Pregenerated sensors for PRL3A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038883Ensembl transcript IDs: ENSMUST00000049463.4
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCCACCCTGATCCACTGCACCTCTGTTTCCCTTCAGAGAAAGGTAGACCTCCCAGGAAAAAGGGTCCCATaGGCAGGCAAAACAGAGATA | + |
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Preference number: 2 (lower is better) Translates to: PTLIHCTSVSLQRKVDLPGKRVP*AGKTEI Trigger: TATCTCTGTTTTGCCTGCTCATGGGACCCTTTTTCC...TGGGAGGTCTACCTTTCTCTGAAGGGAAACAGAGGTGCAGTGGATCAGGGTGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| 3UTR-3UTR CCA 90 bp | AGATACACACCCCCATTCACACATGCACTTTCGCTCTTAGGAGTCCTACAAACAAAAGCATTGATGATCTaGATAACCAAGGACCAACCT | + |
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Preference number: 2 (lower is better) Translates to: RYTPPFTHALSLLGVLQTKALMI*ITKDQP Trigger: AGGTTGGTCCTTGGTTATCCAGATCATCAATGCTTT...TGTTTGTAGGACTCCTAAGAGCGAAAGTGCATGTGTGAATGGGGGTGTGTATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| 3UTR-3UTR CAA 90 bp | CTACAAAACCTCCTGACCACAGATTCCCCCTTCTCCATTATACAAAGTTCCTCCCTCTCATACCAAGGATaGATGGTACAACTCAGTAAG | + |
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Preference number: 3 (lower is better) Translates to: LQNLLTTDSPFSIIQSSSLSYQG*MVQLSK Trigger: CTTACTGAGTTGTACCATCAATCCTTGGTATGAGAG...GGAGGAACTTTGTATAATGGAGAAGGGGGAATCTGTGGTCAGGAGGTTTTGTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR CCA 90 bp | CCCACCCTGATCCACTGCACCTCTGTTTCCCTTCAGAGAAAGGTAGACCTCCCATCACTGTCTAGGCAGTaGAGAATGTTACTAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: PTLIHCTSVSLQRKVDLPSLSRQ*RMLLRA Trigger: TGCTCTTAGTAACATTCTCCACTGCCTAGACAGTGA...TGGGAGGTCTACCTTTCTCTGAAGGGAAACAGAGGTGCAGTGGATCAGGGTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR TCA 90 bp | TCCTTCTTCTCCCACCCTGATCCACTGCACCTCTGTTTCCCTTCAGAGAAAGGTAGGTTTGAGATGTACTaGGCCATGAAAATAGCACTG | + |
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Preference number: 4 (lower is better) Translates to: SFFSHPDPLHLCFPSEKGRFEMY*AMKIAL Trigger: CAGTGCTATTTTCATGGCTCAGTACATCTCAAACCT...ACCTTTCTCTGAAGGGAAACAGAGGTGCAGTGGATCAGGGTGGGAGAAGAAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR TCA 90 bp | TCTTCTCTCCTACAAAACCTCCTGACCACAGATTCCCCCTTCTCCATTATACAATGCAGGAGTAGCAAGTaGAGTGGTGTGGCAGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: SSLLQNLLTTDSPFSIIQCRSSK*SGVAVA Trigger: AGCAACTGCCACACCACTTCACTTGCTACTCCTGCA...TTGTATAATGGAGAAGGGGGAATCTGTGGTCAGGAGGTTTTGTAGGAGAGAAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR TCA 90 bp | CTCCTACAAAACCTCCTGACCACAGATTCCCCCTTCTCCATTATACAAAGTTCCTCTTCAGCTCCAGGATaGACCCTGATAAGGATTGCC | + |
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Preference number: 4 (lower is better) Translates to: LLQNLLTTDSPFSIIQSSSSAPG*TLIRIA Trigger: GGCAATCCTTATCAGGGTTCATCCTGGAGCTGAAGA...GGAACTTTGTATAATGGAGAAGGGGGAATCTGTGGTCAGGAGGTTTTGTAGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR GCA 90 bp | ACAGATTCCCCCTTCTCCATTATACAAAGTTCCTCCCTCACCTCCTTCTTCTCCGTTGCTGGAGTTCCTTaGTTTGTACCCAAGGCTATG | + |
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Preference number: 4 (lower is better) Translates to: TDSPFSIIQSSSLTSFFSVAGVP*FVPKAM Trigger: CATAGCCTTGGGTACAAAGCAAGGAACTCCAGCAAC...GGAGAAGAAGGAGGTGAGGGAGGAACTTTGTATAATGGAGAAGGGGGAATCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR CCA 90 bp | AGATACACACCCCCATTCACACATGCACTTTCGCTCTTAGGAGTCCTACAAACATGGTGTGGCAGTTGCTaGAGTTCCTTGCTTTGTACC | + |
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Preference number: 4 (lower is better) Translates to: RYTPPFTHALSLLGVLQTWCGSC*SSLLCT Trigger: GGTACAAAGCAAGGAACTCCAGCAACTGCCACACCA...TGTTTGTAGGACTCCTAAGAGCGAAAGTGCATGTGTGAATGGGGGTGTGTATCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR TCA 90 bp | TCCTTCTTCTCCCACCCTGATCCACTGCACCTCTGTTTCCCTTCAGAGAAAGGTCTTCAGAAGGACATCTaGTTGTGTCTGTTGAATTTG | + |
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Preference number: 4 (lower is better) Translates to: SFFSHPDPLHLCFPSEKGLQKDI*LCLLNL Trigger: CAAATTCAACAGACACAATCAGATGTCCTTCTGAAG...ACCTTTCTCTGAAGGGAAACAGAGGTGCAGTGGATCAGGGTGGGAGAAGAAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR TCA 90 bp | TCCTTCTTCTCCCACCCTGATCCACTGCACCTCTGTTTCCCTTCAGAGAAAGGTTTGTACCCAAGGCTATaGACAAAATTTGCATCAAAC | + |
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Preference number: 4 (lower is better) Translates to: SFFSHPDPLHLCFPSEKGLYPRL*TKFASN Trigger: GTTTGATGCAAATTTTGTTCATAGCCTTGGGTACAA...ACCTTTCTCTGAAGGGAAACAGAGGTGCAGTGGATCAGGGTGGGAGAAGAAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR TCA 90 bp | CTACAAAACCTCCTGACCACAGATTCCCCCTTCTCCATTATACAAAGTTCCTCCAGGCTCGTGAAATACTaGTCACCATCTTCAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: LQNLLTTDSPFSIIQSSSRLVKY*SPSSEG Trigger: TCCTTCTGAAGATGGTGATCAGTATTTCACGAGCCT...GGAGGAACTTTGTATAATGGAGAAGGGGGAATCTGTGGTCAGGAGGTTTTGTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR TCA 90 bp | ACCTCCTTCTTCTCCCACCCTGATCCACTGCACCTCTGTTTCCCTTCAGAGAAATTTCCTTCACTTCTATaGCTTTCAACAGTATGGTCT | + |
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Preference number: 4 (lower is better) Translates to: TSFFSHPDPLHLCFPSEKFPSLL*LSTVWS Trigger: AGACCATACTGTTGAAAGTCATAGAAGTGAAGGAAA...TTTCTCTGAAGGGAAACAGAGGTGCAGTGGATCAGGGTGGGAGAAGAAGGAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR TCA 90 bp | CTCCTACAAAACCTCCTGACCACAGATTCCCCCTTCTCCATTATACAAAGTTCCTCTGATTGTGTCTGTTaGATTTGTTCAGTGCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: LLQNLLTTDSPFSIIQSSSDCVC*ICSVLA Trigger: TGCAAGCACTGAACAAATTCAACAGACACAATCAGA...GGAACTTTGTATAATGGAGAAGGGGGAATCTGTGGTCAGGAGGTTTTGTAGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR GCA 90 bp | CAGATTCCCCCTTCTCCATTATACAAAGTTCCTCCCTCACCTCCTTCTTCTCCCGCTATGAACAAAATTTaGATCAAACTCCTCAGACAT | + |
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Preference number: 4 (lower is better) Translates to: QIPPSPLYKVPPSPPSSPAMNKI*IKLLRH Trigger: ATGTCTGAGGAGTTTGATGCAAATTTTGTTCATAGC...GGGAGAAGAAGGAGGTGAGGGAGGAACTTTGTATAATGGAGAAGGGGGAATCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR CCA 90 bp | TTGATGGTACAACTCAGTAAGAGGAAAAAGGGTCCCATGAGCAGGCAAAACAGACCATGTCAAAGCACATaGGCATGGAATACACATTCT | + |
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Preference number: 4 (lower is better) Translates to: LMVQLSKRKKGPMSRQNRPCQST*AWNTHS Trigger: AGAATGTGTATTCCATGCCCATGTGCTTTGACATGG...TCTGTTTTGCCTGCTCATGGGACCCTTTTTCCTCTTACTGAGTTGTACCATCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR CAA 90 bp | TCACCTCCTTCTTCTCCCACCCTGATCCACTGCACCTCTGTTTCCCTTCAGAGATTCAACAGTATGGTCTaGCAGGCTCCTTCAAGAGTA | + |
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Preference number: 5 (lower is better) Translates to: SPPSSPTLIHCTSVSLQRFNSMV*QAPSRV Trigger: TACTCTTGAAGGAGCCTGCAAGACCATACTGTTGAA...TCTCTGAAGGGAAACAGAGGTGCAGTGGATCAGGGTGGGAGAAGAAGGAGGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR CAA 90 bp | TCACCTCCTTCTTCTCCCACCCTGATCCACTGCACCTCTGTTTCCCTTCAGAGATTGTGTCTGTTGAATTaGTTCAGTGCTTGCAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: SPPSSPTLIHCTSVSLQRLCLLN*FSACRS Trigger: ACTCCTGCAAGCACTGAACAAATTCAACAGACACAA...TCTCTGAAGGGAAACAGAGGTGCAGTGGATCAGGGTGGGAGAAGAAGGAGGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR CAA 90 bp | ACCACAGATTCCCCCTTCTCCATTATACAAAGTTCCTCCCTCACCTCCTTCTTCCATCCAGGAACATGGTaGACTCAAAACTGGCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: TTDSPFSIIQSSSLTSFFHPGTW*TQNWLH Trigger: ATGCAGCCAGTTTTGAGTCAACCATGTTCCTGGATG...GAAGAAGGAGGTGAGGGAGGAACTTTGTATAATGGAGAAGGGGGAATCTGTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR CAA 90 bp | ACAGATTCCCCCTTCTCCATTATACAAAGTTCCTCCCTCACCTCCTTCTTCTCCAGTTGCTGGAGTTCCTaGCTTTGTACCCAAGGCTAT | + |
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Preference number: 5 (lower is better) Translates to: TDSPFSIIQSSSLTSFFSSCWSS*LCTQGY Trigger: ATAGCCTTGGGTACAAAGCAAGGAACTCCAGCAACT...GGAGAAGAAGGAGGTGAGGGAGGAACTTTGTATAATGGAGAAGGGGGAATCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR CAA 90 bp | ACCTCCTTCTTCTCCCACCCTGATCCACTGCACCTCTGTTTCCCTTCAGAGAAAGGCTATGAACAAAATTaGCATCAAACTCCTCAGACA | + |
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Preference number: 5 (lower is better) Translates to: TSFFSHPDPLHLCFPSEKGYEQN*HQTPQT Trigger: TGTCTGAGGAGTTTGATGCAAATTTTGTTCATAGCC...TTTCTCTGAAGGGAAACAGAGGTGCAGTGGATCAGGGTGGGAGAAGAAGGAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS-3UTR CAA 90 bp | ACCACAGATTCCCCCTTCTCCATTATACAAAGTTCCTCCCTCACCTCCTTCTTCCTGATAAGGATTGCCTaGAGTTCTCCTAGAATTTCT | + |
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Preference number: 5 (lower is better) Translates to: TTDSPFSIIQSSSLTSFFLIRIA*SSPRIS Trigger: AGAAATTCTAGGAGAACTCAAGGCAATCCTTATCAG...GAAGAAGGAGGTGAGGGAGGAACTTTGTATAATGGAGAAGGGGGAATCTGTGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS CCA 90 bp | GTTCTTCAATGGTTATTTCATTGTATCCTTCCATGTCAAAGCACATaGGCATGGAATACACATTCTCCCACAGGAGAAGGTTTGACACTA | + |
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Preference number: 5 (lower is better) Translates to: VLQWLFHCILPCQST*AWNTHSPTGEGLTL Trigger: TAGTGTCAAACCTTCTCCTGTGGGAGAATGTGTATTCCATGCCCATGTGCTTTGACATGGAAGGATACAATGAAATAACCATTGAAGAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS TCA 90 bp | AACAAAATTTGCATCAAACTCCTCAGACATTTGTGTGGTGAGGTTTaGGATGTACTGAGCCATGAAAATAGCACTGTCAAAGAGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: NKICIKLLRHLCGEV*DVLSHENSTVKEFF Trigger: GAAGAACTCTTTGACAGTGCTATTTTCATGGCTCAGTACATCTCAAACCTCACCACACAAATGTCTGAGGAGTTTGATGCAAATTTTGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS CAA 72 bp | TGGGCATGGAATACACATTCTCCCACAGGAGAAGGTTaGACACTAGCAGCACCTGAAACATCCAGGAACATG | + |
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Preference number: 6 (lower is better) Translates to: WAWNTHSPTGEG*TLAAPETSRNM Trigger: CATGTTCCTGGATGTTTCAGGTGCTGCTAGTGTCAAACCTTCTCCTGTGGGAGAATGTGTATTCCATGCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS GCA 72 bp | AAAGTAGCGGGTATTGTCATCAGCAGACTTCACATCTaGCAGTCCCATCCAAGCAGCATAGACATTTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: KVAGIVISRLHI*QSHPSSIDIFF Trigger: GAAGAAAATGTCTATGCTGCTTGGATGGGACTGGCAGATGTGAAGTCTGCTGATGACAATACCCGCTACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS CAA 72 bp | GTTTCCTTCACTTCTATGACTTTCAACAGTATGGTCTaGCAGGCTCCTTCAAGAGTAGCCAATGCACGCACA | + |
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Preference number: 6 (lower is better) Translates to: VSFTSMTFNSMV*QAPSRVANART Trigger: TGTGCGTGCATTGGCTACTCTTGAAGGAGCCTGCAAGACCATACTGTTGAAAGTCATAGAAGTGAAGGAAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS CAA 90 bp | TCTTGGTTTGTTTCCTTCACTTCTATGACTTTCAACAGTATGGTCTaGCAGGCTCCTTCAAGAGTAGCCAATGCACGCACAAGTTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: SWFVSFTSMTFNSMV*QAPSRVANARTSCF Trigger: GAAACAACTTGTGCGTGCATTGGCTACTCTTGAAGGAGCCTGCAAGACCATACTGTTGAAAGTCATAGAAGTGAAGGAAACAAACCAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS TCA 72 bp | TGCATCAAACTCCTCAGACATTTGTGTGGTGAGGTTTaGGATGTACTGAGCCATGAAAATAGCACTGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: CIKLLRHLCGEV*DVLSHENSTVK Trigger: TTTGACAGTGCTATTTTCATGGCTCAGTACATCTCAAACCTCACCACACAAATGTCTGAGGAGTTTGATGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS TCA 72 bp | ATCACCATCTTCAGAAGGACATCTGATTGTGTCTGTTaGATTTGTTCAGTGCTTGCAGGAGTAGCAAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: ITIFRRTSDCVC*ICSVLAGVASE Trigger: TTCACTTGCTACTCCTGCAAGCACTGAACAAATTCAACAGACACAATCAGATGTCCTTCTGAAGATGGTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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| CDS GCA 72 bp | GTTCCTTGCTTTGTACCCAAGGCTATGAACAAAATTTaGATCAAACTCCTCAGACATTTGTGTGGTGAGGTT | + |
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Preference number: 6 (lower is better) Translates to: VPCFVPKAMNKI*IKLLRHLCGEV Trigger: AACCTCACCACACAAATGTCTGAGGAGTTTGATGCAAATTTTGTTCATAGCCTTGGGTACAAAGCAAGGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049463.4 |
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