preference number: 6 (lower is better)
Translates to: TFRRSSDVVWWT*SLFSGVRIAAV
Trigger: CACTGCTGCAATCCTTACTCCAGAAAACAGCGAGCAAGTCCACCAGACAACATCGGAAGACCTTCTGAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS CAA 72 bp CACTTTCAGAAGGTCTTCCGATGTTGTCTGGTGGACTaGCTCGCTGTTTTCTGGAGTAAGGATTGCAGCAGT +
Preference number: 6 (lower is better)
Translates to: HFQKVFRCCLVD*LAVFWSKDCSS
Trigger: ACTGCTGCAATCCTTACTCCAGAAAACAGCGAGCAAGTCCACCAGACAACATCGGAAGACCTTCTGAAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS CCA 72 bp ATGGACACTTTCAGAAGGTCTTCCGATGTTGTCTGGTaGACTTGCTCGCTGTTTTCTGGAGTAAGGATTGCA +
Preference number: 6 (lower is better)
Translates to: MDTFRRSSDVVW*TCSLFSGVRIA
Trigger: TGCAATCCTTACTCCAGAAAACAGCGAGCAAGTCCACCAGACAACATCGGAAGACCTTCTGAAAGTGTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS CCA 72 bp GTGATGGACACTTTCAGAAGGTCTTCCGATGTTGTCTaGTGGACTTGCTCGCTGTTTTCTGGAGTAAGGATT +
Preference number: 6 (lower is better)
Translates to: VMDTFRRSSDVV*WTCSLFSGVRI
Trigger: AATCCTTACTCCAGAAAACAGCGAGCAAGTCCACCAGACAACATCGGAAGACCTTCTGAAAGTGTCCATCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS CAA 90 bp CCACAATCACACGTTGGTATAGGCTTTCAGTGGGTAATCGATAATTaGGTAAGGAAGTCACCTTCTCCCAGACAAGTAGGTTTGACACTG +
Preference number: 6 (lower is better)
Translates to: PQSHVGIGFQWVIDN*VRKSPSPRQVGLTL
Trigger: CAGTGTCAAACCTACTTGTCTGGGAGAAGGTGACTTCCTTACCAAATTATCGATTACCCACTGAAAGCCTATACCAACGTGTGATTGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS CAA 72 bp CACGTTGGTATAGGCTTTCAGTGGGTAATCGATAATTaGGTAAGGAAGTCACCTTCTCCCAGACAAGTAGGT +
Preference number: 6 (lower is better)
Translates to: HVGIGFQWVIDN*VRKSPSPRQVG
Trigger: ACCTACTTGTCTGGGAGAAGGTGACTTCCTTACCAAATTATCGATTACCCACTGAAAGCCTATACCAACGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS CAA 90 bp TTCATTTCAAATTCCATGAAGGCTTTTGAAGCAAGATCATGGGCGTaGTGTGACACCACAATCACACGTTGGTATAGGCTTTCAGTGGGT +
Preference number: 6 (lower is better)
Translates to: FISNSMKAFEARSWA*CDTTITRWYRLSVG
Trigger: ACCCACTGAAAGCCTATACCAACGTGTGATTGTGGTGTCACACAACGCCCATGATCTTGCTTCAAAAGCCTTCATGGAATTTGAAATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035273.4
ENSMUST00000225089.2
CDS CCA 72 bp TGCAGACCAGAAAGTATAGTCACTTGCAACAGCTCCTaGGTAAACCCTATTGAATATGATCTTCAGTCCTTC +
Preference number: 6 (lower is better)
Translates to: CRPESIVTCNSS*VNPIEYDLQSF
Trigger: GAAGGACTGAAGATCATATTCAATAGGGTTTACCCAGGAGCTGTTGCAAGTGACTATACTTTCTGGTCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4
CDS TCA 72 bp CTATTGAATATGATCTTCAGTCCTTCCAGAAGCCCTTaGATTCTTTCCTCCAACTCCTTTGTTCTTGACAGC +
Preference number: 6 (lower is better)
Translates to: LLNMIFSPSRSP*ILSSNSFVLDS
Trigger: GCTGTCAAGAACAAAGGAGTTGGAGGAAAGAATTCAAGGGCTTCTGGAAGGACTGAAGATCATATTCAATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035273.4